genome.fa.s9.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  131  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41279966--41280422	60	7.7	60	79	7	346	34	21	2	41	1.67
41279984--41280422	30	14.9	28	77	7	263	35	21	2	41	1.66
41280026--41280414	118	3.3	115	83	6	449	36	21	1	40	1.64
41292657--41292941	125	2.3	125	84	6	355	40	19	19	21	1.92
41294944--41295015	30	2.4	29	86	9	92	33	23	6	36	1.82
41294980--41295319	60	5.8	58	78	7	301	35	27	3	33	1.73
41294976--41295331	30	12.0	30	76	7	264	34	27	3	34	1.75
41300527--41300592	3	22.0	3	100	0	132	33	0	0	66	0.92
41301295--41301330	17	2.1	18	94	5	65	44	0	0	55	0.99
41303521--41303549	14	2.1	14	100	0	58	93	0	0	6	0.36
41303525--41303549	13	1.9	13	100	0	50	96	0	0	4	0.24
41304365--41304693	30	10.9	30	85	2	376	35	24	2	38	1.69
41304361--41304680	90	3.6	90	86	5	423	35	24	2	38	1.68
41310716--41311092	49	7.7	49	75	3	326	36	15	27	20	1.93
41310729--41311092	99	3.7	99	90	0	550	36	15	27	19	1.93
41310729--41311091	148	2.5	149	77	6	407	36	15	27	19	1.92
41311165--41311268	49	2.1	49	85	0	136	37	20	25	16	1.93
41311340--41311658	102	3.1	102	86	3	439	36	15	17	30	1.91
41313332--41313628	30	10.0	30	83	7	216	36	21	2	40	1.66
41313351--41313627	88	3.1	89	83	4	339	35	22	2	39	1.68
41313333--41313652	60	5.4	60	82	6	348	35	21	2	40	1.68
41313330--41313652	118	2.7	119	81	6	370	34	21	2	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41315258--41315383	62	2.0	62	98	0	243	42	14	4	38	1.67
41316248--41316301	22	2.5	22	77	17	58	48	5	0	46	1.25
41318341--41318372	16	2.0	16	93	0	55	68	3	0	28	1.04
41318343--41318382	17	2.4	16	84	12	53	77	2	0	20	0.88
41318342--41318381	16	2.4	16	87	4	53	75	2	0	22	0.93
41319729--41319760	15	2.1	16	88	11	50	37	0	9	53	1.34
41339659--41339757	39	2.5	39	83	4	119	22	13	23	41	1.88
41340864--41340913	13	3.6	13	83	8	55	76	6	2	16	1.08
41340865--41340907	17	2.6	17	82	7	54	74	6	2	16	1.14
41341003--41341055	20	2.6	20	77	14	63	69	5	0	24	1.09
41341292--41341344	24	2.3	23	84	15	74	54	22	0	22	1.45
41342041--41342067	14	1.9	14	100	0	54	44	7	33	14	1.73
41343672--41343722	21	2.4	21	87	9	68	19	11	5	62	1.49
41344548--41344643	32	3.0	32	95	0	165	25	13	22	38	1.91
41348760--41348957	78	2.5	79	82	9	239	44	26	3	25	1.70
41349726--41349813	18	5.1	18	71	8	67	38	9	2	50	1.47
41350123--41350157	16	2.2	16	89	0	52	57	2	2	37	1.29
41352737--41352775	20	2.0	20	89	0	60	38	0	0	61	0.96
41355090--41355125	12	3.1	12	96	4	65	19	0	16	63	1.30
41355216--41355268	22	2.4	22	84	6	63	30	1	11	56	1.45
41358407--41358453	18	2.7	18	75	24	55	40	0	4	55	1.19
41360293--41360618	29	11.2	29	78	5	311	36	24	2	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41360605--41360707	29	3.5	29	71	9	75	32	17	7	42	1.78
41362687--41362919	51	4.6	51	80	5	249	28	22	15	33	1.95
41369939--41370117	51	3.5	51	78	4	157	30	20	14	34	1.92
41369990--41370123	51	2.6	51	83	0	160	29	19	14	36	1.91
41377635--41377742	39	2.8	39	84	2	128	35	19	18	26	1.95
41383971--41384007	18	2.1	18	89	0	56	43	8	18	29	1.79
41384024--41384209	39	4.8	39	82	1	212	37	19	17	25	1.93
41390891--41390977	39	2.2	39	89	0	129	36	18	17	27	1.93
41395146--41395458	94	3.4	94	84	1	362	30	21	18	29	1.97
41399262--41399326	29	2.2	30	86	2	87	40	0	9	50	1.34
41400426--41400460	12	2.9	12	91	0	61	17	22	0	60	1.37
41401471--41401870	43	9.2	43	80	7	448	28	28	18	25	1.98
41401741--41401842	50	2.0	51	84	1	134	27	26	18	27	1.98
41409573--41409894	168	1.9	168	92	0	545	30	22	16	30	1.96
41410537--41410787	41	6.1	40	85	4	295	22	25	27	25	2.00
41410537--41410782	124	2.0	124	85	1	332	21	26	27	24	2.00
41410537--41410787	83	3.0	81	86	4	324	22	25	27	25	2.00
41410719--41410813	41	2.3	41	83	3	111	26	26	23	24	2.00
41410799--41410895	41	2.3	42	82	8	126	28	24	22	23	1.99
41413021--41413047	2	13.5	2	100	0	54	51	0	0	48	1.00
41419622--41419657	18	2.1	17	89	5	54	47	0	19	33	1.50
41422634--41422805	23	7.4	23	77	10	145	43	20	23	11	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41422638--41422769	69	1.9	66	86	11	185	43	21	21	12	1.86
41429886--41429987	23	4.4	23	76	11	102	44	21	22	11	1.85
41429839--41429986	69	2.1	69	86	7	203	43	19	22	13	1.86
41438262--41438312	16	2.9	17	85	14	68	74	1	23	0	0.92
41438902--41439057	78	2.0	78	96	0	285	47	14	13	25	1.80
41449682--41449790	30	3.7	29	78	9	114	34	8	26	30	1.86
41449712--41449961	60	4.2	58	76	11	222	36	3	28	32	1.73
41449688--41449983	29	9.9	31	68	17	119	35	4	27	33	1.76
41451088--41451171	9	9.4	9	71	12	66	41	5	1	51	1.34
41451087--41451120	16	2.1	17	94	5	61	44	0	0	55	0.99
41451090--41451171	18	4.6	18	77	8	80	41	6	1	51	1.34
41451913--41451974	6	10.5	6	72	10	56	56	0	4	38	1.21
41451895--41451974	35	2.3	35	86	4	108	55	2	6	36	1.39
41452418--41452756	164	2.1	164	92	2	556	23	23	18	34	1.96
41452570--41453114	194	2.7	194	82	5	626	23	22	18	35	1.95
41465079--41465400	60	5.4	59	83	9	345	38	2	25	33	1.69
41465080--41465400	118	2.7	119	83	7	388	38	2	24	33	1.69
41465204--41465423	29	7.5	28	66	15	88	37	2	25	34	1.69
41465055--41465431	58	6.4	59	82	7	214	38	2	24	34	1.70
41466533--41466626	9	10.2	9	70	17	68	40	4	2	53	1.32
41466558--41466608	15	3.4	15	83	0	57	35	5	3	54	1.43
41466577--41466617	21	2.0	21	85	0	55	43	4	2	48	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41467330--41467390	18	3.5	17	82	8	70	55	4	1	37	1.31
41467335--41467394	6	10.3	6	73	7	52	56	3	1	38	1.26
41467349--41467394	18	2.6	18	92	0	74	58	2	2	36	1.22
41467387--41467420	10	3.2	10	88	12	50	52	17	0	29	1.45
41470994--41471145	82	1.9	82	88	0	232	27	17	24	30	1.97
41473417--41473456	19	2.0	19	85	9	53	35	7	5	52	1.51
41478217--41478247	16	1.9	16	100	0	62	64	6	3	25	1.33
41479678--41479968	29	9.7	30	81	7	306	37	25	2	34	1.68
41479655--41479997	59	5.8	59	84	4	354	37	26	2	34	1.69
41485591--41485640	6	7.3	7	78	17	52	80	2	16	2	0.91
41485594--41485635	22	2.0	21	90	4	66	78	2	16	2	0.96
41486592--41486958	50	7.3	50	66	10	154	39	22	25	12	1.89
41486571--41487097	101	5.3	101	85	2	591	40	22	24	12	1.88
41486990--41487231	97	2.5	97	82	6	283	40	22	24	12	1.89
41486934--41487231	145	2.0	148	84	3	388	40	22	24	12	1.88
41486844--41487262	49	8.5	49	73	8	269	40	21	25	13	1.90
41487507--41487713	39	5.3	39	68	9	143	25	29	17	27	1.97
41487503--41487712	78	2.7	78	84	1	278	24	29	17	28	1.97
41487752--41488794	204	5.1	204	85	5	1255	34	19	23	22	1.97
41489170--41489236	34	2.0	34	87	0	98	31	4	8	55	1.51
41489252--41489291	13	3.2	12	92	3	53	52	15	10	22	1.71
41489260--41489291	13	2.5	13	100	0	64	50	18	9	21	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41489320--41489351	16	2.0	16	93	0	55	37	28	6	28	1.81
41490943--41491263	29	10.9	29	77	8	256	37	26	2	33	1.70
41490974--41491259	59	4.9	57	79	8	245	37	26	2	33	1.70
41490943--41491259	88	3.6	85	81	6	355	37	26	2	33	1.70
41490943--41491289	176	2.0	176	85	5	470	37	26	2	33	1.71
41492637--41492691	26	2.1	26	82	0	65	29	3	10	56	1.51
41492703--41492738	15	2.4	15	85	0	54	36	0	0	63	0.94
41494671--41494700	10	3.0	10	90	0	51	50	20	3	26	1.64
41496182--41496215	15	2.1	17	89	10	54	35	0	0	64	0.94
41496456--41496514	2	29.5	2	100	0	118	50	0	0	49	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182