genome.fa.s9.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  96  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31375487--31375779	52	5.7	52	82	6	326	26	14	25	33	1.94
31375487--31375779	105	2.8	105	83	7	348	26	14	25	33	1.94
31380845--31380872	3	9.3	3	100	0	56	32	0	0	67	0.91
31382996--31383050	27	2.0	28	96	3	103	10	3	21	63	1.42
31387222--31387311	40	2.2	40	88	0	135	25	6	26	41	1.80
31387883--31388151	110	2.5	109	81	1	306	21	20	21	35	1.96
31388996--31389094	9	11.2	9	72	16	73	73	18	3	5	1.14
31388997--31389056	3	19.7	3	73	10	50	71	23	1	3	1.10
31388997--31389094	12	8.6	12	73	17	59	73	18	3	5	1.15
31389000--31389089	43	2.1	42	85	6	119	73	18	2	5	1.14
31389098--31389140	22	2.0	22	81	9	52	69	20	4	4	1.25
31393189--31393245	9	6.2	9	74	25	57	52	0	0	47	1.00
31393154--31393250	37	2.6	38	90	4	144	48	0	1	50	1.07
31393187--31393247	20	3.2	20	66	29	60	52	0	0	47	1.00
31393207--31393259	14	3.4	15	75	15	54	50	0	0	49	1.00
31393189--31393257	30	2.3	28	85	9	84	53	0	0	46	1.00
31393630--31393667	18	2.1	18	90	0	58	52	13	7	26	1.67
31394524--31394573	23	2.2	23	88	0	73	46	36	2	16	1.58
31394974--31395013	18	2.3	17	86	4	53	30	2	0	67	1.04
31404502--31404545	18	2.5	18	88	3	63	59	13	11	15	1.62
31404949--31404985	15	2.4	16	82	13	51	5	37	0	56	1.22
31404942--31404984	12	3.3	12	79	17	50	2	39	0	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31419281--31419327	19	2.5	18	77	19	51	0	17	2	80	0.80
31419900--31419936	17	2.2	17	90	0	56	59	8	10	21	1.56
31420048--31420090	19	2.3	19	84	8	52	2	23	6	67	1.27
31451362--31451475	40	2.8	40	89	0	138	24	14	28	32	1.95
31452704--31452786	20	4.2	20	74	10	62	46	13	6	33	1.67
31467788--31467813	3	8.7	3	100	0	52	69	0	0	30	0.89
31467969--31468022	23	2.5	22	82	8	58	53	3	1	40	1.29
31476924--31476995	20	3.5	21	73	16	71	8	6	18	66	1.40
31476951--31477054	51	2.0	51	82	12	124	10	7	18	63	1.49
31479621--31479656	7	5.1	7	86	0	54	0	36	13	50	1.43
31497540--31497573	13	2.8	12	82	8	50	29	0	0	70	0.87
31497850--31497911	23	2.7	24	82	5	74	22	4	8	64	1.40
31499440--31499484	10	4.8	10	83	10	51	73	0	20	6	1.05
31499434--31499505	26	2.7	27	82	8	76	76	0	19	4	0.95
31499423--31499500	9	8.6	9	75	13	61	79	0	15	5	0.90
31500540--31500701	50	3.2	49	69	18	134	35	16	20	27	1.94
31500520--31500802	101	2.8	97	84	5	334	35	16	19	28	1.93
31500522--31500678	51	3.1	49	70	14	122	36	17	18	28	1.93
31500558--31500802	50	4.9	50	69	13	162	35	16	20	27	1.94
31501741--31502031	42	6.9	42	86	0	393	26	26	12	34	1.92
31503100--31503372	42	6.5	42	88	4	356	26	26	9	36	1.88
31507774--31507807	13	2.7	12	90	9	50	20	0	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31513498--31513585	42	2.1	42	84	0	113	18	20	31	29	1.96
31519130--31519316	41	4.5	41	83	4	205	26	25	10	37	1.88
31523057--31523096	21	1.9	21	94	0	71	37	7	2	52	1.43
31524533--31524566	16	2.2	16	94	5	61	26	8	11	52	1.67
31540186--31540416	123	1.9	124	87	3	340	40	7	11	40	1.70
31544941--31544987	24	2.0	24	83	8	60	23	19	12	44	1.85
31552854--31552900	24	2.0	24	83	8	60	23	19	12	44	1.85
31562054--31562095	21	2.0	22	85	4	59	64	4	21	9	1.42
31564586--31564914	108	3.1	106	89	1	478	42	5	9	43	1.58
31564705--31564731	13	2.1	13	100	0	54	44	0	0	55	0.99
31564601--31564914	106	2.9	105	87	4	416	42	5	9	43	1.58
31564844--31565198	123	2.9	122	88	2	530	41	6	10	40	1.65
31578082--31578111	3	10.0	3	100	0	60	66	0	33	0	0.92
31578220--31578259	18	2.3	18	86	4	55	17	15	12	55	1.70
31578985--31579018	16	2.1	16	88	0	50	29	14	20	35	1.93
31581525--31581684	81	2.0	81	94	0	284	38	16	3	41	1.67
31582759--31582796	19	2.1	19	85	5	51	5	2	7	84	0.86
31596176--31596334	76	2.1	76	98	0	309	33	18	10	37	1.85
31597529--31597854	165	2.0	165	95	0	589	41	9	13	35	1.76
31600184--31600324	23	6.1	23	85	6	178	10	28	22	38	1.88
31600285--31600363	39	2.0	39	85	0	104	15	20	20	44	1.87
31600324--31600370	23	2.0	23	87	0	67	12	19	19	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31615117--31615307	97	2.0	96	90	3	303	37	4	4	53	1.41
31616209--31616255	22	2.1	22	84	0	58	34	2	19	44	1.62
31616385--31616435	23	2.2	23	89	0	84	29	7	25	37	1.84
31625523--31625587	33	2.0	33	81	6	78	23	27	24	24	2.00
31632458--31632563	31	3.5	31	76	17	123	26	16	8	48	1.75
31632468--31632521	28	2.0	27	85	10	74	25	16	7	50	1.71
31632516--31632582	32	2.1	31	88	2	98	28	16	8	46	1.77
31632824--31632880	29	2.2	26	84	15	73	49	0	17	33	1.47
31633514--31633551	19	2.0	19	100	0	76	31	5	21	42	1.75
31637430--31637569	42	3.4	42	81	15	177	51	0	10	38	1.36
31639777--31639814	16	2.4	16	86	8	51	28	5	13	52	1.61
31643540--31643595	22	2.5	22	97	0	103	75	12	0	12	1.06
31644203--31644267	30	2.2	29	78	10	78	24	7	3	64	1.34
31652048--31652096	11	4.3	12	82	12	68	83	0	16	0	0.64
31653342--31654010	81	8.2	81	86	3	853	32	27	15	24	1.96
31653935--31654262	45	7.3	45	80	6	319	31	23	17	27	1.97
31653935--31654262	90	3.6	90	84	5	382	31	23	17	27	1.97
31653630--31654263	45	14.8	44	74	12	207	31	25	17	25	1.97
31655081--31655154	25	3.0	25	73	11	62	25	4	2	67	1.21
31655457--31655509	22	2.3	24	83	6	65	26	3	7	62	1.39
31656213--31656492	28	10.6	28	70	15	159	36	15	25	22	1.94
31656189--31656311	52	2.4	52	83	2	176	34	15	27	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31656213--31656379	80	2.1	80	86	0	226	36	14	25	23	1.93
31656293--31656521	52	4.4	52	84	6	295	35	16	26	21	1.94
31656183--31656517	24	13.0	24	69	14	127	34	16	27	22	1.95
31656197--31656442	132	1.9	132	87	0	366	35	15	26	22	1.94
31656397--31656490	26	3.6	27	68	17	81	34	17	27	21	1.95
31656301--31656521	102	2.1	104	85	4	306	35	16	26	21	1.95
31656537--31656597	24	2.5	24	78	0	68	21	24	13	40	1.88
31661956--31662147	24	8.0	24	76	2	107	20	25	17	36	1.94
31661957--31662146	48	4.0	48	74	4	168	21	25	16	36	1.94
31661950--31662117	72	2.3	72	85	0	219	22	24	16	37	1.93
31665290--31665322	15	2.1	16	88	5	50	30	6	12	51	1.63
31666325--31666377	26	2.0	26	88	0	79	33	20	15	30	1.93
31670594--31670667	23	3.3	23	82	3	96	31	24	17	27	1.97
31671747--31671771	2	12.5	2	100	0	50	48	0	0	52	1.00
31672977--31673365	196	2.0	195	96	0	724	30	14	26	28	1.95
31683195--31683260	33	2.0	33	100	0	132	24	18	24	33	1.97
31685839--31685891	26	2.0	26	96	0	97	28	11	20	39	1.87
31687413--31687456	12	3.7	12	79	11	54	0	29	0	70	0.88
31696909--31697275	25	14.6	25	85	0	457	24	19	22	33	1.97
31696909--31697275	75	4.9	75	93	1	549	24	19	22	33	1.97
31700563--31700602	16	2.5	17	88	8	57	10	2	7	80	1.00
31701905--31701944	21	1.9	21	85	10	55	10	32	0	57	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31708329--31708414	28	3.1	28	89	0	127	23	27	17	31	1.97
31711861--31711918	27	2.2	25	85	11	73	41	1	0	56	1.09
31712644--31712874	45	5.3	45	84	8	298	20	7	46	25	1.76
31712644--31712874	87	2.6	87	90	3	347	20	7	46	25	1.76
31712755--31712898	24	6.3	23	67	20	88	21	7	47	22	1.76
31722777--31722822	24	1.9	23	86	8	65	56	6	2	34	1.37
31722837--31722875	21	1.9	20	84	5	51	58	7	0	33	1.26
31726799--31726844	19	2.4	19	86	13	60	41	13	23	21	1.88
31727879--31728050	29	5.9	29	79	2	166	19	13	22	44	1.85
31727879--31728070	58	3.3	58	74	5	199	19	14	22	44	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182