genome.fa.s25.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  106  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31860157--31860202	3	15.3	3	100	0	92	67	0	0	32	0.91
31867775--31867812	17	2.3	16	83	16	51	73	0	0	26	0.83
31869735--31869775	18	2.2	19	91	4	66	58	0	0	41	0.98
31869743--31869775	5	7.0	5	86	13	52	60	0	0	39	0.97
31869743--31869775	9	3.5	10	88	12	52	60	0	0	39	0.97
31870112--31870137	2	13.0	2	100	0	52	50	0	0	50	1.00
31870408--31870440	15	2.1	16	88	11	50	60	0	6	33	1.21
31870695--31870762	24	2.9	24	72	16	61	52	1	0	45	1.09
31871749--31871901	75	2.1	75	88	1	227	25	5	13	54	1.61
31882644--31882893	24	10.7	24	72	14	182	41	17	13	27	1.87
31882627--31882866	46	5.2	46	83	5	295	41	17	13	27	1.87
31882627--31882865	92	2.6	92	88	5	338	41	17	13	28	1.87
31882638--31882887	70	3.6	69	73	15	217	42	17	13	27	1.86
31883585--31883720	41	3.3	40	86	5	184	33	26	16	24	1.96
31883584--31883741	40	3.9	40	84	4	185	32	25	15	25	1.95
31890076--31890356	46	6.1	46	87	2	402	41	17	14	26	1.88
31891070--31891190	41	3.0	41	81	6	147	33	28	14	23	1.94
31891073--31891208	40	3.4	42	79	7	138	33	27	14	25	1.95
31896381--31896465	44	1.9	45	90	4	138	43	2	3	50	1.32
31896382--31896464	23	3.7	23	68	14	64	43	2	3	50	1.32
31898816--31898856	21	1.9	22	85	5	57	48	0	2	48	1.14
31902316--31902540	40	5.7	40	90	5	314	26	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31941268--31941488	39	5.6	39	88	4	259	25	20	27	26	1.99
31941229--31941488	40	6.6	40	85	5	289	25	20	27	26	1.99
31941229--31941488	79	3.3	78	84	2	306	25	20	27	26	1.99
31943020--31943059	21	2.0	20	86	13	57	20	20	2	57	1.52
31961049--31961111	32	2.0	32	100	0	126	33	19	9	38	1.84
31964151--31964198	25	1.9	25	87	8	71	52	2	25	20	1.58
31970181--31970240	27	2.2	27	93	0	102	36	20	15	28	1.92
31970296--31970367	27	2.7	27	77	12	67	23	29	13	33	1.93
31981282--31981314	13	2.5	13	100	0	66	18	15	9	57	1.63
31981340--31981376	9	4.1	9	85	0	56	48	13	8	29	1.71
31986529--31986593	29	2.2	30	81	13	82	32	1	1	64	1.12
31986690--31986753	29	2.2	30	82	2	76	70	1	6	21	1.18
31987270--31987307	19	2.0	20	89	5	60	52	2	0	44	1.14
31987251--31987323	28	2.6	28	82	6	85	58	2	0	38	1.12
31987519--31987586	25	2.7	25	80	13	77	30	1	2	64	1.17
31987554--31987597	18	2.5	17	78	7	52	22	2	2	72	1.07
31988141--31988171	15	2.0	16	93	6	55	70	0	0	29	0.87
31989588--31989652	30	2.2	30	91	0	112	27	29	3	40	1.71
31992560--31992612	12	4.2	12	77	13	52	45	3	7	43	1.50
31993278--31993386	41	2.6	41	91	1	164	23	22	28	25	1.99
32000182--32000234	12	4.2	12	77	13	52	45	3	7	43	1.50
32000900--32001033	41	3.3	41	90	0	205	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32001895--32001929	18	1.9	18	94	0	61	25	28	5	40	1.78
32001894--32001936	18	2.4	18	84	0	59	25	27	4	41	1.75
32002335--32002391	25	2.3	23	81	18	71	42	0	5	52	1.24
32005304--32006446	125	9.1	126	86	3	1531	28	16	17	37	1.92
32006504--32006615	34	3.4	33	81	6	136	43	13	0	42	1.43
32007786--32007937	52	2.9	52	79	3	162	31	11	26	30	1.92
32008210--32008313	29	3.7	29	80	2	122	29	19	20	30	1.97
32013950--32013989	20	2.0	20	85	0	53	15	25	17	42	1.88
32015896--32015931	18	2.0	18	94	0	63	41	16	8	33	1.78
32016543--32016571	14	2.1	14	100	0	58	20	6	0	72	1.07
32018052--32018078	14	1.9	14	100	0	54	44	11	7	37	1.68
32048440--32048481	11	3.8	11	87	0	57	26	40	2	30	1.69
32059987--32060072	43	2.0	43	100	0	172	23	16	23	37	1.94
32073116--32073193	29	2.7	28	82	11	95	24	15	30	29	1.95
32073147--32073472	173	1.9	174	92	0	546	30	14	23	31	1.95
32078308--32078494	50	3.8	50	82	3	218	29	21	25	22	1.99
32084042--32084164	28	4.4	28	90	2	176	33	28	12	26	1.92
32092228--32092378	28	5.4	28	92	1	223	33	28	11	25	1.92
32096659--32096827	56	3.3	49	80	7	142	28	21	26	23	1.99
32115444--32115751	45	6.8	45	75	9	261	39	14	19	26	1.90
32115460--32115709	135	1.9	135	79	6	292	39	13	20	26	1.89
32118011--32118051	20	2.0	20	100	0	82	36	24	9	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32130017--32130050	2	17.0	2	87	0	50	47	2	2	47	1.32
32130525--32130677	28	5.5	28	96	0	263	26	12	28	33	1.92
32130500--32130677	56	3.2	56	91	1	268	25	12	28	33	1.92
32146469--32146503	13	2.7	13	100	0	70	0	31	14	54	1.40
32156062--32156139	38	2.1	38	92	0	129	37	26	6	29	1.81
32157586--32157813	69	3.3	69	90	4	345	26	7	22	43	1.80
32157626--32157843	69	3.2	66	77	14	221	27	8	23	39	1.84
32158139--32158165	5	5.4	5	100	0	54	40	18	18	22	1.91
32160994--32161193	51	3.9	51	77	3	206	25	16	27	31	1.96
32161002--32161186	101	1.8	102	88	3	284	24	16	27	32	1.96
32161190--32161282	45	2.1	45	89	0	141	27	19	20	32	1.97
32162476--32162559	42	2.0	42	100	0	168	38	7	23	30	1.82
32164500--32164572	25	2.9	25	78	8	85	20	30	16	32	1.95
32164610--32164676	25	2.7	25	79	4	73	28	26	13	31	1.94
32166623--32166652	11	2.7	11	89	0	51	86	0	13	0	0.57
32167689--32167746	23	2.6	23	83	8	66	48	6	0	44	1.29
32169109--32169140	16	2.0	16	100	0	64	68	6	6	18	1.32
32175922--32176077	76	2.1	76	100	0	312	39	16	11	32	1.85
32176487--32176562	39	1.9	39	97	0	143	17	9	13	60	1.58
32180497--32180681	79	2.3	81	83	7	227	24	22	27	24	2.00
32180498--32180681	40	4.6	40	82	9	207	25	22	27	24	2.00
32180550--32180714	79	2.1	79	83	6	201	26	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32188440--32188624	79	2.3	81	83	7	227	24	22	27	24	2.00
32188441--32188624	40	4.6	40	82	9	207	25	22	27	24	2.00
32188493--32188657	79	2.1	79	83	6	201	26	21	27	24	1.99
32194099--32194134	16	2.2	16	100	0	72	36	16	5	41	1.72
32198364--32198547	85	2.2	85	80	6	198	44	10	13	32	1.77
32198495--32198612	50	2.3	50	85	1	164	49	11	15	24	1.77
32198545--32199537	84	12.0	84	78	9	859	45	10	11	32	1.74
32198430--32198694	135	2.0	135	86	5	376	47	11	11	29	1.74
32198545--32199537	251	4.0	249	78	11	857	45	10	11	32	1.74
32199085--32199382	87	3.4	86	72	14	254	41	12	11	34	1.79
32198584--32199392	167	4.8	172	79	8	439	45	11	10	33	1.74
32202065--32202118	24	2.4	22	75	21	58	42	3	0	53	1.18
32203321--32203360	17	2.4	17	82	0	53	65	2	0	32	1.06
32209191--32209255	30	2.2	30	88	0	103	18	32	29	20	1.96
32210880--32210904	7	3.6	7	100	0	50	44	12	28	16	1.83
32216505--32216566	26	2.4	26	88	0	88	35	12	11	40	1.80
32223427--32223581	40	3.9	40	89	3	231	42	25	16	15	1.87
32223411--32223591	80	2.3	80	83	2	249	43	26	16	13	1.85
32224491--32224574	42	2.0	42	97	0	159	36	11	8	42	1.72
32224553--32224605	21	2.7	19	77	11	54	26	9	0	64	1.24
32231818--32231860	21	2.0	21	90	0	68	53	6	0	39	1.28
32234787--32234991	43	4.8	43	89	4	301	26	32	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32235261--32235351	43	2.1	43	89	2	139	43	9	9	36	1.71
32247030--32247069	14	2.9	14	92	3	64	27	25	15	32	1.95
32248757--32248981	50	4.4	49	76	8	132	24	24	21	28	1.99
32248789--32248981	50	3.7	51	78	8	185	24	26	22	26	2.00
32252551--32252575	12	2.1	12	100	0	50	60	0	8	32	1.26
32253175--32253236	7	8.9	7	100	0	124	43	0	0	56	0.99
32254455--32254528	29	2.5	31	86	8	100	22	13	16	47	1.81
32254480--32254553	29	2.5	29	82	4	85	25	14	13	45	1.82
32265158--32265250	46	2.0	46	97	2	179	26	16	25	31	1.96
32265972--32266042	21	3.5	20	72	14	65	57	2	4	35	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196