genome.fa.s25.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  105  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31652830--31653094	44	6.1	45	71	12	133	27	20	23	27	1.99
31652822--31653076	85	2.9	87	70	11	227	27	20	25	27	1.99
31653011--31653109	44	2.2	44	80	7	103	27	21	27	24	1.99
31652822--31653152	173	1.9	173	81	6	402	28	21	23	26	1.99
31662498--31663194	230	3.0	235	83	7	821	37	10	7	45	1.66
31667401--31667579	50	3.7	50	88	3	251	18	33	20	27	1.96
31667600--31667694	44	2.2	44	96	0	172	24	22	12	41	1.88
31669275--31669328	18	2.9	17	76	15	54	46	1	3	48	1.30
31669234--31669699	226	2.1	227	86	3	652	38	9	6	45	1.62
31669840--31669894	2	30.5	2	73	26	52	43	0	1	54	1.10
31669840--31669894	9	6.1	10	75	25	52	43	0	1	54	1.10
31669839--31669895	5	11.4	5	78	17	57	42	0	1	56	1.10
31669818--31669901	26	3.7	23	73	20	77	39	0	3	57	1.16
31672129--31672185	21	2.7	22	76	7	66	40	17	24	17	1.91
31672129--31672232	42	2.5	41	81	4	127	41	17	22	19	1.90
31673168--31673204	16	2.3	16	95	0	65	40	5	2	51	1.39
31680141--31680182	21	2.0	21	95	0	75	42	21	9	26	1.83
31682234--31682298	31	2.1	31	91	0	103	40	15	13	30	1.86
31683587--31683615	14	2.0	15	93	6	51	0	13	6	79	0.93
31687762--31687865	45	2.3	45	88	3	156	27	39	9	23	1.86
31696192--31696253	24	2.6	23	80	7	79	24	8	20	46	1.77
31696322--31696381	27	2.2	27	91	5	95	18	23	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31696330--31696387	27	2.1	27	84	6	73	18	25	18	36	1.95
31696369--31696434	26	2.5	26	85	0	78	19	18	25	36	1.94
31696428--31696627	32	6.3	32	84	2	242	24	19	17	39	1.92
31696619--31696692	22	3.3	21	77	5	67	16	21	20	41	1.90
31703145--31703197	26	2.0	26	85	7	72	18	18	32	30	1.96
31703174--31703321	43	3.5	43	77	12	130	23	15	24	36	1.94
31705359--31705465	37	2.9	37	89	10	166	63	0	2	33	1.09
31706562--31706639	14	5.1	14	68	24	50	33	7	14	44	1.73
31706585--31706624	20	2.0	20	90	0	62	27	10	12	50	1.72
31706570--31706636	34	1.9	35	93	3	118	31	7	13	47	1.70
31707901--31707927	13	2.1	13	100	0	54	55	14	7	22	1.64
31708963--31708988	12	2.2	12	100	0	52	53	7	38	0	1.30
31708968--31709007	19	2.1	19	95	0	71	47	7	45	0	1.31
31710249--31710339	40	2.3	40	82	0	101	54	5	4	35	1.43
31710263--31710341	40	2.0	40	87	0	113	54	5	3	36	1.41
31715655--31715699	23	2.0	22	84	16	58	35	0	17	46	1.49
31716133--31716173	21	2.0	21	85	9	57	43	0	24	31	1.54
31718371--31718407	20	1.9	19	89	10	58	43	5	0	51	1.24
31719279--31719319	15	2.6	17	77	14	52	41	7	0	51	1.30
31719785--31719830	24	2.0	24	82	4	58	15	6	17	60	1.55
31722817--31722913	25	3.9	25	77	0	95	30	19	26	22	1.98
31724330--31724388	30	2.0	30	96	0	109	27	8	15	49	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31732842--31733234	195	2.0	195	97	0	750	33	22	13	29	1.93
31743830--31744029	68	3.2	60	76	14	172	50	5	3	40	1.43
31744295--31744336	19	2.2	19	86	0	57	9	21	23	45	1.81
31758849--31758898	21	2.3	21	79	3	55	20	18	16	46	1.85
31766276--31766432	81	1.9	81	100	0	314	26	23	21	29	1.99
31773209--31773261	21	2.4	22	84	9	81	62	0	1	35	1.06
31773216--31773310	22	4.5	22	75	17	78	58	0	3	37	1.14
31773222--31773339	32	3.9	31	82	9	111	61	0	2	35	1.09
31773219--31773339	61	2.0	60	83	4	154	60	0	2	37	1.10
31773303--31773348	17	2.7	17	86	0	65	58	0	0	41	0.98
31777132--31777287	42	3.7	42	77	16	169	30	26	18	24	1.98
31784456--31784611	42	3.7	42	77	16	169	30	26	18	24	1.98
31786061--31786201	24	5.8	24	67	19	85	36	21	23	18	1.95
31786052--31786188	49	2.8	47	76	15	127	35	21	24	18	1.96
31788724--31788775	27	1.9	27	96	0	95	73	3	3	19	1.15
31789308--31789353	20	2.3	20	84	0	56	15	10	6	67	1.40
31790102--31790195	48	2.0	48	85	8	129	40	26	12	20	1.88
31792614--31792707	48	2.0	48	87	8	138	40	27	12	19	1.88
31795128--31795221	48	2.0	48	87	8	138	40	27	12	19	1.88
31797640--31797733	48	2.0	48	85	8	129	40	26	12	20	1.88
31798694--31798747	21	2.5	20	82	11	63	31	1	18	48	1.59
31798745--31798783	20	2.0	19	85	14	53	23	0	10	66	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31798803--31798845	21	2.0	21	100	0	86	13	0	27	58	1.37
31804382--31804744	180	2.0	180	90	1	566	25	29	20	23	1.99
31805216--31805414	43	4.6	42	83	3	166	33	24	17	24	1.96
31805342--31805445	43	2.4	43	85	0	136	38	26	12	22	1.90
31811805--31811985	41	4.4	41	85	2	240	17	20	30	31	1.95
31812331--31812367	14	2.6	14	95	0	65	21	0	29	48	1.50
31814751--31814796	21	2.2	21	100	0	92	17	8	23	50	1.74
31816646--31816785	43	3.3	43	86	2	183	27	17	28	26	1.97
31817362--31817431	14	4.9	14	77	18	56	41	40	0	18	1.51
31817363--31817460	42	2.3	43	78	8	110	40	39	0	19	1.52
31817412--31817460	14	3.4	14	88	5	71	42	34	0	22	1.54
31817807--31818245	41	10.8	41	81	1	425	31	27	17	23	1.97
31821371--31821929	115	4.9	113	78	7	511	31	18	23	26	1.97
31821388--31821929	229	2.4	229	80	4	581	32	18	22	26	1.97
31823795--31824130	43	7.8	43	86	2	415	22	30	18	27	1.98
31824324--31824380	19	3.0	19	92	0	96	61	0	8	29	1.26
31824483--31824531	21	2.3	21	82	0	62	2	40	18	38	1.62
31824970--31825002	13	2.4	14	90	5	50	69	12	0	18	1.18
31830085--31830428	9	39.8	9	71	15	244	31	2	19	46	1.63
31830112--31830336	59	3.8	58	82	9	240	32	2	19	45	1.63
31830252--31830290	19	2.1	19	85	9	53	30	0	17	51	1.46
31830269--31830379	43	2.6	41	84	8	150	31	0	19	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31830136--31830379	52	4.7	52	74	12	162	31	2	19	46	1.62
31830085--31830581	34	14.5	34	68	20	197	34	2	18	45	1.62
31830074--31830395	25	12.3	25	72	15	158	31	2	19	46	1.62
31830541--31830581	13	2.8	15	85	14	59	34	0	19	46	1.50
31830555--31830695	9	16.2	9	69	17	50	34	1	17	46	1.56
31830657--31830788	12	11.6	11	71	18	74	37	0	13	48	1.48
31830647--31830753	33	3.2	33	81	7	110	37	0	14	47	1.45
31830660--31830786	45	3.0	44	70	23	137	36	0	13	49	1.48
31830631--31830788	12	13.8	12	68	21	65	37	0	14	47	1.49
31830631--31830790	23	7.1	22	66	18	71	36	0	15	47	1.50
31830850--31830911	19	3.2	19	82	11	63	54	3	1	40	1.26
31830861--31830913	21	2.5	22	84	9	74	56	1	1	39	1.21
31833220--31833271	27	1.9	27	84	0	68	48	9	0	42	1.36
31833339--31833367	10	2.9	10	100	0	58	41	17	0	41	1.49
31836061--31836323	41	6.4	41	77	4	271	36	22	25	16	1.94
31836083--31836322	82	2.9	82	91	0	381	35	22	25	16	1.95
31836380--31836495	40	2.9	38	77	6	115	17	25	23	34	1.96
31839478--31840248	9	87.7	9	76	11	678	47	16	2	33	1.59
31840124--31840248	50	2.5	52	90	5	195	42	20	3	34	1.68
31845695--31845745	21	2.4	21	83	0	57	33	19	43	3	1.70
31846123--31846235	43	2.6	43	75	6	111	30	16	22	30	1.96
31846230--31846337	42	2.6	42	79	5	121	35	19	18	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31848987--31849065	26	3.0	26	73	10	79	49	2	2	45	1.29
31851274--31851315	17	2.4	18	80	15	52	64	0	9	26	1.24
31851286--31851320	17	2.0	18	94	5	63	57	0	11	31	1.34
31851291--31851329	17	2.2	17	90	4	60	61	0	12	25	1.31
31852790--31852820	16	2.0	15	93	6	53	87	0	12	0	0.55
31853285--31853359	30	2.4	30	80	8	89	64	0	5	30	1.16
31853368--31853411	9	4.9	9	83	10	54	68	2	0	29	1.02
31853594--31853666	10	7.6	10	71	9	53	32	5	2	58	1.35
31853610--31853662	19	2.7	19	88	2	61	30	7	1	60	1.35
31853629--31853662	9	3.7	9	84	7	50	29	2	2	64	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196