genome.fa.s25.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  175  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51021217--51021259	7	6.0	7	78	5	50	46	0	39	13	1.44
51031935--51031970	3	12.0	3	100	0	72	66	0	0	33	0.92
51048600--51048666	27	2.4	27	92	5	107	16	4	13	65	1.42
51049078--51049119	17	2.4	17	92	4	66	35	26	9	28	1.88
51049079--51049119	9	4.7	9	84	6	57	34	26	9	29	1.88
51049165--51049225	17	3.4	17	70	12	59	50	14	3	31	1.59
51049123--51049225	37	2.9	37	94	5	178	49	14	4	31	1.64
51049148--51049208	20	3.2	20	68	13	65	44	16	6	32	1.73
51051608--51051632	7	3.6	7	100	0	50	72	0	0	28	0.86
51053205--51053233	2	14.5	2	100	0	58	51	0	0	48	1.00
51056344--51056402	27	2.3	27	83	11	72	32	25	0	42	1.55
51056368--51056413	23	2.0	24	82	4	58	32	26	0	41	1.56
51056552--51056583	3	10.7	3	100	0	64	65	0	0	34	0.93
51057220--51057256	14	2.6	14	82	0	56	0	24	0	75	0.80
51057781--51057829	9	5.6	9	81	13	66	55	0	2	42	1.11
51058906--51058944	16	2.4	16	100	0	78	51	25	17	5	1.66
51071858--51071937	29	2.7	29	76	5	81	43	8	1	46	1.42
51071955--51072045	47	1.9	47	86	4	130	34	5	4	56	1.43
51072441--51072761	109	3.0	107	90	3	491	30	17	18	34	1.93
51076444--51076493	3	17.7	3	80	15	54	74	0	26	0	0.83
51076430--51076493	20	3.3	20	87	8	80	75	0	23	1	0.90
51076448--51076493	14	3.5	13	77	17	51	76	0	23	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51076445--51076491	17	2.8	18	90	9	73	76	0	23	0	0.78
51077732--51078044	89	3.6	89	83	8	412	29	25	22	22	1.99
51077855--51078011	81	1.9	81	92	0	260	28	25	24	22	2.00
51078076--51078277	44	4.7	42	71	17	130	29	17	25	27	1.97
51078303--51078411	44	2.5	44	90	3	175	25	15	28	30	1.96
51078077--51078366	132	2.2	132	91	1	474	29	17	24	27	1.98
51078433--51078618	101	1.9	100	85	3	257	30	20	22	26	1.98
51078673--51079006	44	7.8	41	69	8	175	30	19	21	28	1.97
51078624--51079001	129	2.9	127	85	3	479	30	20	21	28	1.98
51078849--51079006	85	1.9	85	80	5	185	29	18	21	29	1.97
51078934--51079036	44	2.3	44	83	0	116	31	17	19	32	1.95
51080480--51080521	20	2.1	20	82	8	50	28	9	2	59	1.41
51080679--51080769	47	1.9	47	86	4	130	34	5	4	56	1.43
51081178--51081489	109	2.9	107	89	2	466	30	16	18	34	1.93
51083240--51083299	29	2.1	29	81	6	68	40	3	5	51	1.40
51085193--51085292	50	2.0	50	100	0	200	28	12	24	36	1.91
51089787--51089887	50	2.0	50	98	0	193	42	19	4	32	1.73
51092622--51092669	5	9.2	5	88	6	69	58	0	0	41	0.98
51092620--51092669	21	2.3	21	83	13	57	58	0	0	42	0.98
51096556--51096593	11	3.5	11	85	10	51	28	10	0	60	1.30
51098714--51098752	20	2.0	20	100	0	78	41	0	23	35	1.55
51102107--51102140	15	2.3	15	94	0	59	0	20	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51103135--51103164	3	10.0	3	100	0	60	0	0	33	66	0.92
51123354--51123474	9	13.4	9	90	0	161	42	19	9	28	1.83
51123354--51123474	27	4.5	27	86	0	179	42	19	9	28	1.83
51131910--51131950	18	2.2	19	86	8	57	68	0	2	29	1.03
51132968--51133008	20	2.0	20	86	9	57	29	0	0	70	0.87
51132968--51133016	18	2.6	18	84	15	55	32	0	0	67	0.91
51134183--51134446	45	5.9	45	94	0	456	39	15	19	25	1.91
51135062--51135086	13	1.9	13	100	0	50	88	4	0	8	0.64
51140493--51140754	45	5.9	45	93	1	438	39	15	19	25	1.91
51142334--51142380	3	16.0	3	91	4	78	68	2	0	29	1.02
51157133--51157190	31	1.9	29	86	6	80	50	10	3	36	1.54
51157130--51157194	31	2.3	27	80	15	76	49	9	3	38	1.51
51158878--51158916	21	1.9	21	94	5	71	48	0	5	46	1.24
51159071--51159124	22	2.5	21	85	5	81	64	1	33	0	1.04
51162467--51162508	16	2.7	15	85	7	57	57	2	2	38	1.25
51162888--51163104	22	8.8	25	72	18	179	54	11	0	33	1.42
51162912--51163247	22	15.0	22	70	16	151	55	11	0	32	1.42
51162888--51163110	27	9.0	27	72	19	164	54	10	0	33	1.41
51162890--51163106	98	2.2	98	94	0	380	54	11	0	33	1.42
51162888--51163110	49	4.6	49	88	0	338	54	10	0	33	1.41
51163420--51163463	3	15.3	3	88	9	56	0	38	0	61	0.96
51163416--51163464	14	3.6	14	91	2	73	0	38	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51163416--51163463	17	2.9	17	90	3	71	0	37	0	62	0.95
51163424--51163470	11	4.5	11	82	12	55	0	40	0	59	0.97
51163418--51163475	17	3.6	16	77	15	66	0	39	0	60	0.97
51163426--51163475	14	3.6	13	86	5	55	0	40	0	60	0.97
51163654--51163681	5	5.6	5	100	0	56	21	60	17	0	1.36
51169030--51169070	21	2.0	21	85	0	55	39	0	7	53	1.29
51171085--51171273	21	9.0	21	64	0	81	45	16	21	16	1.85
51171082--51171251	42	4.0	42	83	3	198	45	17	21	14	1.84
51172433--51172471	17	2.3	17	86	8	53	71	0	0	28	0.86
51184989--51185068	29	3.0	28	68	30	75	45	0	1	53	1.08
51185015--51185066	22	2.3	23	83	9	72	48	0	0	51	1.00
51185130--51185169	17	2.4	17	95	0	71	62	5	0	32	1.17
51193176--51193269	34	3.1	30	70	21	79	52	1	2	44	1.20
51193291--51193331	19	2.1	20	90	4	66	36	0	0	63	0.95
51201937--51201990	24	2.3	24	83	3	74	25	12	22	38	1.90
51203407--51203562	32	4.9	32	83	0	186	32	9	16	41	1.81
51206282--51206330	22	2.3	22	75	6	57	63	2	0	34	1.06
51210041--51210087	16	2.8	17	81	15	53	21	2	2	74	1.03
51210248--51210292	23	2.0	23	90	0	72	46	2	8	42	1.47
51220832--51220995	43	3.8	43	76	7	154	25	15	26	32	1.96
51227272--51227326	25	2.2	25	100	0	110	21	18	16	43	1.88
51229316--51229355	20	2.0	20	85	0	53	50	12	10	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51229304--51229370	34	1.9	35	90	3	109	46	13	8	31	1.74
51236205--51236302	23	4.3	23	93	2	171	32	26	20	20	1.97
51236205--51236302	45	2.2	46	92	3	171	32	26	20	20	1.97
51237857--51237973	39	3.0	39	93	1	200	49	28	4	17	1.66
51240811--51240861	24	2.1	24	85	0	66	50	7	3	37	1.50
51241383--51241433	24	2.1	24	85	0	66	50	7	3	37	1.50
51240744--51242459	572	3.0	572	99	0	3371	36	18	12	32	1.88
51241955--51242005	24	2.1	24	85	0	66	50	7	3	37	1.50
51243960--51244014	8	6.8	8	76	12	58	36	0	1	61	1.06
51244221--51244259	17	2.3	17	90	0	60	71	0	28	0	0.86
51244989--51245138	45	3.3	45	88	1	212	21	18	19	40	1.91
51245118--51245156	18	2.1	19	85	4	53	23	20	12	43	1.86
51249569--51249620	24	2.2	24	82	0	59	50	5	3	40	1.45
51254118--51254248	52	2.6	51	82	9	146	50	2	5	41	1.37
51257115--51257144	6	4.8	6	95	4	51	83	0	3	13	0.77
51268886--51268926	22	1.9	22	90	5	66	24	12	4	58	1.53
51268963--51268994	15	2.1	16	88	11	50	31	0	0	68	0.90
51273684--51273709	3	8.7	3	100	0	52	69	0	30	0	0.89
51274886--51274937	27	2.0	26	81	11	61	30	3	13	51	1.58
51286366--51286434	30	2.3	29	80	11	77	52	2	4	40	1.36
51293855--51293916	30	2.1	30	100	0	124	40	3	19	37	1.68
51293865--51293924	30	2.2	27	85	14	79	38	3	20	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51300676--51300718	18	2.4	18	92	7	70	44	0	0	55	0.99
51301700--51301751	25	2.1	25	85	0	68	26	5	7	59	1.48
51303437--51303500	29	2.2	29	86	8	87	48	3	0	48	1.17
51304772--51304831	28	2.1	28	96	0	111	68	0	0	31	0.90
51304736--51304913	37	4.6	39	76	10	159	63	0	1	34	1.06
51304791--51304862	20	3.8	20	80	10	96	68	0	0	31	0.90
51304818--51304880	28	2.2	29	80	2	74	66	0	3	30	1.07
51304742--51304889	38	3.9	37	82	7	145	64	0	1	33	1.07
51304811--51304909	49	2.1	47	90	7	155	66	0	2	31	1.03
51305242--51305276	16	2.2	16	94	0	61	40	0	8	51	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196