genome.fa.s9.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  153  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47308722--47308810	29	3.0	29	69	16	67	32	26	3	37	1.73
47314636--47314701	33	2.0	33	100	0	132	33	21	21	24	1.97
47319542--47319593	26	2.0	27	88	3	79	73	1	21	3	1.10
47327360--47327403	23	2.0	22	86	4	61	38	6	18	36	1.77
47330387--47331193	200	4.0	199	88	1	1148	36	20	23	20	1.96
47331041--47331339	157	1.9	157	89	0	463	36	19	24	20	1.95
47331810--47331844	18	1.9	18	94	0	61	57	14	8	20	1.63
47332560--47332602	22	2.0	22	90	4	70	37	0	6	55	1.27
47333485--47333817	59	5.6	59	82	1	371	33	27	3	36	1.72
47333483--47333697	30	7.3	30	66	22	87	33	26	2	36	1.71
47333496--47333817	177	1.8	177	82	2	414	34	27	2	36	1.71
47344235--47344281	24	2.0	24	95	4	87	23	17	4	55	1.59
47348605--47348693	17	5.1	17	75	8	54	47	2	3	47	1.31
47348605--47348679	17	4.4	17	78	8	71	42	2	4	50	1.35
47349460--47349510	3	16.7	3	83	4	66	62	3	0	33	1.13
47350526--47350801	29	9.6	28	67	21	135	31	31	2	33	1.73
47350528--47350836	57	5.4	57	87	4	417	31	31	3	33	1.74
47350528--47350820	115	2.6	114	88	3	428	31	32	3	32	1.75
47360657--47360697	19	2.2	19	91	8	66	70	0	2	26	0.99
47363057--47363099	20	2.1	20	82	4	50	48	4	6	39	1.51
47365838--47365870	12	2.5	14	85	14	52	42	6	0	51	1.26
47371308--47371342	6	5.8	6	100	0	70	51	0	34	14	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47377603--47377671	35	2.0	35	97	0	129	39	20	10	30	1.85
47378366--47378531	85	1.9	86	92	1	280	25	14	16	43	1.86
47388756--47388848	17	5.4	17	85	6	134	43	0	2	54	1.12
47388784--47388848	6	11.2	6	77	12	73	46	0	0	53	1.00
47389844--47389884	3	13.7	3	100	0	82	68	0	0	31	0.90
47391016--47391162	30	5.0	30	76	12	110	38	24	1	36	1.64
47391026--47391219	29	6.6	28	70	14	99	37	23	2	36	1.69
47391026--47391219	58	3.3	56	78	15	150	37	23	2	36	1.69
47391173--47391311	29	4.8	29	71	15	99	34	23	6	35	1.81
47391119--47391337	59	3.8	57	81	7	217	35	24	5	34	1.80
47391119--47391337	29	7.4	29	70	19	89	35	24	5	34	1.80
47391259--47391345	30	3.0	29	76	15	81	34	32	4	28	1.78
47400189--47401427	209	6.0	208	86	4	1558	36	18	22	22	1.95
47400189--47401427	419	3.0	412	87	4	1647	36	18	22	22	1.95
47400971--47401359	197	2.0	198	89	3	604	35	18	22	22	1.95
47402506--47402545	3	13.0	3	89	5	62	65	0	2	32	1.06
47403664--47403832	29	5.9	28	82	11	191	38	26	1	34	1.64
47403655--47403852	58	3.4	59	83	8	214	39	25	1	34	1.63
47403655--47403852	87	2.3	87	84	10	246	39	25	1	34	1.63
47405115--47405181	16	4.3	16	74	14	68	43	1	2	52	1.25
47407105--47407386	29	9.4	30	81	7	279	38	25	1	34	1.65
47407372--47407531	28	5.5	28	68	16	94	30	24	6	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47407339--47407531	59	3.3	60	74	13	186	31	24	5	38	1.77
47407339--47407531	58	3.3	58	74	11	178	31	24	5	38	1.77
47407372--47407680	145	2.1	145	82	5	385	30	24	7	37	1.83
47407372--47407715	145	2.4	146	79	5	333	29	25	8	36	1.86
47412908--47413080	62	2.7	59	77	12	157	40	2	5	51	1.39
47413930--47413988	17	3.5	17	81	4	66	69	3	1	25	1.13
47413930--47413962	8	4.1	8	100	0	66	75	0	0	24	0.80
47413933--47413988	25	2.1	27	83	6	71	71	3	1	23	1.11
47417987--47418135	66	2.3	66	95	0	271	14	24	19	42	1.88
47421116--47421158	22	2.0	22	90	0	68	41	13	11	32	1.81
47421455--47421665	42	5.0	43	82	4	250	30	26	16	27	1.97
47421455--47421665	43	5.0	42	83	5	246	30	26	16	27	1.97
47424806--47424937	41	3.2	41	80	6	117	21	25	18	34	1.96
47424846--47424935	41	2.2	40	88	2	135	21	26	20	32	1.97
47425939--47425979	21	1.9	22	85	5	57	51	0	4	43	1.23
47428208--47428248	21	2.0	21	85	0	55	48	0	4	46	1.23
47429643--47429843	42	4.8	41	85	3	249	29	26	17	26	1.98
47429641--47429843	84	2.4	85	90	2	302	29	26	18	26	1.98
47437989--47438128	30	4.9	30	73	15	127	40	4	21	33	1.73
47437967--47438127	53	2.8	57	78	11	177	40	4	22	32	1.74
47437985--47438220	30	8.2	28	68	17	121	44	4	18	33	1.70
47437964--47438220	59	4.5	58	77	10	224	43	4	18	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47438052--47438223	58	2.9	58	78	10	188	47	3	15	33	1.62
47438427--47438540	17	6.6	17	81	3	120	40	1	1	56	1.20
47438428--47438540	35	3.3	34	73	12	104	40	1	1	55	1.20
47440107--47440419	29	10.8	27	74	14	175	34	27	3	35	1.73
47440112--47440407	58	5.1	58	82	8	266	34	27	2	35	1.71
47440108--47440402	116	2.5	116	81	10	307	33	26	3	36	1.72
47440179--47440464	87	3.3	86	78	12	237	31	27	5	36	1.79
47440088--47440465	145	2.6	144	80	9	364	33	26	4	35	1.77
47447921--47447993	30	2.6	27	70	14	67	41	0	2	56	1.14
47450829--47450871	18	2.5	17	78	10	52	25	18	48	6	1.73
47451679--47452033	49	7.3	49	73	6	310	20	25	17	36	1.94
47451647--47452033	97	4.0	98	87	3	523	20	25	17	37	1.94
47458645--47458743	6	17.0	6	69	14	55	45	3	1	50	1.23
47458645--47458737	17	5.4	17	82	7	107	44	3	1	51	1.24
47458645--47458740	35	2.7	35	85	3	113	43	3	1	52	1.24
47458645--47458742	18	5.6	17	78	9	90	44	3	1	51	1.24
47460635--47461147	59	8.7	59	83	4	592	34	28	2	34	1.70
47460749--47461121	29	12.6	30	65	22	107	34	27	2	35	1.71
47460634--47461147	117	4.4	118	84	3	610	34	28	2	34	1.70
47460634--47461147	236	2.2	235	84	5	657	34	28	2	34	1.70
47474368--47474411	18	2.4	19	84	3	54	47	0	0	52	1.00
47474372--47474425	23	2.3	24	82	17	62	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47474385--47474442	19	3.1	19	73	16	57	46	0	0	53	1.00
47485698--47486125	212	2.0	214	98	0	824	32	12	17	38	1.87
47487793--47487848	24	2.4	24	90	3	87	35	32	3	28	1.74
47487910--47488032	7	17.6	7	82	6	99	20	17	22	39	1.92
47487917--47488046	21	6.2	21	79	12	115	21	16	21	40	1.92
47487910--47488048	28	5.0	28	80	8	140	20	18	21	38	1.93
47487966--47488051	7	12.3	7	86	4	84	23	18	18	39	1.92
47487907--47488068	28	5.8	28	78	9	134	21	19	20	38	1.94
47490611--47490839	100	2.3	99	96	0	422	25	6	20	46	1.76
47491244--47491277	16	2.3	14	90	10	50	76	0	5	17	0.98
47491243--47491281	15	2.5	17	84	16	57	74	0	5	20	1.01
47493003--47493027	13	1.9	13	100	0	50	24	40	28	8	1.83
47493056--47493086	12	2.6	12	100	0	62	29	19	38	12	1.89
47503839--47503882	2	22.0	2	95	0	79	52	0	0	47	1.00
47504096--47504122	11	2.5	11	100	0	54	29	0	7	62	1.22
47511303--47511354	20	2.6	20	100	0	104	38	9	5	46	1.61
47511940--47511995	28	2.0	28	100	0	112	42	25	7	25	1.80
47513890--47513921	12	2.7	12	95	0	55	34	25	31	9	1.87
47514522--47514750	30	7.8	30	78	8	204	34	23	2	40	1.68
47514518--47514683	58	2.8	60	83	11	184	34	23	1	39	1.65
47514521--47514720	88	2.3	89	83	7	232	35	24	1	39	1.65
47520962--47521717	49	15.5	49	70	11	460	37	17	25	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47520971--47521742	98	7.9	98	84	3	964	37	18	24	19	1.94
47522081--47522155	39	1.9	38	83	5	96	34	26	13	25	1.93
47522709--47522755	24	1.9	25	86	4	69	46	34	2	17	1.59
47524124--47524388	30	8.9	30	87	2	329	37	24	1	36	1.65
47524124--47524413	89	3.3	90	85	3	354	36	23	1	38	1.65
47524124--47524413	59	4.9	60	81	5	295	36	23	1	38	1.65
47527660--47527748	47	1.9	46	84	6	117	26	11	20	41	1.86
47534823--47534882	6	10.5	6	71	10	54	43	3	3	50	1.35
47534823--47534891	17	4.1	17	76	14	79	44	2	4	47	1.37
47536741--47536814	29	2.5	30	73	10	71	47	14	2	35	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182