genome.fa.s9.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  160  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48918746--48918811	17	3.9	17	77	0	69	43	3	3	50	1.33
48920715--48920886	60	2.9	59	88	5	235	36	25	2	36	1.69
48920715--48920886	30	5.8	29	82	7	195	36	25	2	36	1.69
48920854--48921079	58	3.9	58	80	10	182	34	20	4	41	1.72
48920949--48921042	30	3.2	29	66	15	77	32	14	5	46	1.67
48920966--48921115	30	5.2	30	67	18	86	31	22	4	41	1.74
48920949--48921115	58	2.9	58	84	6	196	31	20	4	42	1.73
48920843--48921107	116	2.3	115	75	10	245	33	21	3	40	1.72
48930635--48931228	210	2.8	210	90	0	893	30	19	16	33	1.94
48935376--48935432	21	2.7	21	78	5	62	57	8	3	29	1.45
48936101--48936158	29	2.0	29	82	0	71	32	8	13	44	1.75
48936223--48936270	25	1.9	25	82	0	60	54	2	4	39	1.32
48936776--48936829	28	1.9	28	82	14	67	31	5	0	62	1.18
48937486--48937551	6	11.7	6	73	12	50	45	1	1	51	1.19
48937486--48937549	17	3.9	16	78	11	67	45	1	1	51	1.20
48937485--48937530	23	2.0	23	82	0	56	43	0	4	52	1.21
48939667--48939789	24	5.1	24	82	7	160	26	21	21	30	1.98
48939667--48939789	48	2.6	48	92	0	192	26	21	21	30	1.98
48943412--48943453	18	2.3	18	91	0	66	64	0	2	33	1.07
48947043--48947455	210	2.0	210	90	0	657	31	21	15	31	1.94
48948673--48948740	29	2.3	30	75	17	70	55	4	8	30	1.50
48948840--48948902	35	1.9	32	87	12	92	23	28	3	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48952022--48952434	210	2.0	210	87	0	603	31	21	16	31	1.95
48956744--48956800	3	19.7	3	85	7	82	31	3	0	64	1.10
48962861--48962939	11	7.0	11	82	5	86	16	29	27	26	1.97
48962861--48962939	22	3.5	22	84	3	95	16	29	27	26	1.97
48962918--48962965	7	7.0	7	80	4	53	18	25	22	33	1.97
48965980--48966024	14	2.9	16	80	16	58	46	0	0	53	1.00
48966666--48966723	31	1.9	30	86	10	82	34	10	6	48	1.64
48968472--48968533	31	2.0	31	87	6	90	35	11	9	43	1.73
48974238--48974278	18	2.2	20	82	8	50	53	0	4	41	1.22
48974659--48974714	27	2.2	27	78	18	66	53	14	1	30	1.51
48974910--48974951	18	2.3	18	91	0	66	64	0	2	33	1.07
48977969--48978247	29	9.5	28	76	12	192	36	25	2	35	1.70
48977957--48978247	88	3.3	89	82	7	344	35	26	2	35	1.71
48977959--48978253	59	5.0	59	78	10	275	35	26	2	35	1.71
48978349--48978408	28	2.1	28	84	6	77	36	30	6	26	1.82
48978259--48978541	143	2.0	144	88	6	423	30	25	8	35	1.86
48978436--48978713	58	4.8	57	69	11	172	31	24	8	34	1.87
48978491--48978571	28	2.9	28	100	0	162	28	29	12	29	1.93
48978349--48978713	173	2.1	173	93	0	613	30	25	9	34	1.88
48981218--48981266	26	2.0	26	84	8	66	26	10	8	55	1.61
48984246--48984327	17	4.8	17	78	14	89	40	2	2	54	1.26
48985481--48985713	29	8.1	29	75	14	182	33	27	5	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48985485--48985672	58	3.3	57	80	7	211	34	25	5	34	1.80
48985486--48985712	58	4.0	58	77	11	202	33	26	5	34	1.79
48985486--48985728	86	2.8	87	80	10	236	34	25	6	33	1.81
48985691--48985948	119	2.2	118	82	2	295	31	24	6	37	1.81
48985691--48985948	118	2.2	117	82	2	293	31	24	6	37	1.81
48985927--48986001	28	2.6	29	81	8	91	29	29	13	28	1.94
48985811--48986123	146	2.1	146	84	2	405	31	25	8	33	1.86
48986077--48986153	28	2.8	28	82	7	102	33	24	11	29	1.91
48985930--48986297	174	2.1	175	85	4	494	31	24	9	34	1.87
48988379--48988430	24	2.2	24	86	6	70	19	50	7	23	1.73
48988403--48988444	18	2.3	18	87	0	57	21	42	9	26	1.83
48991022--48991428	210	1.9	210	90	1	645	31	20	15	32	1.94
48997519--48997577	31	1.9	31	86	13	86	40	6	8	44	1.61
49003246--49003307	21	2.9	21	82	2	79	56	9	4	29	1.52
49006227--49006284	29	2.0	29	82	0	71	32	8	13	44	1.75
49006349--49006396	25	1.9	25	82	0	60	54	2	4	39	1.32
49007614--49007679	6	11.7	6	76	12	59	45	0	1	53	1.09
49007613--49007658	23	2.0	23	82	0	56	43	0	4	52	1.21
49007617--49007681	33	1.9	35	87	6	98	46	0	1	52	1.10
49007614--49007681	17	4.1	17	82	3	93	44	0	1	54	1.09
49009796--49009918	24	5.1	24	84	7	169	26	21	21	29	1.99
49009796--49009918	48	2.6	48	93	0	201	26	21	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49016133--49016545	210	2.0	210	89	0	639	31	20	16	31	1.95
49019910--49019985	37	2.1	37	97	0	143	46	9	21	23	1.80
49020392--49020447	29	2.0	28	82	10	69	39	12	23	25	1.89
49020819--49020858	16	2.6	15	82	17	55	60	0	5	35	1.19
49029702--49029781	41	1.9	42	84	2	108	41	8	2	47	1.48
49031930--49031975	25	1.9	24	86	8	67	34	6	6	52	1.53
49033570--49033612	14	3.1	14	74	12	52	2	30	0	67	1.03
49035650--49036062	210	2.0	210	87	1	605	31	20	16	31	1.95
49037128--49037195	29	2.3	31	78	17	81	54	8	10	26	1.63
49040443--49040681	29	8.1	29	73	17	181	32	2	29	35	1.73
49040420--49040671	59	4.3	57	81	7	267	34	2	27	34	1.72
49040415--49040670	118	2.2	118	83	7	326	34	3	28	34	1.73
49042418--49042445	14	2.0	14	100	0	56	57	0	7	35	1.26
49042410--49042463	11	5.1	11	72	17	51	57	0	3	38	1.17
49042829--49043359	75	7.0	75	89	4	782	33	17	16	32	1.93
49042910--49043188	37	7.4	38	66	21	151	35	17	15	31	1.92
49052642--49052815	86	2.0	86	100	0	348	33	27	19	19	1.96
49055568--49055763	59	3.4	59	92	1	315	32	2	30	34	1.71
49055568--49055775	29	7.1	28	71	22	137	31	2	31	34	1.73
49055720--49055822	29	3.6	28	78	8	100	30	6	27	35	1.83
49055737--49055832	29	3.3	30	78	11	76	23	8	30	37	1.84
49057567--49057635	6	11.7	6	73	14	63	57	0	2	39	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49057567--49057635	17	4.2	17	87	10	99	57	0	2	39	1.13
49057575--49057602	14	2.0	14	100	0	56	57	0	7	35	1.26
49057567--49057637	11	6.1	11	76	15	54	57	0	2	39	1.13
49057567--49057657	28	3.1	28	81	7	85	54	4	2	38	1.32
49059910--49059957	24	2.0	24	100	0	96	33	16	16	33	1.92
49070153--49070178	13	2.0	13	100	0	52	30	0	0	69	0.89
49070438--49070511	34	2.2	34	83	9	89	40	1	9	48	1.44
49071280--49071311	15	2.1	15	94	0	55	65	0	3	31	1.08
49071404--49071457	18	3.0	17	70	15	54	29	9	5	55	1.54
49072215--49072256	18	2.3	18	91	0	66	64	0	2	33	1.07
49076614--49077050	213	2.1	213	89	0	669	29	15	24	31	1.95
49087034--49087656	210	3.0	209	91	1	1014	34	16	19	30	1.94
49088769--49088845	36	2.1	36	100	0	154	32	10	31	25	1.90
49095715--49096746	210	4.9	210	95	0	1775	29	17	21	32	1.96
49095715--49096746	419	2.5	420	94	1	1793	29	17	21	32	1.96
49099005--49099750	210	3.6	210	89	1	1172	30	16	20	31	1.95
49102974--49103013	16	2.3	19	83	12	50	27	2	2	67	1.16
49105279--49105381	54	1.9	54	91	0	170	28	25	20	26	1.99
49107425--49107478	25	2.2	24	83	6	65	68	11	11	9	1.40
49112129--49112184	28	2.0	28	89	0	85	32	19	21	26	1.97
49115384--49115623	42	5.8	41	82	2	284	23	24	29	22	1.99
49115361--49115636	83	3.4	81	81	5	295	26	23	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49115363--49115636	42	6.7	41	80	4	275	25	23	28	21	1.99
49118221--49118245	13	1.9	13	100	0	50	52	0	0	48	1.00
49118232--49119350	18	65.3	18	65	19	291	47	2	4	46	1.34
49118288--49118563	112	2.5	112	98	0	527	45	3	3	46	1.40
49118572--49118690	8	14.8	8	70	17	59	49	0	1	48	1.11
49118399--49119323	306	3.0	306	90	5	1351	47	2	4	45	1.34
49118228--49119323	354	3.1	353	89	5	1516	47	2	4	45	1.34
49118560--49119352	209	3.9	209	80	10	752	47	1	4	46	1.32
49124872--49125029	66	2.4	66	80	6	196	44	15	23	15	1.85
49125010--49125061	21	2.5	21	74	0	59	40	15	40	3	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182