genome.fa.s25.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  184  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54009917--54010191	96	2.8	95	86	6	302	32	1	14	52	1.51
54010338--54010411	38	1.9	38	94	0	130	54	5	2	37	1.38
54010523--54010564	16	2.7	16	81	3	50	38	2	4	54	1.34
54012185--54012237	6	8.8	6	93	0	88	32	32	35	0	1.58
54015440--54015783	19	18.5	19	65	23	128	54	12	0	31	1.43
54015446--54015781	22	14.9	22	67	19	160	55	12	0	31	1.42
54015434--54015647	49	4.3	49	85	5	304	54	13	0	31	1.45
54015434--54015647	98	2.1	101	92	2	362	54	13	0	31	1.45
54015596--54015781	41	4.5	41	73	17	170	55	12	0	32	1.37
54015443--54015656	71	2.9	72	75	13	209	54	13	0	31	1.45
54015601--54015782	83	2.2	84	77	13	198	55	12	0	32	1.37
54020600--54020728	41	3.1	41	88	1	195	30	18	25	25	1.98
54033774--54033809	18	2.0	18	100	0	72	55	11	5	27	1.57
54045896--54045929	14	2.4	14	86	13	52	50	2	0	47	1.16
54046760--54046850	44	2.0	47	81	14	111	39	20	24	15	1.91
54046761--54046862	22	4.3	24	78	13	90	39	20	24	15	1.92
54047818--54047886	5	13.8	5	100	0	138	59	0	0	40	0.97
54049617--54049872	142	1.8	142	85	0	368	33	20	14	31	1.93
54053640--54053680	19	2.2	18	86	4	55	78	2	2	17	0.98
54053641--54053680	18	2.2	19	86	8	57	77	2	2	17	0.99
54053868--54053912	23	2.0	23	86	8	65	42	0	2	55	1.12
54054087--54054137	8	6.9	8	74	17	56	33	1	0	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54054092--54054142	14	3.6	14	79	12	52	35	1	0	62	1.06
54054094--54054142	21	2.3	22	75	10	57	34	2	0	63	1.06
54058198--54058232	6	5.7	6	89	3	52	62	0	2	34	1.10
54066593--54066660	19	3.8	17	76	18	59	23	0	2	73	0.97
54066592--54066646	27	2.1	26	86	3	74	21	0	3	74	0.97
54066598--54066678	18	4.2	19	73	17	60	23	1	4	70	1.14
54068299--54068372	26	2.8	26	83	2	94	64	2	0	32	1.07
54071199--54071245	24	2.0	24	95	0	85	21	12	25	40	1.89
54074452--54074495	19	2.3	19	88	4	61	61	0	0	38	0.96
54082185--54082245	20	3.1	19	71	15	52	67	4	3	24	1.26
54082329--54082401	31	2.4	31	83	0	92	39	10	8	41	1.70
54082483--54082517	18	1.9	18	88	0	52	45	11	5	37	1.64
54088897--54088924	14	2.0	14	100	0	56	7	42	7	42	1.59
54089604--54089635	17	1.9	16	93	6	55	15	9	0	75	1.05
54092367--54092400	16	2.1	16	94	0	59	32	0	0	67	0.91
54092386--54092557	26	7.0	25	66	23	82	42	1	2	53	1.23
54092404--54092584	56	3.0	60	70	21	151	43	1	3	51	1.28
54092484--54092618	18	8.0	17	70	19	95	40	0	1	57	1.13
54092365--54092584	120	1.8	118	96	1	404	42	1	2	53	1.23
54092512--54092567	15	4.0	15	73	17	57	44	0	0	55	0.99
54092365--54092603	41	5.9	40	67	23	119	41	1	2	54	1.22
54092775--54092872	45	2.2	45	85	5	128	32	29	5	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54095821--54096354	230	2.3	223	85	8	664	38	14	17	29	1.89
54095845--54096350	112	4.4	114	85	7	645	36	15	17	29	1.91
54096537--54097048	109	4.6	110	82	10	591	27	16	14	41	1.88
54096601--54097028	217	2.0	213	85	5	576	27	17	14	40	1.88
54099997--54100153	77	2.0	77	80	10	176	18	18	15	47	1.82
54109737--54109765	14	2.1	14	93	6	51	48	0	6	44	1.29
54112320--54112394	31	2.5	30	84	2	96	49	13	16	21	1.79
54123164--54123188	12	2.1	12	100	0	50	16	40	8	36	1.77
54129337--54129361	6	4.2	6	100	0	50	32	0	0	68	0.90
54139694--54139772	30	2.7	30	88	5	117	29	5	16	49	1.67
54140031--54140103	30	2.4	30	84	8	87	67	1	5	26	1.21
54140050--54140110	20	3.1	19	73	17	52	65	1	3	29	1.18
54140494--54140533	20	2.0	20	100	0	80	55	0	5	40	1.22
54144092--54144143	24	2.2	24	82	0	59	48	7	5	38	1.56
54145293--54145351	29	2.2	26	81	9	64	28	15	11	44	1.82
54162903--54162942	14	2.9	14	88	0	62	32	5	17	45	1.70
54162926--54162965	20	2.0	20	90	0	62	27	10	12	50	1.72
54162911--54162977	34	1.9	35	93	3	118	31	7	13	47	1.70
54162905--54162981	14	5.0	15	72	20	61	32	7	15	44	1.75
54165780--54165830	18	2.8	18	75	0	66	39	3	43	13	1.63
54182303--54182399	31	3.2	30	80	11	99	23	15	13	47	1.81
54204302--54204423	33	3.8	33	76	13	121	25	15	10	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54204361--54204436	33	2.4	32	86	4	91	27	18	9	44	1.80
54204872--54205019	59	2.5	57	83	8	174	49	12	14	22	1.78
54205501--54205530	15	2.0	15	93	0	51	23	0	3	73	0.98
54205924--54205960	19	1.9	19	88	0	56	48	0	0	51	1.00
54211342--54211408	30	2.3	29	84	10	91	28	2	7	61	1.38
54212711--54212746	16	2.2	17	90	5	56	25	0	2	72	0.98
54212721--54212762	19	2.2	19	83	8	50	30	0	2	66	1.04
54214419--54214482	25	2.6	25	82	7	78	43	9	0	46	1.35
54214556--54214614	30	2.0	30	82	0	73	40	3	3	52	1.35
54214635--54214682	17	2.9	17	85	11	57	39	8	2	50	1.44
54226375--54226949	45	12.9	45	76	6	456	32	18	22	26	1.97
54226375--54226773	90	4.4	89	85	3	507	33	17	23	25	1.96
54228656--54228691	17	2.1	17	90	10	56	36	8	0	55	1.30
54229995--54230087	39	2.3	40	83	5	125	39	4	5	50	1.45
54231348--54231408	9	6.9	9	81	1	52	67	0	3	29	1.07
54231440--54231479	20	2.0	20	85	4	55	62	2	5	30	1.29
54231797--54231845	8	5.7	9	75	15	50	34	0	2	63	1.06
54236835--54236928	48	2.0	48	85	8	129	21	12	25	40	1.89
54241577--54241669	18	5.2	18	85	0	132	29	23	15	32	1.95
54252487--54252513	6	4.5	6	100	0	54	0	0	14	85	0.61
54266358--54266433	32	2.4	32	79	16	95	34	7	5	52	1.53
54267478--54267518	18	2.3	18	87	8	57	39	0	46	14	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54267490--54267518	6	4.8	6	100	0	58	34	0	48	17	1.47
54272364--54272405	18	2.3	18	84	8	59	40	2	0	57	1.12
54275816--54275845	14	2.1	14	93	0	51	33	10	0	56	1.32
54280660--54280736	38	2.0	38	87	7	111	37	9	1	51	1.42
54293871--54294026	46	3.5	46	94	2	264	28	23	14	33	1.94
54310661--54310705	22	2.0	22	100	0	90	26	17	4	51	1.65
54313047--54313172	67	1.9	66	90	1	198	26	33	19	20	1.96
54313294--54313440	57	2.5	59	83	8	183	23	26	21	29	1.99
54314509--54314551	18	2.5	17	81	11	52	53	2	0	44	1.13
54317400--54317724	46	7.0	46	92	2	501	29	21	8	40	1.83
54317805--54317868	31	2.1	31	96	0	119	34	12	7	45	1.71
54321387--54322310	363	2.6	359	94	2	1594	24	19	17	37	1.94
54322285--54322340	3	18.7	3	100	0	112	32	0	0	67	0.91
54322857--54323033	85	2.1	85	98	0	345	37	8	27	26	1.85
54324346--54324387	18	2.3	18	100	0	84	38	0	23	38	1.55
54324302--54324430	67	2.0	65	95	3	231	34	6	26	32	1.81
54324364--54324865	47	10.6	47	92	3	731	33	8	29	28	1.87
54324364--54324865	96	5.3	94	90	3	731	33	8	29	28	1.87
54324364--54324865	143	3.5	141	89	4	731	33	8	29	28	1.87
54324716--54324837	22	5.3	22	62	21	61	33	11	29	25	1.91
54327294--54327368	38	2.0	38	86	5	107	30	18	26	24	1.98
54327421--54327742	40	8.1	40	92	0	502	24	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54327421--54327742	119	2.7	120	92	0	520	24	21	27	25	1.99
54327421--54327742	159	2.0	160	90	0	502	24	21	27	25	1.99
54328729--54328755	13	2.1	13	100	0	54	14	29	33	22	1.94
54329011--54329190	86	2.1	85	96	1	333	37	8	27	26	1.85
54330457--54331006	47	11.6	47	93	3	836	33	8	29	28	1.87
54330457--54331006	96	5.8	94	92	3	836	33	8	29	28	1.87
54330457--54331006	143	3.9	141	91	3	836	33	8	29	28	1.87
54330857--54330978	22	5.3	22	62	21	61	33	11	29	25	1.91
54332925--54334007	344	3.1	344	91	5	1745	25	17	18	38	1.93
54333612--54333646	3	11.7	3	100	0	70	31	0	0	68	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196