genome.fa.s9.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  147  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45319187--45319527	59	5.8	59	85	4	431	35	2	28	33	1.70
45319535--45319604	28	2.4	27	81	11	77	35	5	18	40	1.75
45321555--45321636	6	14.7	6	79	14	95	54	2	0	42	1.13
45321555--45321636	11	7.4	11	84	13	89	54	2	0	42	1.13
45321555--45321655	17	5.9	17	85	9	111	53	3	0	41	1.26
45321554--45321621	27	2.5	27	92	2	109	54	2	0	42	1.15
45329824--45329849	13	2.0	13	100	0	52	38	0	7	53	1.30
45331653--45331696	3	15.0	3	90	4	72	63	2	0	34	1.07
45348135--45348171	18	2.0	20	89	10	60	40	0	0	59	0.97
45348831--45348904	19	4.2	17	69	20	53	58	1	0	40	1.07
45349429--45349474	16	2.9	16	96	0	83	34	10	0	54	1.36
45367635--45367668	16	2.1	16	88	0	50	32	0	0	67	0.91
45371437--45371474	15	2.4	16	95	4	69	65	10	5	18	1.41
45372477--45372501	3	8.3	3	100	0	50	32	0	0	68	0.90
45376140--45376177	18	2.2	18	90	4	60	0	7	18	73	1.06
45379055--45379148	28	3.2	28	75	18	102	30	4	34	30	1.77
45379249--45379791	76	7.1	76	90	3	838	32	18	15	34	1.92
45379294--45379788	38	12.9	38	67	18	251	32	17	15	33	1.92
45379246--45379791	233	2.4	229	90	4	882	32	17	15	34	1.92
45391880--45392187	59	5.2	59	86	4	406	35	2	27	33	1.71
45391875--45392157	30	9.7	29	70	20	171	34	2	29	33	1.72
45392111--45392207	30	3.3	29	72	15	81	40	3	22	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45393000--45393031	16	2.0	16	93	0	55	40	18	21	18	1.91
45393313--45393362	22	2.4	21	90	9	77	52	6	0	42	1.26
45393604--45393663	30	2.0	30	86	0	84	25	5	21	48	1.70
45394094--45394182	6	15.0	6	76	18	89	51	0	3	44	1.18
45394115--45394165	11	4.8	11	76	9	52	52	0	5	41	1.25
45394106--45394182	37	2.0	38	82	9	95	53	0	3	42	1.19
45394094--45394182	17	5.4	16	81	14	101	51	0	3	44	1.18
45399120--45399150	14	2.2	14	94	0	53	22	0	0	77	0.77
45407064--45407091	3	9.3	3	100	0	56	67	0	0	32	0.91
45412345--45412405	18	3.5	18	75	2	54	57	0	3	39	1.15
45412346--45412408	25	2.5	24	77	10	63	58	0	3	38	1.14
45414507--45414544	15	2.7	15	88	8	53	36	0	0	63	0.95
45424344--45424374	16	2.0	15	93	6	53	77	0	12	9	0.99
45424698--45424741	20	2.2	20	87	0	61	45	2	4	47	1.35
45431176--45431221	21	2.2	20	88	3	65	21	6	2	69	1.22
45431178--45431225	16	2.9	17	84	6	62	22	6	2	68	1.23
45439182--45439272	41	2.3	40	82	3	103	31	18	31	17	1.94
45439254--45439334	43	1.9	43	87	2	119	27	18	32	22	1.97
45454730--45454927	41	4.8	41	91	2	326	34	20	27	17	1.95
45457067--45457166	42	2.3	42	79	10	112	44	9	1	46	1.42
45457141--45457166	8	3.2	8	100	0	52	38	0	0	61	0.96
45457265--45457295	14	2.3	14	94	5	55	48	6	0	45	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45457290--45457316	12	2.2	12	100	0	54	40	0	0	59	0.98
45457299--45457386	34	2.6	33	85	5	122	46	10	1	42	1.45
45457413--45457467	13	4.0	13	78	19	58	45	3	0	50	1.19
45457290--45457750	76	5.8	84	67	18	270	48	9	0	41	1.41
45457286--45457805	152	3.3	155	94	4	870	48	9	0	42	1.40
45457451--45457536	34	2.5	34	84	3	111	48	10	1	39	1.45
45457583--45457624	20	2.2	18	91	8	66	40	0	0	59	0.97
45457673--45457707	4	9.0	4	93	6	63	48	0	0	51	1.00
45457727--45457790	18	3.2	20	82	13	87	40	3	0	56	1.15
45463826--45464029	86	2.4	85	82	8	225	24	19	25	30	1.98
45463826--45464007	43	4.2	42	80	10	181	24	19	26	28	1.99
45465474--45465516	3	14.3	3	100	0	86	0	32	0	67	0.91
45469351--45469402	20	2.6	20	84	0	68	13	19	30	36	1.90
45473648--45473853	30	6.8	30	82	6	229	36	22	1	38	1.64
45476110--45476139	5	6.0	5	92	0	51	83	0	16	0	0.65
45477289--45477626	50	6.9	49	84	3	371	38	26	25	9	1.87
45477751--45478303	92	5.9	92	92	2	856	33	17	17	31	1.93
45478042--45478197	52	3.2	52	67	27	160	32	19	16	31	1.94
45478123--45478297	51	3.4	52	67	12	137	36	17	15	30	1.91
45478130--45478319	103	1.9	103	88	3	285	36	16	16	30	1.91
45478386--45478472	38	2.3	39	83	4	122	19	31	21	27	1.98
45479149--45479243	17	5.5	17	77	3	93	35	3	7	53	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45479149--45479237	34	2.6	34	80	3	108	34	3	6	55	1.43
45479211--45479252	17	2.4	17	88	4	57	47	0	2	50	1.14
45480774--45480995	30	7.4	30	78	8	227	35	22	1	40	1.65
45480774--45481017	60	4.0	61	81	7	250	34	23	2	40	1.66
45480774--45481034	90	2.9	89	81	8	280	34	22	1	41	1.65
45485229--45485279	24	2.1	24	88	0	75	25	7	5	60	1.47
45485243--45485291	24	2.0	24	88	0	71	26	12	8	53	1.66
45487218--45487280	24	2.6	24	87	0	81	25	11	9	53	1.66
45489819--45490094	30	9.2	30	80	9	278	36	2	23	36	1.70
45489773--45490089	60	5.3	58	80	10	309	37	2	24	35	1.69
45491268--45491309	19	2.2	19	91	0	66	64	4	4	26	1.33
45491267--45491318	22	2.4	21	78	9	59	61	3	5	28	1.37
45492270--45493038	68	10.9	75	85	8	307	28	20	17	33	1.96
45492325--45492434	38	2.9	38	70	11	109	30	17	17	35	1.93
45492415--45493018	68	8.9	68	90	4	930	27	21	17	33	1.96
45492340--45493018	136	4.9	135	89	5	929	28	20	17	33	1.95
45492340--45493018	204	3.3	205	90	4	1005	28	20	17	33	1.95
45504791--45505056	29	9.0	30	86	5	364	34	4	25	35	1.75
45506124--45506171	21	2.4	20	80	10	53	39	4	0	56	1.19
45506260--45506306	19	2.6	18	83	6	58	61	4	6	27	1.39
45514741--45514768	13	2.2	13	100	0	56	28	7	14	50	1.69
45520975--45521296	41	7.9	41	87	5	363	25	27	25	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45521366--45521398	13	2.5	13	95	0	57	9	54	3	33	1.47
45523785--45524593	112	7.3	112	90	4	1207	45	2	4	46	1.38
45523785--45524593	325	2.4	330	88	5	1220	45	2	4	46	1.38
45524601--45524632	12	2.4	14	90	10	50	46	0	0	53	1.00
45524365--45524508	12	11.6	12	64	27	52	46	2	2	48	1.28
45524640--45524699	4	15.0	4	73	13	52	41	0	0	58	0.98
45524640--45524699	28	2.1	28	88	11	88	41	0	0	58	0.98
45523785--45524662	223	4.0	221	86	5	1224	45	2	4	47	1.37
45524640--45524697	8	6.8	8	84	11	71	41	0	0	58	0.98
45524719--45524785	33	2.1	33	97	2	127	43	5	8	41	1.60
45530228--45530368	66	2.1	66	92	0	228	45	17	21	15	1.85
45530245--45530385	66	2.1	66	82	1	174	45	17	22	14	1.84
45530613--45530641	15	1.9	15	100	0	58	13	3	34	48	1.60
45530714--45530955	43	5.6	42	89	4	333	25	22	30	21	1.99
45530711--45530955	129	1.9	129	89	5	379	25	22	30	21	1.99
45533573--45533603	14	2.2	14	94	0	53	51	0	0	48	1.00
45537876--45537922	19	2.4	20	85	3	60	31	19	29	19	1.96
45542858--45542991	66	2.0	65	98	1	259	22	26	17	32	1.96
45545148--45545184	19	2.0	18	89	5	56	40	2	0	56	1.13
45546260--45546426	82	2.0	82	86	2	228	42	10	14	32	1.80
45548175--45548321	30	5.0	29	81	5	161	32	6	26	34	1.81
45548117--45548288	59	2.9	59	82	6	190	34	6	27	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45548149--45548322	59	2.9	59	83	7	201	32	7	25	33	1.84
45548176--45548322	29	5.0	28	81	9	143	33	6	25	34	1.81
45548717--45548805	6	15.5	6	71	17	57	53	2	1	42	1.20
45548717--45548805	17	5.5	17	78	16	91	53	2	1	42	1.20
45548717--45548804	16	6.0	14	76	18	74	54	2	1	42	1.20
45549096--45549940	206	4.2	203	88	3	1107	21	22	20	34	1.96
45549109--45549940	201	4.1	201	89	1	1155	22	22	20	34	1.97
45549716--45549872	85	1.8	86	82	4	201	22	24	17	35	1.95
45549109--45549940	401	2.1	404	87	2	1188	22	22	20	34	1.97
45550577--45550637	32	1.9	31	86	3	86	11	19	26	42	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182