genome.fa.s9.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  115  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37246590--37246695	43	2.4	43	93	6	178	21	3	33	40	1.71
37247004--37247062	25	2.3	24	77	11	64	66	3	0	30	1.08
37252039--37252095	21	2.7	21	81	5	62	15	10	31	42	1.81
37253897--37253936	13	2.9	14	88	7	55	52	10	0	37	1.35
37253919--37253963	21	2.2	20	84	11	56	55	6	4	33	1.46
37254206--37254245	4	10.0	4	100	0	80	50	25	0	25	1.50
37254669--37254694	12	2.2	12	100	0	52	42	15	7	34	1.75
37256853--37256902	24	2.0	25	88	3	75	26	28	0	46	1.53
37262340--37262427	10	9.0	10	72	15	69	29	3	1	65	1.16
37262360--37262426	18	3.6	18	75	22	57	26	2	1	68	1.12
37263954--37264015	2	30.0	2	78	12	63	43	4	4	46	1.46
37275619--37275733	50	2.3	50	80	0	140	38	18	20	22	1.94
37275639--37275748	50	2.2	50	83	3	141	36	18	20	24	1.95
37276243--37276281	10	3.5	11	83	13	53	41	2	2	53	1.28
37279831--37279860	2	15.0	2	92	0	51	46	0	0	53	1.00
37290318--37290352	3	11.7	3	100	0	70	68	0	0	31	0.90
37299452--37299491	20	2.0	20	90	0	62	37	0	5	57	1.21
37301434--37301478	19	2.4	19	81	7	56	37	0	4	57	1.19
37307892--37307926	3	12.0	3	93	6	63	31	0	0	68	0.90
37309463--37309507	19	2.4	19	81	7	56	37	0	4	57	1.19
37310540--37310588	18	2.7	18	78	9	55	40	6	4	48	1.47
37310678--37310717	14	2.7	15	92	7	73	47	27	10	15	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37310678--37310739	14	4.4	14	81	4	72	41	27	11	19	1.85
37311663--37311693	16	1.9	16	93	0	53	16	22	22	38	1.92
37312284--37312622	162	2.1	162	88	1	491	25	17	13	43	1.86
37312724--37312785	30	2.1	30	82	8	74	38	25	4	30	1.77
37312750--37313050	59	5.1	59	87	4	410	33	26	2	37	1.69
37312782--37313060	30	9.4	29	67	20	159	32	26	2	38	1.69
37312753--37313103	118	3.0	118	84	5	374	30	28	3	37	1.75
37325185--37325689	76	6.9	76	87	5	613	33	16	19	30	1.94
37325266--37325606	38	9.3	38	68	20	226	33	15	19	31	1.93
37325456--37325568	31	3.4	31	70	15	109	36	15	19	28	1.93
37326217--37326265	18	2.7	18	78	9	55	40	6	4	48	1.47
37326355--37326394	14	2.7	15	92	7	73	47	27	10	15	1.77
37326355--37326416	14	4.4	14	81	4	72	41	27	11	19	1.85
37332479--37332544	2	33.0	2	100	0	132	0	0	50	50	1.00
37340244--37340360	31	3.9	29	71	19	96	44	11	17	26	1.82
37343404--37343455	25	2.1	25	100	0	104	36	15	11	36	1.84
37346404--37346462	27	2.2	27	87	0	82	47	18	1	32	1.59
37352461--37352503	11	3.8	11	80	17	52	30	2	2	65	1.18
37352464--37352507	23	1.9	23	90	0	70	31	2	4	61	1.28
37355847--37355907	30	2.0	30	96	0	113	54	14	14	16	1.72
37361958--37362083	50	2.5	50	94	1	227	32	0	30	36	1.58
37369028--37369073	18	2.6	18	89	0	74	45	19	17	17	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37370531--37370571	21	1.9	22	85	14	59	51	7	7	34	1.58
37371303--37371374	30	2.3	30	85	4	90	31	4	6	56	1.45
37371578--37371654	39	2.0	39	92	5	129	57	14	7	20	1.62
37372959--37373241	132	2.1	133	81	3	338	39	20	14	26	1.90
37373822--37373876	28	2.0	28	88	0	83	50	0	5	43	1.25
37374151--37374197	24	2.0	23	84	8	60	38	4	6	51	1.47
37377041--37377080	15	2.7	15	88	7	55	60	0	0	40	0.97
37378141--37378204	29	2.1	32	85	8	89	56	1	1	40	1.18
37381964--37382009	16	2.9	16	78	12	58	56	0	26	17	1.41
37382860--37382890	15	2.0	16	93	6	55	35	6	12	45	1.68
37384936--37384978	14	3.2	13	77	9	50	25	9	11	53	1.67
37386502--37386553	24	2.2	22	86	13	68	73	1	7	17	1.16
37386501--37386575	26	3.0	27	79	18	90	72	2	6	18	1.19
37386501--37386553	23	2.2	25	90	10	83	73	1	7	16	1.15
37387376--37387431	19	2.8	19	86	7	76	67	1	21	8	1.27
37387401--37387444	19	2.3	19	84	4	52	70	2	18	9	1.24
37389211--37389387	50	3.5	50	86	1	201	36	14	13	36	1.85
37389238--37389414	50	3.5	50	82	6	178	34	12	14	38	1.83
37395120--37395173	21	2.6	21	82	5	65	31	27	12	27	1.93
37397595--37397619	12	2.1	12	100	0	50	32	20	24	24	1.98
37408136--37408210	18	4.2	18	78	10	73	50	17	8	24	1.72
37415408--37416300	298	3.0	298	94	0	1588	29	11	21	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37418840--37418909	31	2.2	32	92	2	115	48	17	2	31	1.61
37422760--37422896	26	5.3	26	75	8	127	22	23	21	32	1.98
37422753--37422896	52	2.8	52	84	0	180	22	23	20	32	1.98
37423030--37423222	24	8.0	24	82	0	197	21	25	16	36	1.94
37423050--37423222	48	3.6	48	81	0	220	21	24	16	38	1.93
37423052--37423226	72	2.4	72	81	0	224	21	24	15	38	1.92
37425762--37425803	5	8.8	5	82	10	52	11	0	4	83	0.79
37425762--37425804	9	4.6	9	85	2	50	11	0	4	83	0.78
37425761--37425812	24	2.2	24	82	6	61	11	3	3	80	0.97
37468391--37468443	22	2.3	22	78	12	54	50	3	3	41	1.38
37468770--37468806	18	2.1	18	89	0	56	70	0	2	27	1.01
37473560--37473602	21	2.0	21	86	0	59	25	39	11	23	1.88
37475281--37475322	3	14.0	3	100	0	84	66	0	0	33	0.92
37475546--37475581	15	2.4	15	86	13	56	33	0	0	66	0.92
37476350--37476377	3	9.3	3	100	0	56	32	32	0	35	1.58
37480949--37480990	21	2.0	21	86	4	59	42	11	11	33	1.78
37482453--37482499	22	2.1	23	84	11	62	34	17	12	36	1.87
37484481--37484640	9	17.1	9	64	20	53	33	5	1	60	1.26
37484465--37484631	28	6.0	28	70	18	91	33	4	1	61	1.23
37485241--37485277	17	2.1	18	95	5	67	29	0	0	70	0.88
37485536--37485561	12	2.2	12	100	0	52	42	19	0	38	1.51
37494351--37494386	17	2.0	19	89	10	58	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37494344--37494395	19	2.7	20	82	14	65	28	0	5	65	1.16
37494662--37494687	13	2.0	13	100	0	52	38	7	30	23	1.83
37502948--37502985	14	3.1	12	88	11	51	18	2	0	78	0.86
37502960--37503148	97	2.0	94	83	5	236	21	12	5	60	1.51
37503154--37503207	4	13.5	4	81	11	58	22	1	0	75	0.89
37503157--37503209	27	2.0	27	88	7	81	20	3	0	75	0.96
37503156--37503234	32	2.4	32	79	6	79	22	6	2	68	1.25
37503323--37503381	3	20.3	3	79	6	68	32	1	3	62	1.21
37504227--37504304	37	2.1	38	83	13	99	7	3	15	73	1.21
37504212--37504298	29	3.0	29	73	8	86	8	4	16	71	1.27
37504258--37504309	21	2.5	21	74	0	59	7	3	17	71	1.25
37505351--37505398	25	1.9	25	83	8	62	56	2	4	37	1.30
37505405--37505579	97	1.8	94	82	3	224	30	5	4	59	1.39
37505576--37505613	20	2.0	20	89	5	60	55	0	0	44	0.99
37505588--37505628	15	2.8	15	75	17	50	60	0	0	39	0.96
37508474--37508520	24	2.0	24	100	0	94	38	17	8	36	1.80
37528102--37528147	23	2.0	23	83	8	58	34	2	6	56	1.37
37528191--37528234	23	1.9	23	82	17	56	61	4	0	34	1.16
37528265--37528331	16	4.2	16	84	0	80	47	2	20	28	1.65
37529481--37529531	21	2.4	21	83	0	75	56	9	5	27	1.54
37532025--37532084	29	2.1	29	90	0	93	38	20	13	28	1.90
37534029--37534068	21	1.9	21	94	0	71	55	12	17	15	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37535007--37535041	18	1.9	18	88	0	52	28	5	14	51	1.65
37541704--37541749	20	2.3	20	88	3	67	41	2	23	32	1.67
37543450--37543482	16	2.1	16	94	0	57	51	15	12	21	1.75
37552265--37552429	55	3.0	55	81	5	194	29	16	24	29	1.96
37553450--37553499	23	2.1	24	96	3	93	50	12	20	18	1.78
37553450--37553492	12	3.6	12	79	20	54	51	11	20	16	1.75
37553450--37553506	23	2.4	23	88	2	87	50	10	19	19	1.75
37571117--37571153	6	5.8	6	87	12	56	70	0	0	29	0.88
37571123--37571152	14	2.1	14	100	0	60	73	0	0	26	0.84
37572148--37572185	19	2.0	19	85	10	51	28	2	7	60	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182