genome.fa.s25.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  143  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42371462--42371510	15	3.4	14	80	8	53	48	24	0	26	1.51
42371447--42371500	8	7.1	8	78	16	53	50	24	0	25	1.50
42371455--42371521	29	2.3	30	87	5	93	46	26	0	26	1.53
42374700--42375266	125	4.5	125	83	4	651	30	22	16	30	1.96
42374700--42375234	251	2.1	250	89	2	815	30	22	17	30	1.97
42379157--42379221	30	2.1	31	97	2	123	36	18	13	30	1.90
42379837--42379875	8	4.8	8	83	3	51	74	0	0	25	0.82
42379836--42379874	18	2.2	18	95	0	69	76	0	0	23	0.78
42380102--42380163	6	9.8	6	73	16	54	24	1	0	74	0.91
42380112--42380163	20	2.7	20	83	13	65	26	1	0	71	0.97
42380102--42380163	17	3.3	19	80	13	74	24	1	0	74	0.91
42382353--42382552	99	2.0	101	98	1	386	35	17	19	28	1.94
42390195--42390235	16	2.5	15	88	11	55	53	2	0	43	1.13
42390221--42390662	214	2.1	213	91	4	712	43	6	7	42	1.59
42396367--42396402	17	2.1	17	94	0	63	22	25	8	44	1.80
42396623--42396941	41	7.8	41	87	2	417	18	20	31	29	1.97
42402623--42402863	43	5.6	43	84	2	153	21	13	31	32	1.93
42402665--42402940	43	6.4	43	83	0	284	22	13	32	31	1.92
42402706--42402948	85	2.8	85	85	1	281	21	13	33	31	1.92
42403042--42403084	22	2.0	22	90	0	68	41	25	20	11	1.86
42405152--42405209	28	2.0	29	87	9	84	65	1	15	17	1.36
42405933--42405992	25	2.4	25	85	2	84	25	26	1	46	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42408491--42408616	64	2.0	64	93	0	216	28	4	25	41	1.75
42415001--42415025	7	3.6	7	100	0	50	28	28	0	44	1.55
42419270--42419306	13	2.8	14	80	16	51	45	0	0	54	1.00
42421310--42421362	26	2.0	26	85	0	70	24	24	18	32	1.97
42439876--42439921	21	2.1	21	88	8	65	34	4	2	58	1.30
42446389--42446449	28	2.1	30	84	9	81	60	0	1	37	1.07
42449065--42449105	21	2.0	21	100	0	82	34	0	9	56	1.32
42449217--42449374	38	4.5	37	65	25	99	44	1	5	48	1.34
42449154--42449373	102	2.2	102	92	1	361	42	1	5	50	1.36
42449256--42449548	121	2.4	118	89	2	408	44	1	3	50	1.25
42449083--42449494	223	1.9	222	94	1	727	43	1	4	50	1.32
42449478--42449512	18	2.0	17	88	5	52	45	0	0	54	0.99
42452904--42452934	12	2.7	11	95	5	53	35	0	0	64	0.94
42457625--42457661	7	5.6	7	90	3	51	67	0	18	13	1.23
42457624--42457661	14	2.9	14	88	11	62	68	0	18	13	1.21
42457624--42457673	14	3.6	14	84	10	50	64	0	22	14	1.29
42458910--42459782	43	20.7	43	66	14	156	28	20	22	27	1.99
42458896--42459822	127	7.3	127	91	0	1437	29	21	22	27	1.99
42459111--42459992	169	5.2	171	70	11	558	28	21	23	27	1.99
42459501--42460079	296	1.9	298	87	1	849	27	21	23	27	1.99
42459837--42460073	127	1.9	126	87	2	350	24	21	24	28	1.99
42461309--42461339	12	2.7	11	95	5	53	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42472948--42472983	18	2.0	18	100	0	72	44	11	16	27	1.82
42474787--42475010	88	2.6	87	76	2	223	27	22	26	23	2.00
42475390--42475467	37	2.1	38	87	2	113	28	16	24	30	1.97
42475211--42476201	126	7.7	126	89	3	1505	28	15	25	30	1.96
42475427--42476506	89	12.4	90	77	7	859	29	15	24	30	1.96
42475211--42476394	259	4.6	258	89	2	1653	29	15	25	30	1.96
42475211--42476216	385	2.6	388	91	3	1609	28	15	25	30	1.96
42475914--42475985	37	1.9	37	88	2	108	26	16	26	30	1.97
42475213--42476332	385	2.9	384	88	4	1585	29	15	25	30	1.96
42476097--42476506	44	9.2	44	71	9	260	31	14	24	30	1.94
42475453--42476508	44	24.3	44	72	10	207	30	15	24	30	1.95
42484660--42484687	14	2.0	14	100	0	56	14	21	0	64	1.29
42485795--42485884	3	30.3	3	82	2	92	0	36	0	63	0.95
42487344--42487403	25	2.3	26	80	2	68	50	0	10	40	1.36
42487391--42487439	13	3.7	13	77	2	53	57	2	2	38	1.22
42487927--42488016	36	2.5	36	98	0	171	20	26	31	22	1.98
42488631--42488697	26	2.7	27	76	21	74	8	10	28	52	1.66
42490471--42490713	42	5.9	41	75	11	158	18	23	23	34	1.96
42490516--42490714	83	2.4	82	80	7	215	18	21	24	35	1.95
42490471--42490713	41	5.9	41	73	13	178	18	23	23	34	1.96
42491648--42491707	27	2.2	28	82	8	72	46	5	6	41	1.52
42492135--42492398	116	2.3	116	79	5	273	27	17	19	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42493846--42493884	21	1.9	20	94	5	69	28	23	15	33	1.95
42494372--42494427	29	2.0	28	96	3	103	42	3	17	35	1.67
42494380--42494427	14	3.4	14	72	16	53	39	2	20	37	1.65
42496798--42496862	21	3.1	21	80	8	78	36	18	41	3	1.66
42497326--42497596	85	3.2	83	86	6	332	25	23	21	29	1.99
42497327--42497596	128	2.1	129	83	8	347	25	24	21	29	1.99
42497326--42497596	43	6.4	42	85	6	343	25	23	21	29	1.99
42498277--42498331	25	2.2	26	83	3	67	34	3	1	60	1.25
42512163--42512217	3	17.7	3	81	7	65	61	1	5	30	1.29
42512163--42512226	19	3.4	18	85	8	74	60	3	6	29	1.36
42512178--42512226	22	2.2	22	78	7	55	61	4	6	28	1.38
42514035--42514319	152	1.9	151	87	3	421	25	23	21	29	1.99
42514144--42514573	100	4.3	100	91	0	682	25	22	20	32	1.98
42514144--42514573	199	2.2	200	92	0	700	25	22	20	32	1.98
42514043--42514568	50	10.5	50	70	5	249	24	23	21	30	1.99
42522506--42522545	20	2.0	20	100	0	80	30	15	25	30	1.95
42526500--42526583	3	26.7	3	79	13	89	63	4	4	27	1.35
42532857--42532886	16	1.9	15	93	6	51	70	13	3	13	1.30
42532918--42532947	15	2.0	15	93	0	51	66	10	0	23	1.21
42534608--42534791	44	4.2	44	67	8	115	27	25	18	28	1.98
42534498--42535095	131	4.6	131	86	1	858	26	24	18	29	1.98
42534634--42534815	44	4.2	44	67	6	127	28	28	15	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42547197--42547235	4	10.0	4	83	5	53	71	5	0	23	1.05
42547197--42547236	15	2.6	15	88	4	53	70	7	0	22	1.12
42547203--42547243	19	2.2	19	90	0	64	65	9	0	24	1.22
42548076--42548123	11	4.3	11	78	2	51	83	4	6	6	0.91
42548076--42548123	22	2.1	22	92	3	78	83	4	6	6	0.91
42548086--42548126	17	2.6	17	81	11	52	82	4	4	7	0.93
42550897--42550932	18	1.9	18	88	5	54	58	2	0	38	1.13
42551912--42551963	17	3.0	17	91	5	86	46	11	13	28	1.78
42552721--42552789	7	10.0	7	75	18	56	0	20	0	79	0.73
42552713--42552786	19	3.9	18	81	11	78	0	21	0	78	0.75
42552716--42552794	23	3.4	22	77	19	88	0	22	0	77	0.77
42553322--42553381	29	2.1	29	87	0	84	41	3	20	35	1.68
42553743--42554532	75	10.5	75	84	5	943	32	21	17	28	1.96
42553743--42554557	231	3.6	229	86	4	1089	33	20	17	28	1.95
42553743--42554538	151	5.3	149	83	5	940	32	20	17	28	1.96
42566217--42566257	17	2.3	18	91	4	66	46	7	9	36	1.65
42566220--42566264	17	2.6	18	74	22	51	46	6	11	35	1.66
42566654--42566700	21	2.3	21	92	7	80	0	21	0	78	0.75
42567701--42567738	17	2.3	16	90	4	58	89	10	0	0	0.49
42567707--42567738	12	2.7	12	95	0	55	90	9	0	0	0.45
42571179--42571251	3	24.3	3	91	0	74	28	36	4	30	1.76
42575360--42575392	16	2.1	16	88	11	50	60	0	6	33	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42584925--42585018	21	4.5	21	70	15	61	22	18	15	43	1.87
42584959--42585077	42	2.8	43	81	6	136	15	20	19	44	1.87
42589054--42589092	18	2.2	18	85	0	51	61	2	23	12	1.43
42597471--42597564	44	2.2	43	90	5	145	31	21	8	38	1.83
42597625--42597659	2	17.5	2	93	0	61	51	2	45	0	1.16
42599804--42599851	24	2.0	24	84	8	62	68	12	2	16	1.29
42610983--42611033	7	8.0	7	81	16	58	0	56	0	43	0.99
42610983--42611033	6	8.2	6	84	2	57	0	56	0	43	0.99
42610989--42611033	18	2.4	18	92	3	72	0	55	0	44	0.99
42611093--42611142	25	2.0	25	92	0	82	4	32	4	60	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196