genome.fa.s9.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  146  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45068474--45068521	21	2.3	21	88	0	69	35	18	8	37	1.81
45069681--45069729	15	3.3	15	81	16	57	22	2	0	75	0.90
45074287--45074341	27	2.0	27	96	0	101	27	29	5	38	1.79
45079028--45079055	2	14.0	2	100	0	56	0	50	0	50	1.00
45092672--45092709	18	2.2	18	85	4	51	13	26	5	55	1.59
45094529--45094616	6	14.2	6	76	7	68	3	21	3	71	1.16
45098384--45098448	29	2.2	29	97	2	121	55	0	10	33	1.35
45098515--45098563	27	1.9	25	84	12	64	28	0	2	69	1.00
45098558--45098625	26	2.7	25	81	4	73	41	0	1	57	1.08
45099739--45099763	7	3.6	7	100	0	50	44	0	0	56	0.99
45121675--45121707	11	2.8	12	86	4	50	54	0	0	45	0.99
45122088--45122164	21	3.7	21	92	3	111	46	7	19	25	1.76
45128743--45128796	28	1.9	28	88	0	81	27	12	27	31	1.93
45130121--45130215	50	1.9	49	82	6	120	34	10	17	36	1.85
45130456--45130487	16	2.0	16	100	0	64	75	0	6	18	1.01
45132962--45133038	28	2.7	28	76	13	77	18	10	3	67	1.35
45135091--45135131	21	2.0	21	85	9	57	17	31	12	39	1.86
45135492--45135527	18	2.1	17	89	5	54	5	16	5	72	1.23
45135497--45135552	20	2.7	20	81	13	60	8	14	3	73	1.21
45135509--45135555	25	1.9	25	87	12	71	10	12	4	72	1.25
45135509--45135615	28	4.0	27	79	14	98	15	13	3	67	1.37
45136163--45136195	17	1.9	17	88	11	50	27	0	6	66	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45136390--45136542	50	3.1	50	73	9	125	35	16	13	34	1.87
45137787--45137843	21	2.7	21	83	10	71	71	3	12	12	1.25
45137787--45137844	20	2.8	20	80	17	64	70	3	13	12	1.28
45138728--45138815	42	2.2	39	84	15	117	65	1	20	12	1.31
45138788--45138824	11	3.3	11	85	7	56	72	0	16	10	1.10
45138787--45138824	12	3.2	12	85	7	60	73	0	15	10	1.09
45140288--45140320	17	1.9	17	88	11	50	27	0	6	66	1.15
45140533--45140670	50	2.7	51	84	7	165	38	13	13	35	1.83
45141861--45141913	18	2.9	18	77	8	54	71	1	11	15	1.22
45141871--45141947	26	2.9	26	84	5	93	72	2	10	14	1.21
45142639--45142683	18	2.4	18	85	10	56	64	4	20	11	1.42
45144999--45145033	12	2.9	12	86	0	52	42	0	34	22	1.54
45150751--45150801	6	8.5	6	82	0	57	45	1	29	23	1.64
45153172--45153241	27	2.6	26	80	13	79	72	2	10	14	1.21
45154293--45154336	18	2.4	18	88	7	63	63	4	20	11	1.44
45155727--45155759	17	1.9	17	88	11	50	27	0	6	66	1.15
45155954--45156074	50	2.4	50	80	1	125	36	15	12	35	1.85
45159233--45159312	39	2.0	40	92	2	135	31	17	20	31	1.95
45160694--45160724	14	2.3	13	94	5	53	22	6	0	70	1.09
45161118--45161167	19	2.7	19	75	9	50	12	20	0	68	1.21
45161480--45161516	17	2.1	17	90	10	56	29	0	0	70	0.88
45162327--45162384	24	2.4	24	77	11	57	53	0	13	32	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45165055--45165165	30	3.8	30	81	8	111	36	20	5	36	1.76
45165084--45165178	30	3.2	29	77	11	95	40	18	5	35	1.74
45174652--45174706	27	2.0	27	100	0	110	43	10	21	23	1.84
45178115--45178145	12	2.6	12	89	0	53	29	3	9	58	1.46
45195040--45195166	64	2.0	64	88	0	191	30	16	20	32	1.95
45195567--45195635	28	2.5	28	88	7	104	24	17	33	24	1.96
45198527--45198676	37	4.1	37	75	4	106	20	21	30	27	1.98
45207423--45207453	2	15.5	2	100	0	62	51	0	0	48	1.00
45208981--45209020	21	1.9	21	89	0	62	27	10	22	40	1.86
45212771--45212832	21	3.0	21	78	0	70	43	8	11	37	1.70
45212869--45212910	7	6.0	7	97	0	57	50	0	7	42	1.30
45212869--45212910	14	3.0	14	92	0	66	50	0	7	42	1.30
45212863--45212910	21	2.3	20	85	3	60	50	2	6	41	1.39
45213355--45213410	29	1.9	30	85	7	80	37	0	3	58	1.15
45213887--45213927	14	2.7	16	77	14	50	29	0	0	70	0.87
45215840--45215886	2	23.5	2	100	0	94	48	0	0	51	1.00
45217359--45217387	15	1.9	15	100	0	58	0	0	13	86	0.58
45241065--45241099	16	2.2	16	90	5	54	82	2	0	14	0.77
45256576--45256605	4	7.5	4	100	0	60	50	26	0	23	1.50
45262482--45262513	9	3.4	9	95	4	55	43	3	0	53	1.16
45262561--45262620	26	2.2	28	72	19	65	35	11	5	48	1.61
45263902--45263940	9	4.3	9	83	0	51	71	7	0	20	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45263905--45263939	18	1.9	18	100	0	70	74	8	0	17	1.06
45275808--45275861	30	1.9	28	85	14	76	33	7	5	53	1.52
45275906--45275961	28	2.0	28	83	10	71	50	0	0	50	1.00
45275917--45275976	22	2.6	24	76	5	61	43	0	0	56	0.99
45275940--45275978	15	2.4	16	87	8	53	35	0	0	64	0.94
45275936--45276044	32	3.8	29	72	18	86	43	0	2	54	1.15
45283298--45283331	3	11.3	3	100	0	68	67	0	0	32	0.91
45284398--45284535	7	20.4	7	74	7	97	37	22	21	18	1.94
45284411--45284524	55	2.1	54	86	1	156	38	21	21	18	1.93
45284411--45284535	20	6.2	20	77	9	101	37	22	21	18	1.94
45284395--45284490	13	7.2	13	83	5	104	40	22	19	16	1.91
45284526--45284587	11	5.6	11	76	0	70	24	25	30	19	1.98
45284526--45284598	22	3.3	22	90	0	101	26	27	28	17	1.98
45284689--45284751	25	2.5	25	77	10	74	28	3	25	42	1.70
45290500--45290548	23	2.1	23	84	3	62	61	16	2	20	1.44
45290592--45290633	3	14.3	3	95	5	77	69	0	0	30	0.89
45291703--45291829	7	18.7	7	74	9	57	38	21	20	19	1.94
45291702--45291835	27	4.7	28	80	9	130	39	20	20	19	1.93
45291703--45291802	20	4.9	20	81	3	119	39	21	20	20	1.93
45292433--45292466	11	3.2	11	87	8	52	73	0	23	2	0.97
45297219--45297322	37	2.7	38	76	5	93	32	26	18	22	1.97
45298190--45298257	11	5.8	12	75	14	54	55	1	0	42	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45298654--45298762	6	18.0	6	74	16	82	49	0	1	47	1.18
45298658--45298722	17	4.1	15	81	15	78	43	0	3	53	1.16
45298662--45298725	31	2.1	31	91	5	103	43	0	3	53	1.16
45298644--45298724	11	7.5	11	72	19	64	41	0	3	54	1.18
45298654--45298747	42	2.3	41	83	5	109	47	0	2	50	1.13
45298710--45298762	20	2.8	18	80	11	52	60	1	0	37	1.08
45299866--45299920	24	2.3	24	96	0	101	12	38	41	7	1.71
45300371--45300492	30	4.2	29	76	13	115	32	25	4	36	1.77
45300371--45300479	30	3.7	29	80	10	123	34	24	3	36	1.73
45300501--45300766	62	4.4	60	79	10	240	30	28	6	34	1.81
45300501--45300766	120	2.2	121	80	12	305	30	28	6	34	1.81
45312692--45313148	31	13.6	30	65	27	142	33	15	20	30	1.94
45312645--45313305	69	9.7	69	92	3	1013	33	16	20	30	1.94
45312645--45313305	137	4.8	137	91	3	1025	33	16	20	30	1.94
45313669--45313767	6	16.2	6	75	15	78	50	1	2	46	1.19
45313668--45313731	31	2.1	31	91	5	103	43	0	3	53	1.16
45313661--45313724	25	2.7	25	81	9	73	40	0	3	56	1.15
45313659--45313730	11	6.7	11	72	20	55	41	0	2	55	1.14
45313661--45313728	17	4.3	15	82	14	84	41	0	2	55	1.15
45313716--45313767	20	2.8	17	80	13	50	59	1	0	38	1.08
45313921--45313952	13	2.5	13	94	0	55	25	59	6	9	1.52
45315354--45315597	30	8.2	30	88	4	336	36	25	2	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45315354--45315574	59	3.7	60	93	1	365	36	24	3	35	1.72
45315355--45315595	89	2.7	88	89	4	353	36	25	2	35	1.70
45315549--45315801	29	8.6	29	70	10	149	32	28	5	33	1.79
45315355--45315628	89	3.1	87	85	7	340	36	25	3	35	1.72
45315575--45315826	59	4.3	59	91	0	380	32	28	5	34	1.79
45315607--45315776	30	5.7	30	71	9	134	31	28	5	34	1.80
45315578--45315826	118	2.1	117	94	0	435	32	27	5	34	1.79
45315607--45315826	30	7.5	28	67	16	97	31	27	5	35	1.79
45319136--45319196	28	2.2	27	82	8	70	32	11	22	32	1.90
45319181--45319570	30	13.2	29	66	23	104	36	3	27	32	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182