genome.fa.s9.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  103  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33561197--33561491	80	3.7	80	86	4	402	30	24	21	23	1.99
33564663--33564714	6	8.7	6	82	0	68	17	5	0	76	0.97
33564663--33564714	24	2.2	24	89	6	79	17	5	0	76	0.97
33566293--33566322	14	2.1	14	93	0	51	20	6	3	70	1.25
33571691--33571743	21	2.5	22	93	3	90	50	1	0	47	1.12
33572260--33572340	27	3.1	27	82	10	114	33	18	19	28	1.96
33572258--33572334	24	3.1	24	83	9	100	31	19	18	31	1.96
33572260--33572366	51	2.1	51	81	6	119	35	16	19	28	1.94
33580539--33580725	52	3.6	52	86	1	241	25	12	24	36	1.91
33582883--33582922	20	2.0	21	90	5	64	17	17	12	52	1.74
33586855--33586879	13	1.9	13	100	0	50	40	4	8	48	1.51
33592253--33592431	92	1.9	92	96	0	331	36	12	15	35	1.85
33595203--33595250	23	2.0	24	88	8	71	20	0	8	70	1.12
33597264--33597609	174	2.0	174	98	0	674	25	15	19	39	1.91
33598201--33598321	45	2.7	44	90	2	179	34	16	20	28	1.94
33598680--33599189	123	4.1	124	85	6	647	52	2	12	31	1.53
33598792--33598857	33	2.0	33	85	2	89	59	1	10	28	1.40
33598684--33599180	247	2.0	252	86	3	711	52	2	12	32	1.54
33600130--33600251	35	3.4	35	80	6	138	58	7	9	25	1.55
33604009--33604061	15	3.4	15	76	7	52	37	1	3	56	1.28
33605069--33605127	29	2.0	29	90	0	91	33	33	10	22	1.87
33611182--33611368	36	5.2	36	86	0	239	32	12	22	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33611630--33611759	66	2.0	66	90	0	206	15	12	27	44	1.82
33611836--33612093	23	11.3	23	88	0	356	33	5	14	46	1.66
33611836--33612094	114	2.3	114	88	0	311	33	5	14	46	1.66
33619245--33619296	18	2.8	19	82	8	72	25	23	23	28	1.99
33624789--33624827	19	2.1	18	90	4	60	30	17	28	23	1.97
33637073--33637110	18	2.1	18	95	0	67	39	5	13	42	1.66
33637207--33637248	9	4.7	9	87	0	57	26	4	16	52	1.63
33637200--33637239	18	2.2	18	95	0	71	30	2	15	52	1.55
33639395--33639425	16	1.9	16	93	0	53	41	6	3	48	1.45
33641130--33641228	31	3.2	29	71	13	74	24	11	2	62	1.38
33647842--33649666	50	36.7	50	67	7	584	37	17	17	27	1.93
33647836--33649666	100	18.4	100	78	4	1516	37	17	17	27	1.93
33651327--33651367	22	1.9	21	85	14	57	17	4	4	73	1.19
33655009--33655150	41	3.4	41	92	0	221	38	11	23	26	1.89
33663217--33663257	21	2.0	20	90	4	64	51	29	7	12	1.66
33665831--33665855	5	5.0	5	100	0	50	60	0	40	0	0.97
33669991--33670100	54	2.0	54	94	0	193	34	11	8	45	1.71
33669870--33670221	175	2.0	175	94	1	625	41	8	8	41	1.67
33670123--33670171	22	2.3	22	86	10	66	57	2	8	32	1.40
33670245--33670292	21	2.2	22	85	10	64	58	2	8	31	1.39
33670045--33670624	122	4.8	122	90	2	828	44	7	9	39	1.65
33677828--33677908	21	3.9	21	76	7	76	33	25	11	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33720057--33720263	107	1.9	108	89	1	317	39	14	13	33	1.85
33722487--33722536	18	2.8	18	79	8	57	52	12	26	10	1.70
33737375--33737431	28	2.0	28	89	0	87	31	10	29	28	1.90
33744074--33744099	9	2.9	9	100	0	52	23	23	11	42	1.86
33747035--33747088	17	3.2	17	75	17	58	59	9	12	18	1.60
33747039--33747104	34	1.9	34	96	0	123	57	7	15	19	1.61
33747035--33747092	18	3.3	18	70	18	59	58	10	13	17	1.62
33755970--33756048	31	2.6	31	86	7	101	37	2	7	51	1.44
33759196--33759337	26	5.0	26	70	18	88	47	0	0	51	1.05
33759197--33759323	32	4.3	31	72	17	99	48	0	0	51	1.00
33759169--33759339	58	2.9	58	83	9	206	46	1	0	52	1.11
33759409--33759513	46	2.5	44	82	13	114	37	25	5	31	1.80
33759420--33759513	44	2.1	44	86	7	127	37	26	5	30	1.79
33770834--33770914	26	3.1	26	85	0	99	30	20	19	28	1.97
33771646--33771690	23	2.0	23	86	8	65	8	17	6	66	1.40
33798950--33798994	21	2.1	21	84	8	56	62	11	26	0	1.29
33804138--33804227	28	3.2	29	84	4	87	31	24	17	26	1.97
33804154--33804227	28	2.6	28	84	0	94	32	22	16	28	1.96
33804181--33804238	28	2.1	28	83	0	71	36	25	10	27	1.89
33804181--33804251	28	2.5	28	81	0	70	33	26	11	28	1.91
33804245--33804361	55	2.1	55	80	3	128	29	24	18	27	1.98
33804323--33804600	28	10.0	28	83	0	306	29	22	15	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33804323--33804600	56	5.0	56	85	0	342	29	22	15	32	1.94
33805503--33805567	34	1.9	34	93	0	112	20	18	6	55	1.63
33809297--33809340	23	1.9	23	86	9	63	22	9	11	56	1.62
33812665--33812692	11	2.5	11	100	0	56	71	10	0	17	1.14
33812847--33812881	3	11.7	3	100	0	70	68	0	0	31	0.90
33812856--33812898	15	2.9	14	86	6	50	72	2	2	23	1.08
33820232--33820279	24	2.0	24	84	12	62	16	8	4	70	1.27
33822505--33822552	17	2.8	17	77	0	51	22	16	8	52	1.71
33825240--33825530	45	6.5	45	79	4	295	26	17	23	32	1.97
33825240--33825530	89	3.2	90	84	3	338	26	17	23	32	1.97
33825495--33825584	31	2.9	31	86	1	119	20	24	22	33	1.97
33825598--33825739	45	3.1	45	80	4	160	26	16	25	31	1.97
33825829--33826012	97	1.9	97	83	4	237	19	23	16	40	1.91
33825828--33826044	49	4.5	49	77	2	188	18	24	16	39	1.91
33825829--33826044	97	2.2	97	80	3	229	18	25	16	39	1.91
33835997--33836026	12	2.6	11	90	10	51	53	36	0	10	1.35
33837459--33837502	21	2.0	22	86	4	63	52	9	31	6	1.59
33843294--33843319	12	2.2	12	100	0	52	15	19	7	57	1.62
33850077--33850436	200	1.8	200	86	1	524	33	20	17	28	1.96
33851290--33851346	28	2.0	28	86	0	78	26	24	22	26	2.00
33851298--33851393	28	3.4	28	83	9	108	31	18	22	27	1.97
33851327--33851443	28	4.2	28	74	7	96	37	17	19	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33851468--33851719	28	9.0	28	81	5	267	30	23	14	31	1.94
33851468--33851719	56	4.5	56	84	2	335	30	23	14	31	1.94
33851468--33851719	84	3.0	84	81	1	308	30	23	14	31	1.94
33854479--33854530	6	8.3	6	85	6	59	19	0	3	76	0.93
33865389--33865424	16	2.2	16	90	0	54	44	2	0	52	1.15
33865394--33865451	22	2.4	25	72	24	61	46	1	0	51	1.11
33872197--33872262	33	2.0	33	100	0	132	51	12	3	33	1.54
33873071--33873173	47	2.2	47	87	0	152	32	22	16	29	1.96
33873224--33873261	19	2.0	19	85	10	51	36	15	0	47	1.46
33882487--33882524	16	2.4	17	83	16	55	60	0	0	39	0.97
33884831--33885274	193	2.3	194	85	2	590	24	26	19	29	1.99
33889949--33890388	193	2.3	195	82	7	529	27	26	17	28	1.98
33901303--33901376	30	2.5	30	84	6	89	44	4	0	51	1.20
33902149--33902344	90	2.2	88	85	6	277	38	16	9	35	1.81
33907867--33907916	24	2.1	24	92	0	82	22	22	22	34	1.97
33907920--33908008	42	2.1	41	82	12	101	33	0	17	48	1.48
33909634--33909682	20	2.7	18	77	22	57	51	4	2	42	1.32
33913821--33913853	17	1.9	17	100	0	66	51	0	36	12	1.39
33913824--33913862	9	4.4	9	83	6	53	46	0	38	15	1.46
33919342--33919371	2	15.0	2	100	0	60	50	50	0	0	1.00
33923639--33923763	48	2.6	47	81	8	155	40	24	15	19	1.90
33924190--33924593	204	2.0	205	89	1	623	39	21	9	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33926062--33926103	22	1.9	22	85	9	59	69	7	19	4	1.31
33930202--33930258	29	2.0	29	86	6	80	29	10	1	57	1.42
33934491--33934556	30	2.2	31	88	2	98	27	6	9	57	1.53
33934963--33935097	60	2.2	60	88	2	191	42	19	16	21	1.88
33935062--33935141	31	2.6	31	82	4	99	48	10	13	27	1.74
33935235--33935266	3	10.3	3	93	6	55	0	37	0	62	0.95
33937110--33937178	4	17.2	4	81	11	79	68	0	30	1	0.99
33940430--33940476	21	2.2	21	92	0	76	25	17	36	21	1.94
33942462--33942505	15	3.1	15	77	12	56	34	0	6	59	1.24
33943213--33943252	7	5.9	7	94	2	64	0	40	0	60	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182