genome.fa.s9.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  36  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13684810--13684874	10	6.5	10	71	18	55	43	3	1	52	1.26
13689366--13689397	13	2.5	13	94	0	55	50	12	25	12	1.75
13692140--13692173	15	2.3	15	89	0	50	35	5	5	52	1.50
13693108--13693158	25	2.0	27	84	7	70	33	0	1	64	1.05
13696449--13696478	6	5.0	6	100	0	60	16	0	0	83	0.65
13696761--13696809	25	2.0	25	88	4	73	48	4	6	40	1.47
13703431--13703489	24	2.4	24	78	10	66	66	1	0	32	1.02
13704700--13704842	72	2.0	72	95	0	259	48	27	16	8	1.74
13725523--13725990	232	2.0	232	99	0	927	33	21	17	27	1.96
13727610--13727654	18	2.3	18	81	11	54	73	2	2	22	1.05
13727750--13727802	25	2.0	27	82	7	65	60	1	1	35	1.19
13728311--13728366	22	2.5	21	83	13	60	50	0	1	48	1.11
13728356--13728414	19	3.2	19	72	11	59	64	3	1	30	1.20
13728356--13728423	19	3.6	18	71	13	57	61	2	2	32	1.26
13729079--13729119	21	2.0	21	85	0	55	36	7	19	36	1.80
13732368--13732434	21	3.2	21	78	4	73	20	8	38	31	1.84
13732438--13732644	42	4.9	42	78	5	168	25	7	42	23	1.80
13732438--13732623	63	3.0	63	78	0	192	26	7	42	23	1.80
13732437--13732665	21	10.9	21	78	2	122	25	8	42	23	1.82
13732505--13732707	63	3.2	62	76	10	157	24	8	41	25	1.83
13732679--13732761	21	4.0	21	88	0	103	26	9	37	26	1.87
13732634--13732755	42	2.9	42	81	2	129	22	9	41	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13732826--13732970	42	3.5	41	83	3	166	26	13	39	20	1.90
13732850--13732971	21	5.8	21	84	5	133	28	15	36	18	1.92
13739413--13739445	16	2.1	16	94	0	57	39	6	21	33	1.78
13747336--13747392	26	2.1	27	83	3	71	21	40	19	19	1.92
13747372--13747439	15	4.7	15	75	14	61	22	39	14	23	1.91
13747372--13747440	29	2.4	30	85	7	97	21	39	15	23	1.92
13748710--13748752	17	2.7	15	76	16	50	30	0	4	65	1.13
13748857--13749076	121	1.8	121	84	5	302	26	19	5	47	1.72
13750098--13750136	20	2.0	20	84	0	51	35	0	20	43	1.52
13751228--13751373	29	4.9	28	70	16	105	45	10	17	25	1.81
13751296--13751391	31	3.2	31	71	16	110	44	9	18	27	1.80
13751229--13751393	60	2.7	60	88	3	242	46	10	18	24	1.80
13752011--13752057	20	2.3	20	92	7	78	46	4	10	38	1.58
13753107--13753160	21	2.9	18	82	15	65	55	16	0	27	1.42
13754431--13754480	26	1.9	26	95	0	91	16	36	24	24	1.94
13756266--13756305	2	20.0	2	100	0	80	50	0	0	50	1.00
13758679--13758733	25	2.2	24	81	12	58	45	0	7	47	1.30
13768619--13768656	19	2.1	19	90	5	60	57	0	2	39	1.12
13774205--13774237	6	5.5	6	96	0	57	0	36	0	63	0.95
13781430--13781551	56	2.2	56	96	0	226	32	26	9	31	1.87
13784869--13784900	17	1.9	17	93	6	57	25	0	3	71	1.00
13784882--13784933	27	2.0	24	82	10	59	26	7	3	61	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13784905--13784975	31	2.2	33	82	9	85	23	8	9	57	1.58
13784927--13784988	32	2.0	31	83	3	79	24	11	14	50	1.75
13795124--13795163	21	2.0	21	85	5	55	30	5	2	62	1.29
13796441--13796465	13	1.9	13	100	0	50	44	0	0	56	0.99
13796423--13796525	55	1.9	53	86	7	145	51	0	4	42	1.29
13801310--13801338	12	2.3	13	94	5	51	65	0	10	24	1.23
13806120--13806146	14	1.9	14	100	0	54	29	18	37	14	1.91
13811790--13811845	24	2.3	24	93	0	103	30	25	21	23	1.99
13814550--13814589	15	2.6	16	88	4	55	60	0	0	40	0.97
13818286--13818315	4	7.5	4	100	0	60	0	0	73	26	0.84
13819472--13819523	6	8.7	6	95	0	86	17	30	19	32	1.95
13820059--13820086	6	4.7	6	100	0	56	0	17	50	32	1.47
13822928--13822961	8	4.4	8	92	3	52	41	0	0	58	0.98
13838725--13838788	33	1.9	33	81	6	76	29	1	6	62	1.29
13838754--13838841	20	4.5	19	72	12	79	32	3	1	62	1.19
13839539--13839639	50	2.0	51	82	1	123	62	3	3	29	1.31
13840043--13840096	25	2.1	26	82	3	65	37	5	1	55	1.34
13840491--13840521	16	1.9	16	93	0	53	29	0	3	67	1.06
13859509--13859582	27	2.7	27	87	0	103	35	16	22	25	1.95
13860376--13860400	2	12.5	2	100	0	50	0	48	0	52	1.00
13861246--13861283	3	12.7	3	94	0	67	0	0	28	71	0.87
13865487--13866410	184	5.0	184	100	0	1848	30	20	17	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13868378--13868419	16	2.6	16	85	7	50	73	2	9	14	1.18
13874004--13874074	31	2.3	31	82	0	79	61	7	5	25	1.43
13884279--13884314	19	1.9	18	88	5	54	61	0	0	38	0.96
13893022--13893056	16	2.2	16	100	0	70	51	11	0	37	1.38
13893021--13893058	20	1.9	20	94	0	67	50	13	0	36	1.42
13904440--13904474	18	1.9	18	88	11	54	31	17	0	51	1.45
13907347--13907385	20	1.9	21	89	5	62	48	7	2	41	1.45
13913628--13913706	34	2.3	34	80	6	88	32	0	5	62	1.17
13926285--13926333	15	3.2	16	83	11	50	24	2	0	73	0.94
13926285--13926351	16	4.4	15	75	17	50	23	5	0	70	1.09
13935958--13936155	99	2.0	99	93	0	342	36	8	31	23	1.85
13936240--13936293	17	3.3	17	71	26	53	51	0	31	16	1.45
13936299--13936391	22	4.6	21	71	18	72	44	0	1	54	1.07
13936308--13936391	31	2.7	32	85	5	118	42	0	1	55	1.07
13941370--13941409	21	1.9	21	94	0	71	15	12	17	55	1.70
13943206--13943265	25	2.7	20	75	22	57	33	1	3	61	1.22
13943246--13943270	9	2.8	9	100	0	50	32	0	0	68	0.90
13943285--13943335	11	4.5	11	79	13	59	64	1	0	33	1.05
13943278--13943335	23	2.6	23	84	13	84	62	1	0	36	1.06
13951015--13951042	2	14.0	2	100	0	56	50	0	0	50	1.00
13952492--13952522	3	10.3	3	100	0	62	32	0	0	67	0.91
13959241--13959268	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13963604--13963682	38	2.0	40	83	9	101	49	2	6	41	1.42
13975371--13975435	26	2.4	26	94	5	112	66	6	24	3	1.29
13981073--13981098	6	4.3	6	100	0	52	0	0	15	84	0.62
13982867--13982918	21	2.5	22	84	9	65	28	0	1	69	0.99
13985885--13986014	53	2.5	53	88	3	183	27	15	24	32	1.95
13987982--13988034	23	2.3	23	80	0	61	35	9	7	47	1.64
13988935--13989038	22	5.0	22	67	22	64	45	0	1	52	1.11
13988991--13989035	23	2.0	23	81	0	54	44	0	2	53	1.13
13988938--13989041	31	3.4	29	81	12	113	48	0	1	50	1.12
13988936--13989050	60	1.9	60	85	7	162	46	0	1	51	1.11
13990077--13990145	28	2.3	30	80	11	72	50	1	0	47	1.09
13990077--13990139	31	2.1	31	90	3	101	52	1	0	46	1.10
13995594--13995639	23	2.0	23	91	0	74	63	6	4	26	1.38
13996711--13996739	11	2.6	11	100	0	58	13	0	37	48	1.43
13999446--13999529	38	2.3	37	85	4	107	29	2	3	64	1.23
14000570--14000611	18	2.3	19	79	4	50	16	9	4	69	1.33
14000569--14000610	19	2.2	19	83	8	50	16	7	4	71	1.26
14004789--14004848	26	2.3	24	76	20	59	40	1	3	55	1.27
14004945--14005220	91	3.0	91	100	0	552	35	7	7	49	1.60
14006063--14006988	308	3.0	308	99	0	1825	22	19	23	34	1.97
14009711--14009774	27	2.4	27	86	2	85	50	7	3	39	1.47
14011592--14011697	13	8.1	13	71	14	56	38	16	2	41	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14012667--14012712	19	2.5	19	78	3	58	41	0	2	56	1.11
14036710--14036743	16	2.1	16	88	0	50	26	2	0	70	1.01
14045655--14045698	21	2.2	20	84	12	54	27	0	6	65	1.17
14047595--14047619	2	12.5	2	100	0	50	52	0	0	48	1.00
14047748--14047830	32	2.6	32	82	3	105	67	7	10	14	1.41
14051402--14051429	2	14.0	2	100	0	56	0	50	0	50	1.00
14054525--14054582	11	5.1	11	83	10	64	39	1	1	56	1.19
14054527--14054584	6	10.0	6	75	14	59	41	1	1	55	1.20
14054527--14054584	17	3.4	17	87	2	89	41	1	1	55	1.20
14054527--14054596	34	2.1	34	86	5	97	44	1	2	51	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182