genome.fa.s9.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  174  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52743173--52743301	51	2.5	49	78	9	132	40	6	17	36	1.74
52748111--52748212	51	2.0	51	100	0	204	19	43	9	27	1.82
52754281--52754326	23	2.0	23	91	0	74	39	6	15	39	1.73
52755435--52755473	16	2.4	16	100	0	78	25	25	7	41	1.82
52767805--52767853	25	2.1	25	85	14	70	53	2	26	18	1.56
52769985--52770009	3	8.3	3	100	0	50	32	0	0	68	0.90
52770664--52770714	25	2.0	25	100	0	102	31	7	27	33	1.85
52783845--52783891	18	2.6	17	80	9	58	57	0	0	42	0.98
52788658--52788752	43	2.2	43	94	1	165	37	7	10	44	1.67
52793451--52793509	25	2.4	25	80	11	59	47	5	3	44	1.42
52798016--52798045	3	10.0	3	100	0	60	66	0	0	33	0.92
52799297--52799332	18	2.0	18	88	0	54	72	11	0	16	1.12
52810763--52811291	123	5.0	100	71	18	381	29	17	10	43	1.81
52810532--52811163	235	2.8	222	84	6	783	30	16	9	43	1.80
52818851--52818908	30	1.9	30	89	0	89	34	13	5	46	1.66
52818854--52818918	30	2.2	30	85	0	85	38	13	4	43	1.65
52825640--52825682	19	2.3	19	87	0	59	32	0	6	60	1.23
52826394--52826704	81	3.8	81	88	0	453	34	21	17	26	1.96
52827913--52827947	18	1.9	18	88	0	52	42	11	2	42	1.55
52828465--52829014	81	6.8	80	86	1	686	30	22	18	28	1.97
52830231--52830597	76	4.8	76	92	1	522	33	15	19	32	1.93
52830238--52830594	38	9.4	38	70	15	220	33	14	19	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52830186--52830603	152	2.8	149	86	5	533	33	15	19	31	1.93
52830941--52831003	6	10.3	6	80	16	76	46	1	1	50	1.20
52830966--52831022	26	2.2	26	81	6	62	50	5	0	43	1.24
52831685--52831731	12	3.8	12	83	8	58	59	0	2	38	1.09
52831696--52831736	14	3.1	14	86	6	59	65	0	0	34	0.93
52831985--52832029	23	2.0	23	87	8	67	82	4	6	6	0.95
52832464--52832793	162	2.0	163	85	2	450	25	14	14	46	1.82
52832872--52833259	30	13.1	30	71	12	180	34	28	3	32	1.76
52832973--52833399	59	7.3	59	90	1	617	32	29	4	33	1.79
52845362--52846004	68	9.0	68	92	4	827	33	16	19	30	1.94
52845362--52846081	143	5.0	142	89	5	870	33	16	19	30	1.95
52845369--52846081	211	3.3	212	89	3	973	33	16	19	30	1.94
52845369--52846087	68	9.9	74	91	3	820	33	16	19	30	1.94
52846427--52846504	17	4.8	16	80	13	79	44	3	1	50	1.28
52846425--52846504	6	13.3	6	77	15	85	45	3	1	50	1.28
52846425--52846501	31	2.6	29	88	8	118	44	3	1	50	1.28
52846425--52846512	31	2.9	29	82	12	90	45	4	1	48	1.30
52847186--52847232	12	3.8	12	83	8	58	59	0	2	38	1.09
52847197--52847237	14	3.1	14	86	6	59	65	0	0	34	0.93
52847486--52847530	23	2.0	23	87	8	67	82	4	6	6	0.95
52847964--52848293	162	2.0	163	85	2	450	25	14	13	46	1.82
52848382--52848523	30	4.7	30	79	6	128	34	26	3	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52848473--52848964	59	8.4	59	91	0	700	31	29	5	33	1.80
52852008--52852071	30	2.2	30	81	10	71	28	3	28	40	1.71
52852053--52852128	27	2.7	28	83	6	91	35	3	25	35	1.74
52852131--52852232	29	3.6	29	77	15	97	32	2	25	39	1.71
52853076--52853112	18	2.1	18	100	0	74	27	16	5	51	1.66
52853999--52854042	17	2.6	17	92	0	70	56	6	0	36	1.26
52854099--52854508	81	5.1	81	89	0	586	30	22	18	29	1.97
52860792--52860859	31	2.2	31	86	5	93	33	8	11	45	1.72
52861836--52861886	23	2.3	23	83	10	61	29	5	7	56	1.51
52863336--52863383	17	2.8	17	93	6	80	22	10	10	56	1.63
52867681--52867810	17	7.5	17	83	7	163	54	2	1	41	1.22
52867666--52867746	29	2.8	29	77	9	76	49	2	3	44	1.33
52867681--52867810	35	3.7	34	85	8	163	54	2	1	41	1.22
52867676--52867778	6	17.7	6	75	13	90	52	0	1	44	1.18
52868047--52868384	40	7.5	39	64	25	118	34	17	15	32	1.91
52868047--52868626	92	6.3	92	94	0	962	34	17	15	33	1.91
52868317--52868563	40	5.6	40	66	24	122	35	16	14	33	1.89
52869988--52870037	15	3.3	15	85	0	73	0	10	6	84	0.79
52869988--52870046	30	1.9	31	89	3	93	1	8	6	83	0.89
52870825--52870876	10	5.2	10	77	13	54	5	0	7	86	0.70
52875457--52875770	58	5.3	60	81	7	320	36	2	29	31	1.71
52875500--52875864	30	12.3	30	69	21	132	38	2	26	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52875457--52875772	59	5.4	58	78	9	275	36	2	29	31	1.71
52875500--52875770	59	4.6	60	82	6	320	37	2	27	32	1.69
52875729--52875963	30	7.9	29	79	8	195	37	3	23	35	1.73
52875736--52875958	60	3.7	59	83	4	261	37	3	22	36	1.72
52875764--52875949	90	2.1	89	83	3	230	38	3	19	37	1.70
52877116--52877174	12	5.5	11	80	12	54	35	3	1	59	1.24
52877777--52877877	17	5.8	17	87	4	148	55	0	0	42	1.13
52877772--52877877	29	3.7	28	75	9	72	53	0	1	43	1.18
52877777--52877877	35	2.9	34	88	5	148	55	0	0	42	1.13
52877810--52877912	41	2.5	41	87	6	138	55	2	0	40	1.21
52877772--52877880	6	18.7	6	76	12	102	52	0	1	44	1.18
52877782--52877894	35	3.2	35	83	2	111	55	1	0	41	1.16
52879206--52879234	6	4.8	6	100	0	58	48	17	0	34	1.47
52881566--52881659	6	16.0	6	75	12	79	48	1	2	47	1.20
52881570--52881620	17	3.1	15	84	15	66	41	0	3	54	1.19
52881556--52881620	11	5.9	11	77	13	55	40	0	4	55	1.21
52881737--52881775	12	2.9	14	81	14	55	38	28	17	15	1.91
52883194--52883511	162	2.0	163	85	6	441	26	15	10	47	1.78
52883600--52883801	30	6.7	30	90	3	284	38	26	2	32	1.72
52883783--52884036	29	8.7	29	68	14	139	31	29	6	32	1.82
52883780--52884036	58	4.4	59	86	3	333	31	29	6	32	1.82
52895777--52896085	37	8.7	38	71	22	246	33	20	19	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52895777--52896084	68	4.4	67	86	11	431	33	19	19	26	1.96
52895952--52896063	32	3.4	32	72	10	118	35	17	19	26	1.94
52907332--52908309	38	27.6	38	73	17	824	33	18	20	27	1.96
52907297--52908341	216	4.9	209	92	5	1519	33	18	20	27	1.96
52907697--52908341	69	9.3	68	92	4	1042	33	17	20	27	1.96
52908637--52908730	6	16.0	6	75	12	79	48	1	2	47	1.20
52908641--52908691	17	3.1	15	84	15	66	41	0	3	54	1.19
52908627--52908691	11	5.9	11	77	13	55	40	0	4	55	1.21
52908808--52908846	12	2.9	14	81	14	55	38	28	17	15	1.91
52910264--52910581	162	2.0	163	86	6	450	25	15	11	47	1.79
52910670--52910900	30	7.7	30	92	3	344	38	26	2	32	1.70
52910821--52910875	15	3.3	19	63	36	54	40	27	3	29	1.73
52910675--52911031	59	6.0	59	84	9	199	37	27	3	31	1.74
52910670--52910900	89	2.6	88	90	4	311	38	26	2	32	1.70
52910879--52911135	58	4.4	59	87	3	333	32	29	6	31	1.82
52910880--52911128	29	8.5	30	68	18	125	33	28	5	32	1.80
52910880--52911128	117	2.1	117	87	3	351	33	28	5	32	1.80
52919312--52919346	12	2.9	12	91	0	61	51	0	28	20	1.47
52919312--52919343	6	5.3	6	92	0	55	53	0	28	18	1.45
52922300--52922743	99	4.5	99	93	0	726	27	25	20	26	1.99
52922300--52922833	99	5.3	98	89	3	694	26	24	21	27	1.99
52922657--52922933	108	2.6	108	83	4	337	24	22	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52929349--52929385	15	2.5	15	86	0	56	62	10	8	18	1.52
52929349--52929385	10	3.7	10	92	0	65	62	10	8	18	1.52
52934817--52934869	4	12.8	4	80	7	52	18	5	3	71	1.21
52934839--52934869	12	2.6	12	100	0	62	16	6	0	77	0.97
52938584--52938676	46	2.0	46	100	0	186	32	6	21	39	1.79
52945203--52945227	2	12.5	2	100	0	50	52	0	0	48	1.00
52945458--52945516	26	2.3	26	79	5	66	40	6	1	50	1.39
52953891--52953939	24	2.0	25	92	4	82	12	18	18	51	1.76
52954446--52954497	3	17.3	3	100	0	104	67	0	0	32	0.91
52955556--52955631	13	5.8	13	78	3	89	35	22	25	17	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182