genome.fa.s9.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  49  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16960009--16960043	11	3.2	11	83	0	52	22	14	40	22	1.90
16960091--16960130	21	1.9	21	89	0	62	15	5	32	47	1.66
16960266--16960298	2	16.5	2	100	0	66	51	0	0	48	1.00
16962057--16962148	29	3.1	29	68	13	71	56	3	2	38	1.28
16967245--16967282	20	1.9	20	94	0	67	50	13	5	31	1.63
16977749--16977799	9	5.6	9	80	13	59	68	0	0	31	0.90
16978087--16978125	20	2.0	20	94	0	69	53	12	2	30	1.52
16993866--16993954	39	2.3	39	92	2	142	32	16	11	39	1.84
16998836--16999399	293	1.9	294	91	0	932	29	27	12	30	1.93
17001288--17001659	59	6.3	58	80	8	351	35	3	25	35	1.73
17001294--17001642	118	3.0	118	87	3	472	35	3	24	36	1.72
17014829--17015168	29	11.7	29	68	18	163	34	3	28	33	1.74
17014826--17015189	59	6.2	59	87	4	515	34	3	28	32	1.76
17014917--17015189	29	9.4	29	71	22	173	35	2	29	31	1.73
17023134--17023206	19	3.8	20	75	18	66	60	1	0	38	1.06
17023158--17023182	12	2.1	12	100	0	50	60	0	0	40	0.97
17023950--17023978	14	2.1	14	93	6	51	34	0	0	65	0.93
17026269--17026316	16	3.1	16	78	6	62	37	10	2	50	1.49
17026269--17026324	15	3.6	14	79	15	58	33	10	1	53	1.46
17026817--17026865	20	2.5	20	83	3	64	46	0	44	8	1.33
17027052--17027077	8	3.2	8	100	0	52	23	0	0	76	0.78
17027073--17027162	17	5.2	17	77	7	83	37	4	3	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17029142--17029253	29	3.8	30	77	8	97	38	23	0	37	1.61
17029205--17029515	117	2.7	118	79	8	323	36	22	4	36	1.76
17029181--17029534	59	6.1	58	76	7	252	36	22	5	35	1.76
17034541--17034580	16	2.5	16	84	11	55	82	2	15	0	0.77
17034874--17034964	45	2.0	45	93	0	155	23	18	12	46	1.82
17035298--17035356	31	1.9	30	86	3	82	47	0	5	47	1.24
17035281--17035372	17	5.6	17	76	7	82	46	0	4	48	1.21
17035280--17035372	48	1.9	48	82	4	116	47	0	4	48	1.21
17036136--17036170	18	1.9	18	94	0	61	51	2	0	45	1.16
17037240--17037390	30	5.1	29	73	11	121	35	27	2	34	1.71
17037221--17037390	58	2.9	58	82	9	184	37	27	2	32	1.70
17037230--17037392	59	2.8	58	82	7	195	37	26	3	32	1.72
17039249--17039877	48	12.9	48	77	7	534	38	23	25	12	1.90
17039177--17039877	96	7.1	97	79	7	648	38	23	26	12	1.90
17039177--17039794	144	4.2	146	80	5	627	38	23	26	11	1.89
17039249--17039877	197	3.2	194	83	5	734	38	23	25	12	1.90
17039345--17039931	98	6.0	97	76	10	401	38	21	25	14	1.91
17040015--17040218	101	2.0	100	88	0	300	34	15	18	31	1.93
17040306--17040458	78	2.0	78	81	2	182	24	26	19	29	1.99
17040393--17040565	39	4.4	40	76	8	160	26	31	15	26	1.96
17040348--17040571	116	1.9	117	84	4	301	25	29	18	25	1.98
17040985--17041074	17	5.2	17	77	7	83	37	4	4	53	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17040996--17041063	35	1.9	35	88	5	102	33	4	5	55	1.44
17041836--17041868	15	2.2	15	94	0	57	51	0	0	48	1.00
17043067--17043250	29	6.3	29	72	14	148	33	28	2	35	1.69
17043114--17043382	29	9.2	29	73	18	177	35	27	4	33	1.77
17043069--17043370	59	5.2	59	81	9	296	33	27	3	35	1.75
17047143--17047174	12	2.7	12	95	0	55	68	9	15	6	1.36
17052134--17052171	19	2.0	19	100	0	76	31	5	5	57	1.43
17054482--17054560	6	13.2	6	83	0	86	29	44	8	17	1.79
17054486--17054556	24	3.0	24	85	0	97	29	42	9	18	1.82
17056447--17056480	16	2.0	18	88	11	54	50	2	0	47	1.16
17061238--17061274	19	1.9	19	88	0	56	21	8	13	56	1.63
17073965--17074113	56	2.6	56	82	6	149	45	13	16	24	1.83
17073982--17074113	56	2.3	58	83	5	162	43	14	16	25	1.86
17075687--17075711	3	8.3	3	100	0	50	0	32	0	68	0.90
17076875--17076905	16	1.9	16	93	0	53	22	0	0	77	0.77
17081861--17081902	21	1.9	23	85	9	61	50	4	9	35	1.56
17082698--17082733	18	2.0	18	94	0	63	52	2	0	44	1.15
17082998--17083046	22	2.2	23	81	3	55	65	2	4	28	1.22
17085878--17085902	6	4.2	6	100	0	50	0	32	16	52	1.44
17088012--17088072	31	2.0	31	83	6	79	36	13	11	39	1.80
17091412--17091461	21	2.4	21	76	6	57	52	2	0	46	1.12
17099830--17099876	24	2.0	24	82	0	58	29	8	25	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17103085--17103191	31	3.5	31	71	12	112	26	19	9	44	1.81
17103417--17103520	29	3.5	29	71	19	88	44	13	15	26	1.84
17103512--17103668	31	5.3	31	64	20	100	46	11	16	25	1.80
17103423--17103668	59	4.1	59	90	2	323	46	12	16	24	1.81
17103547--17103638	28	3.2	28	66	19	80	45	8	18	27	1.78
17103701--17103733	4	8.2	4	100	0	66	75	0	24	0	0.80
17106395--17106440	3	15.0	3	90	4	74	65	0	2	32	1.05
17116414--17116687	118	2.3	119	93	1	462	31	20	11	37	1.88
17117772--17117813	15	2.6	16	85	7	59	52	0	2	45	1.13
17120684--17120716	12	2.8	12	82	17	50	48	0	0	51	1.00
17121021--17121063	22	2.0	22	100	0	86	51	4	11	32	1.59
17121557--17121608	27	2.0	27	88	7	81	42	0	0	57	0.98
17123039--17123067	15	1.9	15	100	0	58	48	34	3	13	1.60
17123273--17123315	21	2.0	21	95	0	77	2	48	23	25	1.62
17123278--17123314	11	3.5	11	79	20	51	0	48	24	27	1.51
17123301--17123457	65	2.4	66	85	1	226	15	24	17	42	1.87
17129285--17129464	68	2.6	69	83	5	220	46	1	6	46	1.37
17129285--17129475	69	2.8	67	83	9	230	46	1	5	46	1.36
17129376--17129434	30	2.0	29	83	12	75	50	3	1	44	1.28
17129202--17129562	188	2.0	182	84	6	467	44	1	7	46	1.41
17129356--17129711	120	3.1	111	81	9	394	44	1	6	48	1.37
17129280--17129819	180	3.0	174	78	12	479	44	1	6	47	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17129585--17129764	68	2.6	69	85	4	236	45	1	5	48	1.31
17129202--17129945	300	2.5	302	92	2	1222	43	1	6	48	1.38
17129378--17130048	112	6.0	112	74	12	345	44	2	5	48	1.36
17129657--17129945	113	2.6	112	87	2	411	41	2	4	51	1.35
17129816--17129921	42	2.5	42	78	4	108	37	0	4	56	1.27
17129467--17129886	188	2.3	179	83	7	472	42	1	5	49	1.37
17129907--17129996	20	4.4	21	69	18	64	54	3	0	42	1.17
17129563--17129936	181	2.1	181	79	8	406	43	2	4	50	1.34
17129908--17129994	30	2.9	30	100	0	174	56	3	0	40	1.16
17130008--17130083	8	9.1	8	74	7	53	51	1	1	46	1.17
17130006--17130116	33	3.7	30	76	13	97	47	1	3	46	1.30
17132977--17133055	41	1.9	41	94	0	140	21	24	21	32	1.98
17134462--17134806	41	8.4	40	85	3	404	14	33	25	26	1.94
17136465--17136591	30	4.3	28	70	14	76	38	4	22	34	1.75
17136478--17136818	30	11.5	30	70	14	151	35	3	24	36	1.73
17136592--17136729	29	4.7	28	75	10	98	34	2	26	36	1.71
17136564--17136817	59	4.3	57	78	10	167	33	3	26	36	1.74
17136569--17136849	30	9.5	29	75	11	180	34	3	24	37	1.72
17136656--17136817	59	2.7	59	83	4	193	35	3	24	36	1.71
17136665--17136835	59	2.9	59	80	4	157	34	3	25	36	1.73
17138485--17138558	11	7.0	11	75	17	68	59	1	0	39	1.06
17138481--17138557	17	4.5	17	93	3	136	58	1	0	40	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17138481--17138557	6	13.3	6	75	13	72	58	1	0	40	1.06
17138481--17138557	35	2.2	34	95	2	136	58	1	0	40	1.06
17139035--17139841	39	20.7	39	73	5	565	26	19	29	23	1.98
17139031--17139841	78	10.4	78	83	2	808	26	19	29	23	1.98
17141212--17141280	10	7.0	10	76	17	65	1	17	1	79	0.88
17141210--17141280	15	4.8	16	75	17	57	1	16	1	80	0.86
17141213--17141276	30	2.1	31	91	2	103	1	15	1	81	0.85
17141210--17141276	11	6.2	10	77	17	64	1	14	1	82	0.82
17142533--17142597	6	10.5	6	74	12	60	41	1	4	52	1.31
17142533--17142581	20	2.6	18	90	6	71	38	2	4	55	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182