genome.fa.s9.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  116  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37583497--37583551	24	2.2	24	84	9	67	27	16	10	45	1.80
37591062--37591104	15	2.9	15	78	0	50	67	2	30	0	1.03
37593704--37593758	24	2.2	24	84	9	67	25	14	12	47	1.80
37599257--37599287	16	1.9	16	93	0	53	61	0	16	22	1.34
37600245--37600328	37	2.3	37	87	0	114	26	14	29	29	1.95
37601366--37601398	17	1.9	17	93	0	57	48	9	21	21	1.77
37603689--37603719	16	1.9	16	93	0	53	61	0	12	25	1.32
37605727--37605938	69	3.1	69	76	3	160	36	22	15	25	1.93
37607109--37607153	22	2.0	22	91	0	72	20	15	28	35	1.93
37613488--37613632	58	2.5	58	82	4	170	39	21	7	31	1.81
37618998--37619072	28	2.7	28	93	2	134	37	24	17	21	1.94
37624288--37624332	21	2.1	21	83	0	54	31	26	13	28	1.94
37625005--37625306	53	5.7	53	88	1	437	34	22	15	27	1.95
37632232--37632586	53	6.7	53	86	1	507	34	21	15	27	1.94
37633404--37633447	20	2.2	20	83	4	52	34	15	2	47	1.58
37642351--37642380	12	2.5	12	94	0	51	70	0	30	0	0.88
37642779--37642816	17	2.2	17	86	9	51	15	13	15	55	1.70
37645591--37645769	39	4.6	39	78	0	178	24	19	19	36	1.95
37645591--37645769	78	2.3	78	84	1	225	24	19	19	36	1.95
37655101--37655215	61	1.9	59	89	7	178	41	1	3	53	1.28
37656159--37656207	24	2.0	25	84	11	66	42	0	6	51	1.27
37667317--37667372	11	4.9	12	80	10	73	39	1	0	58	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37667308--37667386	17	4.6	17	76	9	72	40	1	1	56	1.15
37667317--37667370	23	2.4	21	79	11	63	38	1	0	59	1.08
37667325--37667369	6	7.7	6	82	5	56	37	2	0	60	1.09
37667320--37667389	34	2.1	34	83	5	88	41	1	0	57	1.08
37669235--37669401	30	5.6	29	72	17	110	37	25	1	34	1.67
37669293--37669606	59	5.3	57	80	7	299	31	27	3	37	1.74
37669264--37669485	30	7.5	28	70	19	141	35	26	1	36	1.67
37678960--37679032	32	2.2	33	80	2	85	26	5	5	63	1.38
37679765--37680064	149	2.0	149	98	0	582	35	16	21	26	1.94
37683516--37684093	281	2.0	284	89	5	871	29	17	19	34	1.94
37685768--37685928	82	2.0	82	93	0	277	38	16	14	30	1.89
37690841--37690894	26	2.1	26	96	0	99	29	0	35	35	1.58
37692087--37692144	23	2.4	24	72	13	57	44	0	6	48	1.29
37699650--37699680	16	1.9	16	93	0	53	41	9	0	48	1.36
37703685--37703736	21	2.5	21	83	0	68	34	15	23	26	1.94
37706073--37706129	24	2.4	24	84	0	78	57	7	0	35	1.26
37706103--37706150	15	3.2	15	81	0	51	50	4	2	43	1.33
37709926--37709959	13	2.6	13	90	0	50	44	17	5	32	1.73
37709892--37709992	44	2.3	44	84	3	132	36	17	8	36	1.82
37710256--37710524	79	3.4	79	84	6	359	39	8	12	39	1.74
37721956--37721992	7	5.1	7	90	3	56	27	0	2	70	1.01
37723390--37723417	8	3.5	8	100	0	56	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37724846--37724924	30	2.7	30	84	2	106	55	5	15	24	1.60
37729935--37729963	14	2.1	14	100	0	58	58	0	13	27	1.36
37730426--37730487	28	2.2	28	82	2	72	41	8	6	43	1.60
37730620--37730657	14	2.6	15	87	8	60	52	0	0	47	1.00
37737820--37737882	24	2.7	22	79	11	72	41	19	14	25	1.89
37738837--37739111	91	3.0	92	82	7	342	26	12	9	51	1.70
37738771--37739078	91	3.3	95	81	9	364	24	12	11	51	1.73
37738771--37739140	188	2.0	189	82	8	450	24	13	10	52	1.71
37739203--37739238	18	2.0	18	94	0	63	44	0	2	52	1.15
37743195--37743237	22	2.0	22	90	0	68	46	13	6	32	1.71
37743542--37743600	30	2.0	30	86	0	82	15	30	27	27	1.96
37745488--37745512	13	1.9	13	100	0	50	64	0	4	32	1.12
37746030--37746055	5	5.2	5	100	0	52	0	38	0	61	0.96
37751893--37752063	85	2.0	85	95	0	306	23	23	14	38	1.92
37760347--37760379	18	1.9	17	88	11	50	24	3	12	60	1.46
37762477--37762538	23	2.7	23	85	5	81	43	20	4	30	1.73
37766150--37766218	33	2.1	33	94	0	120	68	13	7	11	1.40
37777119--37777162	7	5.7	7	80	19	52	2	18	0	79	0.83
37780704--37780808	28	3.7	27	67	18	70	32	4	29	33	1.78
37780795--37781169	30	12.8	29	75	11	284	35	3	24	37	1.72
37780851--37781175	59	5.6	58	84	7	385	33	3	25	37	1.73
37780908--37781175	29	9.1	29	81	10	273	33	2	26	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37783394--37783426	15	2.1	16	88	5	50	3	21	3	72	1.11
37783387--37783427	16	2.5	17	76	15	50	4	21	2	70	1.18
37788376--37788603	118	1.9	118	83	3	298	35	4	24	35	1.77
37788318--37788607	59	4.9	59	82	3	270	36	4	24	35	1.76
37788386--37788605	29	7.5	29	77	10	216	33	4	25	36	1.76
37790284--37790374	17	5.3	17	76	2	92	56	7	1	35	1.35
37790277--37790374	35	2.8	34	75	4	106	54	8	1	36	1.37
37790346--37790389	23	1.9	23	90	0	70	56	2	2	38	1.24
37792395--37792420	13	2.0	13	100	0	52	46	7	7	38	1.61
37793077--37793204	56	2.3	56	88	0	184	19	21	34	25	1.96
37793522--37793599	40	2.0	40	84	0	102	33	15	20	30	1.94
37807585--37807628	18	2.4	18	84	0	61	13	31	9	45	1.75
37808472--37808521	25	2.0	26	88	4	75	64	6	2	28	1.28
37823985--37824033	21	2.3	21	75	0	53	24	6	38	30	1.80
37826430--37826571	41	3.4	40	86	6	176	35	10	23	29	1.89
37826469--37826584	41	2.8	41	88	0	106	38	9	23	28	1.86
37837090--37837123	13	2.5	13	90	4	50	0	17	0	82	0.67
37837782--37837814	12	2.6	13	85	4	50	69	9	3	18	1.28
37849289--37849364	24	3.1	23	77	9	62	34	25	18	22	1.96
37854495--37855169	334	2.0	334	98	0	1314	25	20	18	35	1.95
37855850--37855888	14	2.7	15	88	8	62	33	20	0	46	1.51
37857709--37857745	17	2.1	19	85	10	51	18	16	2	62	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37858059--37858114	17	3.4	17	85	2	78	42	1	0	55	1.10
37858085--37858137	28	1.9	27	80	3	61	39	1	5	52	1.36
37860083--37860336	29	8.8	29	77	9	218	37	23	2	36	1.70
37860083--37860279	57	3.4	58	86	5	265	37	23	2	36	1.69
37860073--37860337	87	3.1	87	76	13	251	37	24	2	35	1.69
37860083--37860336	58	4.4	58	81	9	263	37	23	2	36	1.70
37860083--37860335	116	2.2	114	84	9	309	37	23	2	35	1.70
37865360--37865415	11	4.9	11	79	16	69	80	0	19	0	0.71
37865363--37865411	25	2.0	26	92	8	84	79	0	20	0	0.73
37865360--37865414	18	3.1	17	82	17	76	81	0	18	0	0.68
37866693--37866789	50	2.0	50	89	6	153	41	19	25	13	1.88
37866733--37866884	82	1.9	81	88	1	232	42	18	24	14	1.87
37866823--37866977	51	3.1	51	81	2	181	41	18	25	14	1.88
37867251--37867386	66	2.0	67	85	4	186	24	26	22	26	2.00
37867494--37867784	152	1.9	152	90	0	465	32	20	23	23	1.98
37867606--37868158	201	2.7	200	89	1	800	33	20	23	22	1.97
37867963--37868313	169	2.1	169	90	1	542	34	19	23	22	1.96
37868741--37868847	6	18.8	6	67	14	66	42	2	3	51	1.34
37868741--37868824	11	7.5	11	75	10	71	44	2	1	52	1.21
37868742--37868792	16	3.1	16	83	5	75	43	1	0	54	1.11
37868741--37868864	17	7.3	17	74	9	92	41	2	4	51	1.33
37868771--37868819	24	2.0	24	92	0	80	46	2	2	48	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37871077--37871113	17	2.1	19	85	10	51	18	16	2	62	1.45
37871427--37871479	17	3.1	17	91	0	88	45	1	0	52	1.11
37873512--37873663	29	5.2	29	80	12	161	36	27	1	34	1.68
37873516--37873661	59	2.5	59	86	7	190	37	26	2	34	1.68
37881617--37881641	3	8.3	3	100	0	50	68	0	32	0	0.90
37884326--37884373	20	2.3	21	82	13	64	39	0	14	45	1.45
37902045--37902081	9	4.2	9	89	3	58	59	2	0	37	1.12
37902770--37902800	16	1.9	16	93	0	53	61	0	16	22	1.34
37912341--37912372	15	2.0	17	88	11	50	65	0	34	0	0.93
37915549--37915601	26	2.0	26	88	0	79	30	22	20	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182