genome.fa.s9.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  138  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43112859--43112927	16	4.6	15	75	17	54	37	1	0	60	1.06
43113630--43113739	17	6.4	17	79	2	121	55	5	1	37	1.34
43113843--43113887	17	2.6	18	85	3	56	64	2	4	28	1.25
43115099--43115132	16	2.1	17	88	5	52	26	11	11	50	1.73
43119491--43119546	29	2.0	28	86	10	78	50	3	1	44	1.29
43119813--43119843	6	5.3	6	92	7	55	83	0	0	16	0.64
43120546--43120587	22	2.0	22	85	4	59	23	2	35	38	1.68
43122464--43122503	19	2.1	20	86	9	57	30	5	2	62	1.29
43126271--43126439	84	2.0	84	97	0	320	50	10	9	29	1.67
43130941--43131096	66	2.4	65	88	2	231	41	17	26	14	1.88
43131410--43131550	43	3.3	43	84	0	192	26	20	29	23	1.99
43131765--43131820	24	2.3	23	85	8	76	35	3	0	60	1.14
43133612--43133654	20	2.4	19	85	14	56	37	2	2	58	1.24
43149950--43150170	117	1.9	117	84	3	302	28	12	10	47	1.75
43159045--43159077	3	11.3	3	93	6	59	66	0	0	33	0.92
43167376--43167445	31	2.3	30	88	9	106	32	27	0	40	1.57
43167462--43167506	25	1.9	24	86	13	67	53	2	0	44	1.13
43173583--43173645	24	2.7	24	78	11	76	55	6	14	23	1.62
43173586--43173646	23	2.6	23	78	19	72	54	6	14	24	1.64
43175873--43175923	16	3.4	15	75	5	50	27	27	19	25	1.99
43177123--43177160	19	1.9	20	84	10	51	47	2	2	47	1.30
43177659--43177692	17	1.9	18	88	5	52	64	2	0	32	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43178316--43178574	143	1.9	141	80	8	314	36	0	13	49	1.48
43178368--43178641	143	1.9	142	82	9	342	37	0	15	45	1.51
43179599--43179638	19	2.2	17	86	8	53	0	35	0	65	0.93
43181522--43181969	195	2.3	195	84	3	580	27	20	27	24	1.99
43186148--43186243	41	2.3	41	91	3	149	37	25	6	31	1.81
43186233--43186271	17	2.3	17	90	0	60	46	25	12	15	1.81
43192336--43192384	21	2.3	21	79	6	55	32	26	14	26	1.94
43192503--43192572	36	1.9	36	91	5	115	25	41	11	21	1.86
43192766--43192816	21	2.4	21	80	6	59	33	25	13	27	1.94
43192935--43193006	36	2.0	36	100	0	144	25	41	11	22	1.86
43192269--43193138	432	2.0	432	97	0	1625	35	22	13	28	1.92
43193753--43194035	52	5.5	51	84	6	270	36	23	14	25	1.92
43193792--43194042	104	2.4	104	89	2	371	35	23	15	25	1.94
43193757--43194041	156	1.8	156	84	3	394	36	23	14	25	1.93
43195657--43195711	12	4.8	12	82	13	71	38	1	1	58	1.20
43195657--43195727	3	23.3	3	71	8	54	35	2	2	59	1.27
43196454--43196495	6	7.3	6	78	10	52	57	0	2	40	1.12
43196454--43196544	17	5.2	17	77	5	92	54	4	4	36	1.40
43196465--43196533	36	1.9	36	88	5	104	56	5	4	33	1.43
43196965--43197226	78	3.4	78	83	1	301	26	17	30	25	1.97
43196954--43197176	39	5.7	39	73	7	175	26	20	29	23	1.99
43197077--43197214	39	3.6	37	72	12	107	30	19	25	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43197281--43197482	101	2.0	101	87	1	289	29	18	17	34	1.94
43197675--43197936	99	2.7	97	86	4	348	13	26	21	38	1.91
43197688--43197989	147	2.1	145	87	1	433	12	26	21	39	1.89
43197689--43198104	48	8.5	49	79	6	360	13	26	20	38	1.90
43198643--43198740	48	2.0	49	84	5	128	38	7	25	28	1.82
43204508--43204690	96	1.9	96	84	4	244	38	13	18	30	1.88
43204907--43204968	28	2.2	28	91	5	99	29	9	29	32	1.89
43205008--43205088	29	2.8	29	77	15	89	28	6	30	34	1.82
43205008--43205134	57	2.2	59	83	11	163	33	6	28	31	1.82
43205095--43205156	30	2.1	30	84	6	81	33	3	29	33	1.74
43206265--43206319	3	18.3	3	85	7	76	36	0	1	61	1.06
43206260--43206344	12	7.2	12	78	14	61	32	4	3	58	1.36
43207086--43207160	17	4.4	17	76	3	69	54	4	4	37	1.38
43207065--43207112	23	2.1	23	88	0	69	52	0	2	45	1.12
43207076--43207158	41	2.0	41	81	4	96	57	3	3	34	1.33
43209754--43209893	69	2.0	69	100	0	280	38	27	17	17	1.91
43239558--43239694	31	4.5	31	75	14	131	25	17	10	45	1.81
43239558--43239749	91	2.1	90	82	6	228	24	16	12	46	1.81
43239954--43240059	29	3.6	28	78	13	124	42	11	19	26	1.85
43239918--43240089	60	2.9	60	94	0	292	45	11	18	24	1.83
43240466--43240505	20	2.0	21	95	5	73	15	20	15	50	1.79
43241413--43241454	20	2.0	21	86	9	59	30	2	14	52	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43244988--43245157	63	2.8	60	86	9	236	52	4	0	42	1.24
43246244--43246299	22	2.5	22	88	0	76	55	23	12	8	1.65
43247510--43247589	41	2.0	41	84	0	106	22	2	12	62	1.42
43247566--43247591	12	2.2	12	100	0	52	23	0	7	69	1.14
43248786--43248837	18	3.0	17	78	10	61	48	0	0	51	1.00
43248940--43249026	40	2.2	40	86	6	117	42	0	3	54	1.17
43250153--43250203	21	2.4	21	80	3	57	52	0	1	45	1.12
43250187--43250236	22	2.4	22	86	6	68	68	0	0	32	0.90
43259816--43259895	41	1.9	42	87	7	119	23	13	11	51	1.74
43263821--43263853	16	2.1	16	88	11	50	51	6	9	33	1.58
43266553--43266599	18	2.8	16	81	12	58	65	4	0	29	1.11
43268327--43268360	6	5.7	6	100	0	68	85	0	0	14	0.60
43277561--43277600	21	2.0	22	85	14	59	62	2	10	25	1.39
43279643--43279687	23	2.0	23	86	0	63	57	11	2	28	1.45
43294517--43294557	6	6.8	6	100	0	82	51	14	0	34	1.43
43294649--43294787	30	4.7	29	79	7	136	34	5	20	40	1.74
43300475--43300519	19	2.4	19	92	0	72	42	17	15	24	1.88
43305601--43305766	77	2.1	79	81	8	189	25	13	24	35	1.93
43305818--43305950	50	2.7	50	89	0	185	21	26	18	34	1.96
43307894--43307940	20	2.3	20	89	7	69	8	8	14	68	1.39
43307926--43308008	23	3.6	22	74	15	62	8	3	15	72	1.23
43307862--43307964	52	1.9	53	84	3	136	8	6	18	66	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43307967--43308006	12	3.3	12	89	0	62	10	0	15	75	1.05
43307978--43308030	21	2.5	21	81	6	63	9	0	16	73	1.08
43318089--43318140	21	2.5	22	82	17	67	71	3	1	23	1.13
43318257--43318482	30	7.6	30	77	10	171	35	7	20	36	1.80
43318248--43318451	59	3.4	60	75	11	168	36	6	20	37	1.78
43319546--43319581	8	4.2	8	89	10	54	25	0	0	75	0.81
43319586--43319614	14	2.0	15	93	6	51	82	0	0	17	0.66
43321413--43321472	30	2.0	31	87	6	88	58	1	0	40	1.08
43321807--43321853	14	3.3	14	80	13	60	23	0	0	76	0.78
43321797--43321851	23	2.3	24	84	9	69	21	0	1	76	0.88
43323278--43323346	28	2.6	25	80	15	75	52	4	7	36	1.49
43325375--43325418	22	2.0	22	82	4	54	22	6	11	59	1.55
43328879--43328932	23	2.3	23	90	6	83	38	20	18	22	1.93
43331024--43331076	19	2.9	18	75	10	54	30	1	0	67	1.01
43338790--43338946	81	1.9	82	80	11	180	43	4	4	47	1.43
43339280--43339664	183	2.1	187	90	5	606	43	9	6	40	1.64
43340008--43340039	3	10.7	3	100	0	64	68	0	0	31	0.90
43341084--43341110	14	1.9	14	100	0	54	22	18	7	51	1.70
43347393--43347422	15	2.0	15	100	0	60	13	33	0	53	1.40
43350095--43350255	23	6.9	23	82	6	157	42	23	23	10	1.85
43356345--43356458	23	5.0	23	79	4	115	40	23	24	11	1.88
43356345--43356458	46	2.5	45	78	12	133	40	23	24	11	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43356321--43356458	23	5.9	23	78	7	111	39	23	25	11	1.88
43356724--43356792	34	2.0	34	100	0	138	33	20	8	37	1.83
43358263--43358302	19	2.1	19	85	4	53	50	2	2	45	1.28
43369194--43370145	93	10.4	93	67	15	419	32	16	25	25	1.96
43368980--43370165	273	4.4	273	84	2	1403	33	16	24	26	1.96
43372274--43372316	19	2.3	19	80	11	54	20	0	9	69	1.15
43377820--43377911	39	2.4	39	87	5	125	42	26	17	14	1.87
43379192--43379241	20	2.5	20	87	12	68	52	12	2	34	1.50
43379226--43379276	27	1.9	26	88	4	75	60	17	0	21	1.36
43380314--43380347	18	1.9	17	88	5	50	64	0	14	20	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182