genome.fa.s25.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  173  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50541093--50541135	10	4.0	10	82	11	50	83	2	6	6	0.88
50545504--50545558	20	2.7	20	74	2	56	38	7	0	54	1.28
50556379--50556483	23	4.6	23	77	11	83	54	2	8	34	1.46
50556351--50556483	45	2.9	46	76	9	112	54	4	8	33	1.51
50556450--50556506	24	2.5	22	80	11	60	59	7	3	29	1.40
50557307--50557367	19	3.2	19	83	0	86	14	27	4	52	1.62
50558186--50558223	15	2.5	15	86	0	58	36	42	0	21	1.53
50558709--50559150	41	10.8	41	74	8	328	36	22	20	20	1.95
50558715--50559098	82	4.7	82	87	3	495	36	22	20	20	1.95
50565834--50565884	6	8.5	6	80	8	50	76	0	1	21	0.88
50565834--50565884	18	2.9	18	80	11	61	76	0	1	21	0.88
50566510--50566545	17	2.1	17	100	0	72	5	27	22	44	1.75
50586434--50586479	19	2.5	19	76	16	51	65	6	2	26	1.28
50600974--50601010	18	2.0	19	89	5	58	21	10	13	54	1.69
50605912--50605949	3	12.7	3	100	0	76	0	34	0	65	0.93
50606984--50607029	21	2.2	21	84	7	58	65	2	0	32	1.05
50607704--50607759	28	1.9	29	85	7	78	55	7	0	37	1.27
50616827--50616893	21	3.2	21	66	8	55	16	17	16	49	1.80
50616827--50616977	42	3.6	42	81	3	144	17	21	16	45	1.86
50622046--50622112	25	2.7	25	80	0	80	31	19	28	20	1.97
50622046--50622128	25	3.3	25	81	0	76	30	18	28	22	1.97
50625983--50626054	27	2.7	27	82	0	99	23	33	33	9	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50626141--50626173	17	1.9	17	93	0	57	75	6	9	9	1.18
50626109--50626207	49	2.0	49	82	7	119	61	7	10	21	1.51
50626159--50626481	157	2.1	157	89	1	495	54	8	8	28	1.60
50626496--50627106	159	3.8	159	90	3	926	27	8	9	54	1.61
50653409--50653438	15	2.0	15	93	0	51	56	0	6	36	1.26
50655862--50655904	3	14.3	3	100	0	86	32	0	0	67	0.91
50676114--50676152	20	2.0	19	90	5	60	0	25	0	74	0.82
50678703--50678815	41	2.8	41	93	2	183	23	29	18	29	1.98
50679309--50679352	5	8.6	5	80	14	54	40	0	0	59	0.98
50679314--50679343	8	3.8	8	90	0	51	40	0	0	60	0.97
50679308--50679352	16	2.9	16	90	3	74	40	0	0	60	0.97
50680449--50680582	22	5.6	25	79	10	97	17	23	20	39	1.92
50680496--50680576	22	3.6	22	86	3	99	13	24	20	40	1.89
50694640--50694681	17	2.4	18	84	11	52	47	14	0	38	1.44
50696082--50696183	43	2.4	42	81	6	123	26	27	11	34	1.91
50697888--50698002	19	5.7	21	81	11	89	40	17	5	36	1.72
50697924--50698015	19	4.8	19	91	0	157	38	17	8	35	1.81
50697917--50698015	38	2.7	38	95	3	175	37	18	8	36	1.80
50698676--50699520	88	9.6	89	78	3	714	24	24	23	27	2.00
50698668--50699520	176	4.8	176	88	1	1122	24	24	23	27	2.00
50698676--50699520	264	3.2	263	79	3	928	24	24	23	27	2.00
50701688--50701748	26	2.3	26	83	5	70	57	4	14	22	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50705417--50705647	102	2.3	102	93	0	390	29	28	20	21	1.98
50712881--50713133	33	7.5	33	69	25	172	30	28	20	19	1.97
50712830--50713165	102	3.3	102	94	0	573	28	28	21	21	1.98
50713494--50713558	30	2.2	30	85	0	85	32	26	6	35	1.81
50715804--50715835	12	2.7	12	95	0	55	78	0	3	18	0.89
50715919--50716144	43	5.3	42	77	8	208	28	27	15	27	1.96
50715963--50716144	86	2.1	85	84	1	229	30	27	14	27	1.95
50721686--50721727	16	2.5	17	92	7	68	45	0	0	54	0.99
50721838--50721947	28	4.0	27	74	9	78	35	41	0	21	1.60
50721838--50721881	14	3.1	14	78	12	54	31	47	0	20	1.50
50721879--50721988	7	15.9	7	70	9	55	41	34	1	21	1.64
50721879--50722048	14	12.1	14	69	7	103	44	32	1	22	1.61
50721908--50721988	21	3.9	21	80	0	90	43	34	2	19	1.65
50721937--50722031	43	2.2	42	81	7	111	44	33	1	21	1.59
50724193--50724296	54	1.9	55	90	2	165	34	22	10	32	1.88
50727162--50727211	7	7.0	7	84	4	64	18	0	36	46	1.49
50727161--50727211	22	2.4	22	93	3	86	17	0	35	47	1.48
50727169--50727200	15	2.1	15	94	0	55	15	0	31	53	1.43
50729495--50729614	39	3.1	39	91	0	195	30	30	20	18	1.96
50731055--50731140	44	2.0	44	93	4	147	39	5	18	36	1.75
50732297--50732335	20	2.0	20	85	10	53	46	12	2	38	1.56
50732440--50732495	27	2.1	27	96	0	103	26	8	14	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50732959--50733161	41	5.0	41	92	0	334	19	23	29	28	1.98
50733525--50733561	14	2.6	14	91	0	65	24	0	29	45	1.53
50733610--50733642	14	2.3	15	89	5	50	30	3	30	36	1.73
50733860--50733911	7	7.4	7	84	0	59	23	0	44	32	1.54
50733860--50733919	14	4.3	14	79	8	59	25	0	41	33	1.55
50733860--50733919	21	2.9	21	76	0	66	25	0	41	33	1.55
50738373--50738463	43	2.1	43	87	2	130	35	10	9	43	1.73
50738737--50738963	43	5.3	43	81	5	248	22	16	30	30	1.95
50738732--50738963	85	2.7	85	84	4	263	22	15	30	31	1.95
50739055--50739100	22	2.1	21	88	4	65	43	26	17	13	1.85
50739753--50739791	19	2.1	19	85	9	53	28	5	10	56	1.54
50740621--50740658	20	1.9	20	89	10	60	26	0	13	60	1.33
50741294--50741491	102	1.9	103	86	2	281	45	9	12	31	1.74
50744046--50744109	29	2.2	29	83	5	76	31	6	12	50	1.65
50744120--50744159	21	1.9	21	100	0	80	47	5	15	32	1.66
50744389--50744425	19	2.0	19	89	5	58	32	0	10	56	1.34
50744394--50744432	18	2.0	20	85	9	55	38	0	10	51	1.36
50748518--50748863	27	12.9	27	81	4	335	42	16	13	27	1.85
50748533--50748863	54	6.1	54	82	5	384	43	16	12	27	1.84
50748517--50748850	81	4.1	80	84	2	418	42	17	12	27	1.86
50749005--50749101	26	3.7	26	81	2	79	19	23	21	35	1.96
50749030--50749132	26	4.0	26	82	2	118	20	23	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50749030--50749136	52	2.1	52	85	3	144	21	22	22	33	1.97
50753318--50753363	21	2.1	22	88	4	67	21	6	2	69	1.22
50756284--50756322	19	2.0	20	90	5	62	48	2	7	41	1.45
50757322--50757456	40	3.4	38	75	9	121	26	17	23	32	1.96
50757832--50757868	9	4.1	9	92	0	65	45	13	10	29	1.77
50757904--50757946	21	2.0	21	82	8	52	23	34	0	41	1.55
50760216--50760269	28	2.0	27	89	10	85	38	11	3	46	1.57
50762217--50762244	3	9.3	3	100	0	56	32	0	0	67	0.91
50767067--50767096	15	2.0	15	93	0	51	3	26	0	70	1.03
50778022--50778357	126	2.7	125	87	2	478	30	15	22	31	1.95
50781385--50781602	116	1.9	116	91	1	357	43	10	9	37	1.70
50781599--50781654	29	1.9	29	92	0	94	25	1	26	46	1.63
50781688--50781949	45	5.6	45	82	13	332	26	0	25	46	1.58
50781684--50782243	95	5.8	96	86	8	673	25	1	26	46	1.60
50781895--50782056	57	3.0	57	84	11	239	22	1	31	45	1.60
50781952--50782247	45	6.3	45	84	8	378	24	1	27	46	1.61
50781797--50782243	152	3.0	151	89	5	673	25	1	27	46	1.60
50781608--50782247	23	26.7	23	65	21	216	25	1	26	46	1.60
50782761--50782795	18	1.9	18	94	0	61	37	5	28	28	1.80
50783448--50783479	7	4.6	7	100	0	64	59	12	0	28	1.34
50784637--50784724	40	2.2	40	95	0	158	44	0	22	32	1.53
50784699--50784746	22	2.2	22	100	0	96	39	0	31	29	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50785146--50785563	9	44.4	9	65	18	74	35	2	3	58	1.28
50785217--50785282	30	2.2	30	78	5	71	31	1	1	65	1.11
50785610--50785642	18	1.9	17	88	11	50	75	6	3	15	1.11
50790084--50790113	15	2.0	15	100	0	60	46	6	33	13	1.69
50790944--50790987	22	2.0	22	82	8	54	59	2	0	38	1.10
50792355--50792393	7	5.6	7	100	0	78	41	0	0	58	0.98
50793777--50793817	3	13.7	3	100	0	82	68	0	0	31	0.90
50795905--50796041	43	3.2	43	82	5	143	34	20	18	27	1.96
50796683--50796727	9	5.1	9	82	15	58	44	0	2	53	1.13
50797072--50797103	17	2.0	17	88	11	50	62	15	21	0	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196