genome.fa.s9.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  14  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5617212--5617305	47	2.0	47	100	0	188	29	10	27	31	1.90
5624666--5624716	26	2.0	26	84	0	66	47	1	0	50	1.12
5624678--5624745	18	3.6	19	81	15	70	45	1	0	52	1.09
5624844--5624899	22	2.5	22	77	11	69	44	8	3	42	1.53
5632501--5632542	5	8.4	5	97	0	75	40	2	40	16	1.62
5643213--5643246	14	2.4	14	90	5	50	0	32	0	67	0.91
5651023--5651186	55	3.0	54	78	7	141	42	7	19	29	1.79
5654933--5655165	59	4.0	58	80	9	269	24	17	18	40	1.90
5654934--5655166	117	2.0	116	90	4	371	24	17	18	40	1.91
5655895--5655931	13	3.0	13	84	11	51	64	0	0	35	0.94
5659600--5659787	51	3.6	51	80	3	198	30	15	25	28	1.96
5661440--5662156	84	8.5	84	93	1	1159	43	5	3	47	1.44
5661440--5662156	251	2.8	252	92	1	1186	43	5	3	47	1.44
5661440--5662156	167	4.3	168	94	1	1204	43	5	3	47	1.44
5662249--5662309	22	2.8	22	84	0	77	40	31	6	21	1.78
5664548--5664633	30	2.9	30	91	0	127	26	8	4	60	1.45
5664585--5664645	30	2.0	30	90	0	95	29	11	3	55	1.51
5665450--5665565	59	2.0	59	82	3	144	31	17	19	31	1.95
5665476--5665628	83	1.8	83	85	2	218	35	13	18	32	1.90
5665567--5666149	58	9.9	58	73	12	381	38	16	18	26	1.92
5665585--5665989	117	3.4	115	80	10	417	39	16	19	25	1.91
5665565--5666149	60	9.9	58	74	14	375	38	16	18	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5665571--5666149	59	9.8	57	73	12	377	38	16	18	26	1.92
5667170--5667211	13	3.3	13	86	6	59	38	14	7	40	1.73
5692855--5692901	23	2.0	23	91	0	76	48	4	12	34	1.61
5697465--5697489	6	4.2	6	100	0	50	32	0	16	52	1.44
5698285--5698326	6	7.0	6	97	0	75	16	2	64	16	1.40
5701721--5701781	26	2.4	25	72	2	59	55	3	1	39	1.26
5702834--5702880	24	2.0	25	87	8	71	46	4	6	42	1.48
5709164--5709265	24	4.5	24	69	13	74	44	1	0	52	1.18
5709175--5709235	30	2.0	30	84	15	81	40	1	1	55	1.19
5709166--5709247	42	1.9	43	90	2	130	41	2	1	54	1.21
5713810--5713843	13	2.6	13	95	0	59	35	8	5	50	1.58
5716226--5716261	17	2.1	17	100	0	72	41	13	5	38	1.68
5741286--5741310	2	12.5	2	100	0	50	0	0	48	52	1.00
5747064--5747101	17	2.2	17	86	9	51	52	0	5	42	1.24
5753440--5753490	20	2.6	19	84	6	57	29	21	13	35	1.92
5756914--5756978	30	2.3	28	82	12	71	46	1	3	49	1.27
5757254--5757315	28	2.2	28	85	5	81	56	9	11	22	1.63
5757267--5757328	28	2.2	28	85	0	79	56	9	16	17	1.66
5758341--5758454	58	2.0	57	81	10	133	29	19	17	33	1.95
5758501--5758582	42	2.0	42	97	0	155	32	26	12	28	1.92
5758396--5758670	144	1.9	144	85	5	378	29	19	16	34	1.94
5758598--5758942	60	5.7	59	74	8	302	27	18	15	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5759116--5759175	31	1.9	31	89	0	93	21	8	23	46	1.78
5759657--5759696	20	2.0	20	86	13	57	60	5	0	35	1.19
5762662--5762709	12	3.7	12	77	20	51	47	0	10	41	1.37
5762927--5763084	45	3.5	46	67	15	130	36	5	5	52	1.47
5762921--5763201	92	3.1	92	89	7	450	38	4	4	52	1.43
5762841--5763216	88	4.3	86	88	7	519	38	6	4	51	1.47
5765637--5765702	30	2.2	30	83	5	80	31	4	4	59	1.38
5767985--5768041	6	9.5	6	81	7	71	17	5	15	61	1.52
5767985--5768041	24	2.4	24	85	5	80	17	5	15	61	1.52
5771568--5771614	24	2.0	24	83	8	60	31	4	14	48	1.63
5774420--5775514	86	12.9	85	91	2	1710	44	4	5	45	1.47
5777809--5777871	27	2.4	25	84	10	83	42	3	3	50	1.34
5778295--5778339	23	2.0	23	100	0	90	51	0	0	48	1.00
5792001--5792057	29	2.0	29	100	0	114	42	7	19	31	1.78
5793810--5793883	33	2.3	33	86	6	98	24	20	9	45	1.80
5796278--5796317	20	2.0	20	100	0	80	40	15	0	45	1.46
5799309--5799352	2	22.0	2	100	0	88	0	50	0	50	1.00
5801625--5801665	21	2.0	21	85	0	55	56	4	0	39	1.21
5807589--5807634	20	2.3	20	85	10	60	41	0	13	45	1.43
5809122--5809184	31	2.0	31	100	0	126	28	15	15	39	1.89
5811977--5812029	20	2.7	19	80	8	52	32	1	3	62	1.24
5819456--5819485	15	1.9	16	93	6	53	23	0	3	73	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5833050--5833096	21	2.2	22	88	3	69	61	21	10	6	1.50
5861077--5861141	32	2.0	32	88	5	96	41	4	12	41	1.63
5861162--5861202	21	2.0	21	85	0	55	53	0	7	39	1.29
5884418--5884451	18	1.9	17	88	5	50	58	5	0	35	1.22
5884835--5884882	15	3.3	14	77	8	51	68	0	0	31	0.90
5884829--5884890	28	2.2	28	82	8	72	59	0	1	38	1.07
5885038--5885083	18	2.3	22	85	14	64	0	19	6	73	1.04
5914463--5914531	29	2.3	30	78	9	79	47	5	7	39	1.55
5914490--5914566	31	2.4	31	79	12	84	45	9	5	40	1.58
5915485--5915509	3	8.3	3	100	0	50	36	32	0	32	1.58
5917461--5917513	23	2.3	23	83	6	63	43	5	5	45	1.51
5922650--5922693	23	1.9	23	86	9	63	45	6	31	15	1.73
5932293--5932328	18	2.0	18	100	0	72	33	16	11	38	1.84
5937454--5937517	32	2.0	31	84	3	83	39	9	12	39	1.75
5939517--5939561	6	7.5	6	89	0	72	20	33	0	46	1.51
5942842--5942892	21	2.4	21	80	0	57	21	15	11	50	1.76
5947840--5947878	19	2.0	21	85	10	55	17	7	0	74	1.05
5961778--5961820	18	2.4	18	88	7	61	46	0	0	53	1.00
5961948--5961998	15	3.5	15	76	15	61	60	1	3	33	1.26
5966265--5966294	14	2.1	14	100	0	60	66	6	0	26	1.16
5971566--5971642	38	2.0	38	94	0	136	38	11	20	28	1.88
5980692--5980795	37	2.7	38	76	5	93	31	26	19	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5980920--5980948	6	4.8	6	100	0	58	17	31	0	51	1.45
5982248--5982274	11	2.5	11	100	0	54	7	14	7	70	1.32
6002663--6002700	20	1.9	20	89	10	60	65	0	10	23	1.23
6009605--6009632	7	4.0	7	100	0	56	42	0	0	57	0.99
6013874--6013918	15	3.0	15	87	9	65	17	11	0	71	1.14
6014306--6014351	15	3.1	15	87	12	76	67	2	0	30	1.03
6019830--6019902	33	2.2	33	85	9	96	10	10	49	28	1.72
6021672--6021701	5	6.0	5	100	0	60	40	40	20	0	1.52
6030801--6030852	2	26.0	2	100	0	104	50	0	0	50	1.00
6034042--6034087	22	2.1	22	100	0	92	30	8	21	39	1.84
6035803--6035845	21	2.0	21	90	0	68	27	30	13	27	1.95
6053120--6053176	30	1.9	30	85	0	78	36	8	14	40	1.76
6055794--6055926	60	2.2	59	86	1	176	25	17	9	48	1.76
6069113--6069169	25	2.3	25	100	0	114	43	21	8	26	1.81
6071368--6071421	20	2.6	21	85	5	74	44	27	0	27	1.55
6071364--6071395	14	2.3	14	100	0	64	43	25	0	31	1.55
6071376--6071428	27	2.0	27	84	0	70	45	32	0	22	1.53
6071355--6071437	20	4.1	20	74	10	69	42	31	1	25	1.63
6079785--6079822	20	1.9	20	84	10	51	68	2	7	21	1.28
6080556--6080621	30	2.2	30	91	0	105	56	15	4	24	1.58
6096641--6096687	10	4.1	11	79	17	51	40	14	0	44	1.46
6103497--6103535	19	2.0	21	90	10	64	43	2	0	53	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6104145--6104178	3	11.3	3	100	0	68	0	32	0	67	0.91
6110007--6110075	25	2.7	26	90	4	104	53	0	2	43	1.15
6111287--6111356	22	3.2	20	82	11	77	35	30	21	12	1.91
6111274--6111379	44	2.4	44	75	15	110	39	25	22	12	1.89
6111250--6111398	23	6.4	23	78	11	98	39	23	24	12	1.89
6117458--6117506	24	2.1	24	85	11	66	53	8	20	18	1.70
6118320--6118394	35	2.2	32	83	6	96	42	4	2	50	1.35
6118320--6118394	33	2.2	34	86	6	100	42	4	2	50	1.35
6119971--6120055	42	2.0	42	86	0	116	29	37	5	27	1.80
6120061--6120318	126	2.0	126	93	1	437	27	28	17	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182