genome.fa.s9.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  165  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50142767--50142820	12	4.6	12	93	4	92	14	20	0	64	1.28
50143756--50143810	5	9.8	5	83	14	56	74	1	3	20	1.06
50143757--50143810	6	9.3	6	83	4	58	75	1	3	18	1.03
50143756--50143810	17	3.2	16	82	10	65	74	1	3	20	1.06
50143827--50143852	11	2.4	11	100	0	52	23	7	0	69	1.14
50152625--50152806	95	1.9	96	86	6	262	58	4	8	28	1.46
50154833--50155297	208	2.2	209	85	2	603	24	21	17	36	1.94
50155489--50155719	49	4.7	50	70	14	140	16	29	16	37	1.91
50156762--50156807	16	2.8	18	87	12	64	8	15	0	76	1.02
50156763--50156807	23	2.0	23	86	8	65	8	13	0	77	0.98
50156779--50156816	16	2.4	16	91	8	60	7	15	0	76	1.01
50157264--50157305	16	2.6	16	77	7	50	71	0	9	19	1.13
50158099--50158141	19	2.3	19	84	8	52	58	4	0	37	1.19
50164681--50164729	18	2.8	17	82	14	55	44	4	8	42	1.53
50167094--50167118	2	12.5	2	100	0	50	48	0	0	52	1.00
50174842--50174870	2	14.5	2	100	0	58	48	0	0	51	1.00
50182746--50182798	28	1.9	27	85	11	72	60	9	7	22	1.53
50203235--50203295	29	2.2	29	85	5	81	60	1	1	36	1.16
50203242--50203304	27	2.2	28	76	13	67	61	1	4	31	1.26
50204058--50204087	15	2.0	15	93	0	51	30	3	0	66	1.07
50204129--50204186	17	3.4	16	81	9	62	43	1	5	50	1.35
50204128--50204184	23	2.5	24	80	8	64	43	1	5	49	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50205566--50205781	30	7.3	29	78	7	193	37	18	4	38	1.71
50205566--50205758	89	2.2	87	81	6	217	37	19	3	39	1.69
50207122--50207185	29	2.2	29	83	2	76	31	12	26	29	1.93
50207285--50207474	29	6.5	29	79	8	188	34	2	24	38	1.69
50207285--50207474	59	3.2	58	78	10	192	34	2	24	38	1.69
50207370--50207487	29	4.0	29	84	3	128	35	1	21	41	1.63
50208572--50208607	17	2.1	17	90	10	56	52	0	0	47	1.00
50209361--50209410	11	4.3	12	75	7	50	44	6	0	50	1.26
50209359--50209407	23	2.2	23	85	3	64	44	6	0	48	1.27
50215457--50215499	20	2.2	20	95	0	77	60	13	9	16	1.58
50228710--50228812	36	2.9	36	94	0	179	26	11	24	37	1.89
50230943--50233198	614	3.7	613	93	2	3602	39	11	10	39	1.75
50240185--50242105	613	3.1	614	95	1	3354	39	11	9	39	1.74
50273608--50273667	28	2.1	28	93	6	104	25	11	30	33	1.91
50273654--50273820	30	5.6	28	74	13	115	37	2	20	39	1.66
50273712--50273820	30	3.7	29	81	4	119	35	0	21	42	1.59
50273661--50273843	30	6.2	30	71	15	114	36	3	20	39	1.69
50275370--50275485	6	20.0	6	72	13	91	51	4	1	42	1.31
50275358--50275485	17	7.1	17	72	18	89	51	3	1	42	1.29
50275370--50275485	11	10.0	12	72	13	91	51	4	1	42	1.31
50275816--50276437	202	3.1	200	84	2	788	24	21	19	34	1.96
50279889--50279989	30	3.4	28	77	9	94	30	4	24	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50280593--50280736	76	1.9	76	97	0	270	27	15	10	46	1.78
50280601--50280758	76	2.1	76	84	0	199	31	15	10	43	1.79
50283278--50283461	97	1.9	97	88	4	282	39	13	17	28	1.88
50283732--50284005	29	9.3	30	77	10	199	34	2	24	38	1.70
50283831--50283975	59	2.5	59	84	7	179	36	2	20	41	1.64
50283739--50283994	59	4.4	59	74	12	170	35	2	22	39	1.69
50285506--50285591	17	5.1	17	81	1	102	58	3	3	34	1.32
50286131--50286202	37	1.9	37	91	0	117	20	23	20	34	1.96
50285999--50286552	210	2.6	210	89	0	797	20	22	20	37	1.95
50287184--50287229	23	2.0	23	100	0	92	47	17	13	21	1.81
50297061--50297208	75	2.0	75	93	0	251	45	9	15	29	1.78
50297623--50297827	29	7.1	29	76	8	170	34	2	24	38	1.71
50297627--50297790	30	5.6	29	77	11	113	35	3	25	35	1.72
50297632--50297791	87	1.8	87	82	5	207	36	3	24	36	1.71
50299849--50299881	15	2.2	15	89	10	50	81	3	6	9	0.95
50299837--50299893	26	2.2	24	77	14	60	78	5	5	10	1.06
50312479--50312763	49	5.8	50	70	13	187	40	16	25	17	1.90
50312485--50312899	99	4.3	98	78	8	422	39	17	25	17	1.91
50312484--50312899	49	8.6	49	66	10	158	39	17	25	17	1.91
50312484--50312905	189	2.2	196	84	6	531	39	17	25	18	1.91
50316795--50316850	26	2.1	27	86	3	78	17	7	23	51	1.70
50316851--50316956	6	18.3	6	69	11	60	57	3	0	37	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50316851--50316952	17	5.9	17	85	1	132	56	3	0	38	1.24
50316883--50316932	23	2.2	23	82	7	57	58	8	0	34	1.28
50317462--50317486	2	12.5	2	100	0	50	52	0	0	48	1.00
50318101--50318139	20	2.0	20	85	10	53	69	2	2	25	1.14
50318328--50318702	166	2.2	169	90	5	578	29	20	14	35	1.93
50322703--50322801	30	3.3	30	76	5	101	34	19	8	38	1.81
50323219--50323270	24	2.2	24	85	0	68	55	5	3	34	1.42
50326758--50326813	23	2.4	23	93	0	94	28	25	23	23	1.99
50330791--50330816	3	8.7	3	100	0	52	30	34	0	34	1.58
50333524--50333559	3	12.0	3	100	0	72	66	0	0	33	0.92
50334566--50334628	24	2.6	24	87	0	90	50	9	14	25	1.72
50336556--50336618	24	2.6	24	87	0	90	50	9	14	25	1.72
50349215--50349362	58	2.6	58	79	7	140	40	7	22	29	1.81
50349215--50349490	59	4.7	57	80	7	159	38	5	23	32	1.79
50349330--50349589	29	8.8	29	76	7	222	35	3	25	35	1.74
50349328--50349593	59	4.5	59	83	4	331	34	4	25	35	1.75
50349326--50349588	118	2.2	119	88	4	381	35	4	25	35	1.75
50351355--50351395	14	2.9	14	89	7	57	24	7	21	46	1.77
50351419--50351508	11	8.0	11	75	7	83	52	3	0	44	1.17
50351402--50351508	17	6.3	17	81	0	115	51	2	0	45	1.15
50351402--50351508	34	3.1	34	82	0	133	51	2	0	45	1.15
50358959--50359261	30	10.2	30	83	4	355	38	25	3	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50358959--50359261	59	5.1	60	82	5	355	38	25	3	32	1.74
50359188--50359342	82	1.9	82	82	6	199	37	20	3	38	1.71
50360259--50360300	14	2.9	15	75	10	52	59	7	7	26	1.50
50360677--50360722	24	1.9	23	86	8	65	56	6	4	32	1.45
50361799--50361837	7	5.6	7	96	0	60	20	28	0	51	1.48
50383807--50384008	68	3.0	68	84	0	251	39	19	5	36	1.75
50383924--50384157	108	2.2	108	83	3	278	37	18	5	38	1.74
50383954--50384122	49	3.2	49	75	15	167	36	18	4	39	1.72
50384030--50384067	10	3.7	10	89	3	58	39	21	2	36	1.67
50383856--50384117	59	4.5	59	73	17	224	36	19	5	38	1.76
50383924--50384122	108	1.9	106	86	2	281	36	18	5	39	1.74
50384226--50384361	66	2.1	65	85	1	182	44	28	8	17	1.79
50384609--50384791	36	5.1	36	84	4	226	36	20	8	33	1.84
50384609--50384791	70	2.5	70	87	6	242	36	20	8	33	1.84
50395552--50395576	12	2.1	12	100	0	50	76	8	0	16	1.02
50395773--50395841	12	5.8	12	77	13	63	73	18	1	5	1.10
50395702--50395794	32	2.9	31	71	7	78	68	16	2	12	1.30
50395773--50395841	24	2.9	24	81	14	81	73	18	1	5	1.10
50395858--50395902	23	1.9	23	86	4	63	68	17	4	8	1.32
50427965--50428021	3	19.0	3	88	0	87	35	3	0	61	1.13
50428706--50428780	17	4.4	17	81	6	80	49	2	2	45	1.30
50428700--50428807	6	18.3	6	69	14	55	47	3	1	47	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50429771--50429850	31	2.6	30	82	5	90	55	7	13	23	1.64
50430183--50430207	13	1.9	13	100	0	50	36	8	0	56	1.29
50431508--50431679	30	5.8	29	64	19	70	37	4	27	31	1.75
50431482--50431617	59	2.3	59	79	3	139	39	4	26	29	1.75
50431589--50431768	30	6.0	30	82	6	161	35	4	23	36	1.75
50431589--50431768	90	2.0	91	82	7	224	35	4	23	36	1.75
50432500--50432543	19	2.3	19	84	7	54	9	15	2	72	1.19
50433653--50433748	49	2.0	48	83	2	120	26	15	26	32	1.96
50433776--50433831	17	3.3	16	72	18	51	48	5	1	44	1.36
50436703--50436743	21	1.9	21	90	5	64	19	0	7	73	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182