genome.fa.s25.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  174  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50798095--50798267	45	4.2	39	78	14	143	19	20	21	38	1.94
50798122--50798267	45	3.2	45	90	0	220	18	19	21	39	1.92
50799562--50799593	10	3.2	10	95	0	55	59	3	9	28	1.44
50800966--50801026	30	2.0	30	90	0	95	36	18	3	42	1.66
50800969--50801034	30	2.2	30	86	0	87	40	18	1	39	1.60
50801511--50801578	19	3.7	18	77	12	68	73	0	26	0	0.83
50801756--50801799	23	1.9	23	86	9	63	79	2	18	0	0.83
50802123--50802198	20	4.0	18	77	16	73	32	17	10	39	1.83
50802123--50802194	18	3.9	17	79	16	72	33	16	11	38	1.84
50802397--50802635	18	13.3	18	67	21	67	30	11	10	47	1.74
50802436--50802606	35	4.9	35	79	7	168	31	11	10	46	1.73
50802719--50802772	27	2.0	27	96	0	99	27	22	20	29	1.98
50804358--50804391	17	2.0	17	88	0	50	35	8	8	47	1.66
50804361--50804790	38	11.7	33	73	17	198	43	9	11	35	1.73
50804413--50804480	35	1.9	36	84	3	93	44	11	13	30	1.79
50804361--50804790	72	5.8	69	70	18	194	43	9	11	35	1.73
50804422--50804513	19	5.2	16	68	19	58	46	11	11	29	1.76
50804451--50804526	19	4.3	18	73	11	50	47	10	9	32	1.70
50804375--50804605	40	6.1	38	72	16	142	43	9	11	36	1.72
50804422--50804777	17	19.2	17	67	19	153	45	9	11	33	1.73
50805262--50805334	1	73.0	1	75	0	65	0	12	0	87	0.54
50805265--50805334	8	8.6	8	83	13	90	0	12	0	87	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50805262--50805334	22	3.5	21	83	9	87	0	12	0	87	0.54
50805335--50805375	14	2.7	15	82	17	50	2	29	36	31	1.71
50805583--50805617	13	2.6	13	90	4	52	0	34	0	65	0.93
50806145--50806269	30	4.2	30	86	2	144	38	5	23	32	1.78
50806448--50807129	76	8.8	75	87	7	938	36	18	15	28	1.92
50806448--50807103	236	2.8	233	88	7	935	36	19	16	28	1.93
50806448--50807129	312	2.2	310	88	4	1020	36	18	15	28	1.92
50807100--50807157	30	2.0	29	82	3	71	48	6	12	32	1.67
50807975--50808078	9	10.8	9	76	11	73	0	7	9	81	0.91
50807975--50808066	39	2.3	38	87	10	132	0	8	10	80	0.91
50808004--50808078	20	3.8	20	82	10	93	1	6	8	84	0.85
50807977--50808078	39	2.6	40	84	7	120	0	7	9	81	0.92
50807995--50808078	11	7.1	11	76	17	62	1	7	8	83	0.87
50807975--50808078	31	3.5	29	78	8	102	0	7	9	81	0.91
50811661--50811697	4	9.2	4	93	0	65	54	0	21	24	1.45
50813435--50813540	19	5.9	17	67	21	56	45	12	11	31	1.77
50813400--50813812	72	5.6	72	72	15	217	43	9	12	34	1.75
50813461--50813811	17	19.2	19	67	15	147	44	9	12	33	1.75
50813414--50813812	38	10.8	37	72	14	197	43	9	12	34	1.74
50813544--50813584	20	2.0	20	90	4	64	36	7	17	39	1.77
50813461--50813747	56	5.3	54	73	15	202	44	9	12	33	1.75
50813398--50813807	17	22.2	20	68	21	90	42	9	12	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50814289--50814384	7	15.8	6	80	15	85	0	15	0	84	0.63
50814297--50814384	1	88.0	1	72	0	68	0	13	0	86	0.57
50814296--50814380	22	3.9	21	80	10	98	0	15	0	84	0.62
50814385--50814425	14	2.7	15	82	17	50	2	29	36	31	1.71
50815184--50815308	30	4.2	30	81	6	128	36	4	24	34	1.74
50819193--50819462	17	15.2	17	71	17	133	30	13	10	46	1.76
50819231--50819435	35	5.9	36	74	6	188	30	13	10	46	1.76
50819226--50819462	52	4.6	52	78	6	189	29	13	10	46	1.77
50819671--50819699	14	2.1	14	100	0	58	55	0	0	44	0.99
50826913--50826951	18	2.1	19	85	4	53	74	0	23	2	0.94
50827053--50827302	115	2.3	109	86	6	346	27	1	13	57	1.46
50830231--50830271	22	2.0	21	86	13	59	14	48	19	17	1.81
50831106--50831132	13	2.1	13	100	0	54	29	0	0	70	0.88
50835470--50835507	17	2.2	17	90	0	58	47	0	2	50	1.15
50835478--50835522	9	5.1	9	82	15	58	44	0	2	53	1.13
50836883--50836953	33	2.2	33	85	7	92	19	21	22	36	1.95
50836883--50836990	39	3.1	32	83	11	101	19	22	22	36	1.95
50836910--50836996	39	2.2	39	93	0	147	18	21	21	37	1.94
50836910--50837034	39	3.0	44	81	9	136	18	19	22	40	1.92
50837642--50837670	9	3.2	9	100	0	58	20	0	34	44	1.52
50848094--50848156	28	2.2	28	81	13	76	25	7	4	61	1.43
50848318--50848384	27	2.4	29	73	12	77	32	8	8	49	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50850839--50850966	42	3.0	42	77	15	129	31	27	19	21	1.98
50851837--50851882	25	1.9	23	83	16	58	39	13	0	47	1.42
50854668--50854717	21	2.4	21	79	0	55	18	30	0	52	1.46
50856496--50856582	21	4.1	21	81	7	104	35	22	21	19	1.96
50856496--50856582	44	2.0	41	82	6	102	35	22	21	19	1.96
50856765--50856842	36	2.1	37	86	6	106	32	20	1	46	1.59
50856894--50856933	16	2.5	16	88	11	64	25	25	0	50	1.50
50857600--50857634	14	2.5	14	90	9	54	0	14	5	80	0.89
50857787--50857824	14	2.4	17	87	12	55	52	2	0	44	1.14
50857816--50857865	21	2.5	20	76	3	55	52	2	0	46	1.12
50889137--50889181	21	2.1	21	83	0	54	44	26	0	28	1.55
50891470--50891515	11	4.2	11	86	8	58	23	28	0	47	1.52
50891470--50891512	10	4.0	10	82	11	50	23	30	0	46	1.52
50893346--50893388	18	2.4	18	88	0	59	18	27	9	44	1.80
50893802--50893897	34	2.9	33	80	10	110	41	6	6	45	1.54
50893861--50894070	116	1.8	117	80	9	259	41	5	6	46	1.52
50897056--50897472	126	3.3	126	91	0	674	27	21	18	32	1.97
50897505--50897778	94	2.9	97	79	4	283	41	17	2	37	1.65
50903646--50903694	24	2.0	24	100	0	98	32	12	8	46	1.71
50909128--50909260	66	2.0	66	92	0	221	37	17	6	39	1.74
50912918--50912961	22	2.0	23	82	8	56	22	11	0	65	1.24
50917938--50917969	15	2.1	15	100	0	64	6	28	25	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50919942--50920177	49	4.8	50	74	7	182	33	19	26	20	1.97
50919950--50920177	98	2.3	97	85	3	312	31	20	27	20	1.98
50920317--50920489	53	3.2	53	70	14	131	31	19	24	24	1.98
50938927--50938976	20	2.5	20	87	12	68	56	8	0	36	1.29
50938956--50939002	24	1.9	25	86	4	69	48	2	2	46	1.25
50940802--50940831	2	15.0	2	100	0	60	50	0	0	50	1.00
50942416--50942454	18	2.2	18	85	0	51	30	10	2	56	1.46
50951465--50951512	23	2.1	23	92	0	78	25	18	20	35	1.95
50953025--50953059	16	2.1	18	89	10	56	42	0	0	57	0.99
50964691--50964732	3	14.0	3	84	0	57	40	0	33	26	1.56
50967989--50968065	27	2.9	27	90	3	120	16	24	38	19	1.92
50968285--50968322	19	2.0	19	89	0	58	50	7	5	36	1.54
50968418--50968539	22	4.9	26	82	17	161	53	12	0	34	1.39
50968365--50968536	49	3.6	49	85	6	235	53	13	0	32	1.44
50968579--50968650	27	2.7	27	93	0	117	34	0	12	52	1.39
50968743--50968778	11	3.3	11	88	0	54	38	5	5	50	1.49
50968941--50968985	22	2.2	20	92	8	72	26	2	0	71	0.98
50969088--50969145	27	2.1	27	93	0	98	17	32	20	29	1.95
50969162--50969189	5	5.6	5	100	0	56	21	57	21	0	1.41
50969238--50969273	18	2.0	18	89	10	56	58	0	0	41	0.98
50976667--50976716	16	3.2	16	67	16	50	52	10	0	38	1.35
50976719--50976753	15	2.2	16	90	5	54	45	2	0	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50980288--50980352	31	2.1	31	86	8	89	63	1	1	33	1.13
50983323--50983379	11	5.1	11	73	12	53	66	3	0	29	1.08
50992518--50992566	22	2.3	21	80	13	55	46	2	2	48	1.25
50992812--50992863	13	4.1	13	80	5	61	44	5	1	48	1.38
50996485--50996607	45	2.7	46	83	10	132	54	4	6	34	1.48
50998350--50998390	15	2.7	15	88	3	55	46	0	2	51	1.14
51003170--51003232	19	3.6	16	76	16	54	63	3	0	33	1.10
51003170--51003228	18	3.4	17	81	11	57	64	3	0	32	1.10
51018122--51018201	24	3.3	24	77	7	72	46	1	1	51	1.17
51018134--51018200	25	2.6	26	79	9	75	50	1	1	46	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196