genome.fa.s25.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Length:  58873029

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   

This is table  147  of  196  ( 23409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43627251--43627302	10	5.4	10	81	6	63	69	0	28	1	0.99
43627635--43627685	17	2.8	17	85	14	59	80	0	19	0	0.71
43627635--43627681	6	7.8	6	86	9	69	80	0	19	0	0.70
43627635--43627686	19	2.9	18	83	13	63	78	0	21	0	0.74
43627635--43627680	23	2.0	24	91	8	78	82	0	17	0	0.67
43628179--43628217	19	2.0	20	85	9	55	33	5	7	53	1.51
43628140--43628319	17	10.4	17	71	16	120	35	11	10	42	1.75
43628207--43628311	51	2.1	51	85	10	144	32	11	11	44	1.76
43628277--43628356	39	2.1	38	86	9	108	35	15	11	38	1.83
43628262--43628356	39	2.5	37	80	14	106	34	14	11	38	1.83
43638070--43639002	114	8.2	114	83	6	927	30	18	23	27	1.98
43638462--43639002	114	4.8	114	95	0	958	30	18	22	28	1.97
43639120--43639155	18	2.0	18	89	10	56	25	0	5	69	1.10
43640065--43640144	7	11.3	7	86	1	106	6	0	52	41	1.27
43640070--43640156	21	4.1	21	88	5	106	6	0	47	45	1.29
43641740--43641776	16	2.3	16	95	0	65	27	10	8	54	1.63
43641836--43641974	67	2.1	67	95	2	253	36	4	13	45	1.64
43642098--43642555	76	6.1	76	98	0	877	40	7	5	47	1.53
43642643--43642685	16	2.7	16	92	0	68	48	16	2	32	1.58
43642726--43642933	9	23.8	9	69	13	130	45	21	1	31	1.62
43642771--43642892	62	2.0	61	80	6	138	48	21	0	29	1.56
43642793--43642933	25	5.4	25	71	13	88	46	21	1	31	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43648468--43648537	21	3.3	21	86	4	88	41	20	35	2	1.67
43648899--43649183	43	6.7	42	89	4	394	22	22	21	34	1.97
43653371--43653600	92	2.6	89	85	6	277	37	16	12	33	1.86
43654088--43654240	77	2.0	77	96	0	279	28	2	35	33	1.71
43655572--43656096	27	19.5	27	85	1	586	34	18	20	25	1.96
43656133--43656191	24	2.5	24	77	5	66	20	5	23	50	1.67
43656316--43656366	26	2.0	26	88	0	75	15	23	27	33	1.95
43656362--43656550	32	5.9	31	83	3	189	22	20	18	38	1.94
43656365--43656550	64	2.9	64	85	0	237	22	20	18	38	1.94
43656362--43656564	96	2.1	95	82	0	235	22	20	18	38	1.93
43656556--43656602	22	2.1	22	84	0	58	19	17	17	46	1.84
43657566--43657637	9	7.4	9	73	14	63	62	2	5	29	1.32
43657542--43657619	21	3.8	21	78	11	72	61	1	6	30	1.29
43657564--43657637	20	3.8	20	76	13	73	63	2	5	28	1.30
43657605--43657648	18	2.3	19	88	7	63	61	6	6	25	1.46
43657789--43657964	9	18.3	10	68	17	72	31	4	2	61	1.28
43657788--43657914	28	4.5	28	72	15	109	31	4	1	62	1.25
43657837--43657933	28	3.5	27	75	14	90	31	3	2	62	1.22
43657789--43657924	19	7.2	19	71	12	84	30	4	1	63	1.23
43657837--43657944	56	1.9	58	84	7	150	31	4	1	62	1.26
43657981--43658026	19	2.4	19	85	3	56	32	2	2	63	1.19
43661297--43661321	13	1.9	13	100	0	50	24	8	0	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43661397--43661431	16	2.2	16	89	0	52	22	8	2	65	1.34
43663744--43663805	31	2.0	31	100	0	124	29	6	25	38	1.81
43675644--43675763	61	2.0	61	95	1	215	33	10	8	48	1.67
43680264--43680419	82	1.9	82	93	0	267	17	12	20	48	1.80
43684151--43684198	22	2.2	21	80	20	55	41	0	0	58	0.98
43685410--43685451	19	2.2	19	91	8	68	30	2	9	57	1.44
43691324--43691370	22	2.1	22	84	7	60	46	0	8	44	1.33
43694044--43694069	6	4.3	6	100	0	52	46	19	0	34	1.50
43698417--43698461	23	2.0	23	90	0	72	40	17	8	33	1.81
43700963--43700994	16	2.0	16	100	0	64	25	31	25	18	1.98
43705016--43705099	43	2.0	43	83	9	109	19	19	29	32	1.96
43705862--43705899	16	2.4	16	86	4	51	36	0	15	47	1.46
43714715--43714845	64	2.0	64	100	0	262	29	12	21	35	1.91
43719200--43719289	25	3.6	25	72	11	69	17	24	18	38	1.92
43719249--43719438	25	7.7	25	72	10	117	16	26	21	35	1.95
43719431--43719485	25	2.2	25	83	0	65	25	20	21	32	1.97
43720329--43720383	23	2.4	23	79	14	60	58	3	0	38	1.16
43722247--43722306	28	2.1	28	82	11	70	46	18	15	20	1.84
43728364--43728416	25	2.1	25	96	0	97	32	24	0	43	1.55
43732878--43732921	21	2.1	22	83	8	56	27	11	9	52	1.67
43735656--43735695	19	2.2	19	86	13	57	67	0	5	27	1.11
43754340--43754370	15	2.0	16	93	6	55	25	0	25	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43754342--43754470	61	2.1	61	81	4	143	31	2	22	44	1.65
43755641--43755675	18	1.9	18	88	11	54	37	0	5	57	1.23
43760184--43760233	22	2.3	22	96	0	91	28	34	0	38	1.57
43760337--43760394	24	2.5	23	81	10	57	37	0	3	58	1.15
43762397--43762586	91	2.0	97	90	9	306	41	6	11	41	1.66
43762611--43763178	29	19.7	29	94	0	942	44	25	0	30	1.57
43763223--43763347	56	2.2	56	90	2	189	39	12	6	41	1.69
43764941--43764971	2	15.5	2	93	0	53	45	0	3	51	1.17
43765165--43765220	29	2.0	28	86	10	78	62	1	7	28	1.32
43766761--43767195	44	10.2	44	84	5	474	28	25	14	31	1.94
43767141--43767540	132	3.0	131	88	2	435	28	24	17	30	1.97
43767252--43767562	44	7.1	44	67	2	149	27	24	18	29	1.98
43767185--43767560	132	2.8	132	94	0	626	27	24	18	30	1.98
43767456--43767657	108	1.9	108	88	2	307	26	24	18	30	1.98
43767673--43768015	44	7.8	44	75	8	329	28	23	16	30	1.96
43767672--43768053	88	4.3	89	90	1	563	28	23	17	30	1.97
43769146--43769228	21	4.0	21	90	7	125	14	18	0	67	1.23
43769154--43769228	7	10.7	7	86	11	100	13	18	0	68	1.22
43772092--43772135	19	2.3	20	84	7	56	40	11	20	27	1.86
43773968--43774009	18	2.3	18	84	8	50	66	4	7	21	1.35
43780429--43780500	27	2.5	28	75	8	74	41	2	11	44	1.54
43781071--43781195	44	2.9	43	85	2	169	20	18	32	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43781211--43781386	43	4.1	43	82	2	201	30	30	18	20	1.97
43781179--43781379	86	2.3	86	83	0	249	28	30	19	21	1.98
43781737--43781798	21	3.0	21	82	0	70	6	41	14	37	1.72
43781739--43781808	21	3.3	21	81	0	68	7	38	15	38	1.75
43781785--43781925	66	2.1	66	83	5	169	14	28	17	40	1.88
43781818--43781948	66	2.0	66	83	3	165	14	25	18	41	1.88
43785642--43785992	9	41.2	9	68	18	100	39	1	13	45	1.53
43785647--43785741	16	5.9	16	73	9	95	34	2	18	44	1.62
43785661--43785775	25	4.7	25	74	8	101	37	1	17	43	1.59
43785797--43785829	16	2.1	16	100	0	66	30	0	24	45	1.53
43785693--43785834	34	4.2	33	70	16	87	40	1	16	41	1.58
43785815--43786459	34	19.0	34	67	23	198	40	0	10	48	1.42
43785889--43785934	22	2.1	22	91	0	74	43	0	8	47	1.34
43785855--43786454	56	10.0	57	70	21	337	40	0	10	48	1.41
43785821--43786454	94	7.0	90	88	8	911	40	0	10	48	1.42
43785979--43786024	22	2.1	22	95	0	65	41	0	10	47	1.38
43786219--43786331	22	5.4	22	74	18	107	39	0	10	49	1.37
43786337--43786387	22	2.4	22	90	3	86	41	0	9	49	1.36
43786704--43786733	14	2.1	14	100	0	60	46	13	26	13	1.80
43786811--43787055	134	1.8	134	97	0	463	42	12	13	30	1.82
43789536--43789574	15	2.6	15	79	0	51	35	38	0	25	1.56
43790126--43790322	41	4.8	41	79	3	200	35	22	24	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43790126--43790323	82	2.4	82	87	0	270	34	22	24	17	1.96
43790381--43790476	40	2.5	40	81	6	108	20	29	21	28	1.98
43791442--43791466	13	1.9	13	100	0	50	44	8	16	32	1.76
43791704--43791755	26	2.0	26	100	0	104	30	19	23	26	1.98
43795726--43796021	44	6.9	44	67	16	129	29	17	21	31	1.97
43795703--43796504	132	6.1	132	92	1	1204	29	18	22	29	1.97
43795853--43796443	44	13.4	44	66	13	180	29	17	23	28	1.97
43800218--43800248	15	2.1	15	93	0	53	19	9	6	64	1.45
43800300--43800611	109	2.9	109	92	1	522	30	16	18	34	1.93
43802207--43802262	21	2.6	22	81	16	64	48	0	8	42	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196