genome.fa.s9.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  168  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50915145--50915182	14	2.7	14	100	0	76	50	15	18	15	1.79
50917906--50917952	14	3.5	13	75	13	51	10	6	2	80	0.96
50917900--50917952	28	2.0	26	85	7	70	15	5	1	77	1.04
50917907--50917958	28	2.0	27	85	14	74	9	7	1	80	0.97
50917949--50917995	23	2.0	25	83	8	62	6	31	6	55	1.51
50920331--50920390	29	2.0	30	83	3	77	51	10	3	35	1.52
50924078--50924116	18	2.2	18	85	0	51	46	2	0	51	1.14
50936243--50936297	18	3.0	18	83	2	65	60	0	0	40	0.97
50937184--50937300	41	3.0	41	73	17	142	29	0	5	63	1.24
50937229--50937300	33	2.2	32	85	2	99	31	1	5	61	1.28
50937827--50937861	14	2.3	15	90	9	54	31	0	0	68	0.90
50942818--50942872	29	1.9	28	85	3	74	45	10	7	36	1.67
50944589--50944683	47	2.0	47	89	0	145	33	13	16	35	1.88
50956744--50956781	16	2.4	16	95	0	67	44	0	2	52	1.14
50958664--50959053	29	13.4	29	74	9	251	36	23	4	34	1.76
50958667--50959112	59	7.7	58	78	7	302	36	23	4	34	1.76
50958667--50959063	117	3.4	115	76	7	306	36	23	4	34	1.76
50958848--50959296	58	7.7	58	78	5	193	36	24	4	34	1.75
50959024--50959204	59	3.1	56	74	8	157	36	26	4	32	1.78
50964814--50964846	15	2.2	15	94	0	57	45	9	12	33	1.73
50971490--50971529	12	3.3	12	85	0	53	20	20	12	47	1.81
50971490--50971547	23	2.4	25	86	8	77	20	17	13	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50972657--50972690	12	2.9	11	87	12	50	17	23	8	50	1.74
50972665--50972691	12	2.2	12	100	0	54	14	22	7	55	1.64
50977529--50977815	26	11.1	24	81	4	196	27	27	16	27	1.97
50977529--50977815	52	5.5	52	86	1	371	27	27	16	27	1.97
50977529--50977815	78	3.7	77	83	1	369	27	27	16	27	1.97
50978884--50978928	21	2.2	21	84	4	56	31	13	13	42	1.82
50984189--50984308	58	2.1	58	96	0	222	30	11	11	46	1.76
50985465--50985556	27	3.3	27	75	3	76	45	2	4	47	1.34
50985478--50985522	16	2.8	16	89	3	63	40	0	2	57	1.11
50985493--50985533	17	2.4	17	87	0	55	46	2	0	51	1.14
50986324--50986363	16	2.5	16	91	0	71	62	5	0	32	1.17
50987488--50988094	30	20.7	30	67	21	176	34	30	2	32	1.71
50987488--50988130	29	21.9	28	66	22	152	34	30	2	32	1.71
50987481--50988132	59	11.1	59	80	7	650	34	30	2	32	1.71
50988647--50988977	153	2.2	152	85	5	436	34	16	13	36	1.87
50990168--50990599	139	3.0	138	79	12	422	32	18	7	41	1.79
50992689--50992758	22	3.2	22	76	11	81	41	0	7	51	1.29
50992683--50992766	43	2.0	43	95	0	150	40	0	5	53	1.25
50994111--50994193	41	2.0	41	90	0	130	31	1	4	62	1.23
50995592--50995688	40	2.5	39	91	5	160	23	16	7	52	1.68
50998579--50998619	18	2.2	20	86	8	59	68	4	0	26	1.10
51000150--51000188	9	4.6	9	84	12	55	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51000142--51000188	16	2.8	16	87	9	58	63	0	0	36	0.94
51000146--51000196	25	2.1	24	92	3	84	62	1	0	35	1.06
51000141--51000281	25	5.2	26	65	18	83	57	4	2	35	1.32
51000234--51000272	9	4.6	9	84	12	55	64	0	0	35	0.94
51000226--51000272	16	2.8	16	87	9	58	63	0	0	36	0.94
51000120--51000287	84	2.0	84	98	0	327	53	5	3	37	1.41
51000368--51000438	33	2.2	31	75	9	72	33	8	16	40	1.79
51000716--51000750	17	2.1	17	88	0	52	40	2	11	45	1.55
51007152--51007190	17	2.3	17	90	0	60	46	25	12	15	1.81
51017301--51017383	31	2.6	31	86	1	103	19	15	15	49	1.80
51022280--51022344	27	2.4	27	89	5	96	32	7	23	36	1.83
51023715--51023759	20	2.2	21	77	18	51	62	6	0	31	1.21
51023763--51023805	21	2.1	21	83	12	54	62	2	6	27	1.33
51024407--51024445	18	2.2	17	86	4	51	64	0	0	35	0.94
51029429--51029479	24	2.1	24	88	0	75	21	9	11	56	1.63
51029437--51029491	24	2.3	24	83	0	65	25	12	12	49	1.76
51031349--51031420	16	4.5	16	92	0	117	36	4	31	27	1.76
51031402--51031495	44	2.1	44	86	7	127	30	5	26	37	1.79
51031590--51031736	58	2.5	58	82	9	181	49	1	2	46	1.24
51035318--51035405	15	6.0	14	71	17	54	50	2	0	47	1.13
51035279--51035405	58	2.2	58	84	9	163	50	1	0	47	1.16
51043970--51044012	21	2.0	22	81	9	52	51	4	4	39	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51043994--51044073	35	2.3	35	93	0	133	36	7	6	50	1.56
51048494--51049002	149	3.5	145	80	10	527	33	16	6	44	1.73
51057870--51057910	17	2.3	19	80	20	52	68	7	0	24	1.15
51063211--51063237	2	13.5	2	100	0	54	51	0	0	48	1.00
51086503--51086536	6	5.7	6	92	0	50	2	2	32	61	1.26
51086503--51086541	12	3.2	12	88	0	51	5	5	28	61	1.39
51091036--51091096	31	2.0	31	87	12	90	31	16	9	42	1.81
51094379--51094588	108	1.9	108	95	1	377	23	25	19	31	1.98
51097357--51097427	29	2.5	28	77	6	72	39	2	1	56	1.23
51097789--51097840	22	2.4	22	81	15	63	55	5	0	38	1.24
51097829--51097902	27	2.7	27	78	13	80	60	1	5	32	1.27
51097829--51097902	29	2.7	27	82	13	89	60	1	5	32	1.27
51099666--51099705	20	2.0	20	85	4	55	55	0	2	42	1.13
51112925--51112949	3	8.3	3	100	0	50	68	32	0	0	0.90
51121683--51121717	17	2.1	17	88	0	52	40	0	2	57	1.14
51123215--51123260	24	1.9	24	86	8	67	56	2	0	41	1.11
51123775--51123817	20	2.2	20	83	8	52	48	0	4	46	1.22
51128752--51129006	59	4.4	58	88	3	334	33	3	30	31	1.75
51128759--51129243	29	16.5	30	66	19	206	33	2	30	32	1.73
51128988--51129268	59	4.8	58	84	4	343	31	2	31	34	1.73
51128838--51129154	147	2.2	146	83	6	383	33	2	30	33	1.73
51128992--51129268	117	2.4	117	88	3	405	32	2	30	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51128753--51129273	88	5.9	86	68	17	270	32	3	31	32	1.74
51130237--51130274	17	2.3	16	90	4	58	47	0	0	52	1.00
51130986--51131097	17	6.4	16	75	13	80	51	3	3	41	1.36
51131019--51131067	6	8.2	6	81	6	55	55	4	0	40	1.19
51131019--51131067	23	2.0	25	84	7	66	55	4	0	40	1.19
51130986--51131097	35	3.2	35	82	7	104	51	3	3	41	1.36
51131906--51131943	19	2.0	20	89	5	60	36	13	0	50	1.42
51133158--51133191	11	3.0	11	91	8	59	47	0	0	52	1.00
51133143--51133268	17	7.5	17	72	17	77	43	3	3	50	1.34
51133158--51133232	6	12.7	6	75	13	75	42	2	1	53	1.23
51134917--51135060	29	5.0	29	75	20	140	34	31	2	31	1.70
51134918--51135059	58	2.4	58	90	4	232	35	30	2	31	1.70
51134922--51135125	29	6.9	29	71	20	102	33	28	2	34	1.72
51134921--51135124	59	3.5	59	82	8	245	34	28	2	34	1.72
51137064--51137125	30	2.0	33	81	15	78	54	3	0	41	1.16
51144114--51144171	22	2.6	21	76	10	53	63	8	13	13	1.51
51148593--51148643	26	1.9	27	88	4	77	33	3	3	58	1.35
51148727--51148783	22	2.6	22	73	13	55	64	7	5	22	1.38
51149531--51149789	138	1.9	140	83	6	348	42	6	6	43	1.58
51150900--51150943	16	2.7	15	83	16	52	34	0	0	65	0.93
51158617--51159635	334	3.0	340	96	2	1906	40	9	15	34	1.80
51162717--51162773	29	1.9	30	85	3	80	36	10	17	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51170625--51170677	10	5.6	10	74	17	51	49	1	0	49	1.12
51172377--51172410	15	2.4	14	90	5	50	67	0	2	29	1.05
51172805--51172838	16	2.0	18	88	11	54	64	0	2	32	1.08
51173552--51173590	16	2.3	18	86	8	55	61	0	2	35	1.10
51173565--51173605	14	2.8	15	85	7	57	63	2	0	34	1.08
51189512--51189570	31	1.9	31	82	3	75	23	1	22	52	1.56
51189550--51189636	31	2.8	31	94	0	147	25	6	25	42	1.79
51190865--51190938	28	2.5	30	82	8	89	43	2	4	50	1.35
51192679--51192734	24	2.3	25	78	12	62	30	1	0	67	1.01
51194240--51194290	19	2.7	19	77	20	61	60	1	0	37	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182