genome.fa.s9.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  110  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35740948--35741070	60	2.0	61	82	6	149	56	3	0	39	1.15
35742225--35742249	13	1.9	13	100	0	50	56	20	0	24	1.43
35747091--35747142	26	2.0	26	100	0	104	34	23	19	23	1.96
35748971--35749021	17	3.0	17	71	21	52	43	0	3	52	1.19
35749012--35749060	19	2.5	20	83	3	64	53	0	2	44	1.12
35750114--35750152	20	2.0	20	94	0	69	48	12	7	30	1.69
35756631--35756672	21	2.0	22	85	4	59	9	21	4	64	1.42
35758089--35758140	20	2.6	20	84	6	61	38	7	7	46	1.61
35760316--35760380	19	3.2	20	78	6	69	47	13	4	33	1.64
35762369--35762499	25	5.2	25	86	3	147	24	16	24	35	1.95
35775045--35775077	16	2.1	16	94	0	57	30	27	12	30	1.92
35780478--35780522	17	2.8	16	81	18	58	2	20	0	77	0.87
35781080--35781133	17	3.2	16	80	12	56	53	18	12	14	1.72
35781606--35781644	21	2.0	18	85	14	51	7	38	0	53	1.30
35803488--35803538	18	2.9	17	82	8	66	15	13	29	41	1.86
35808231--35809411	589	2.0	589	97	0	2245	35	10	18	35	1.85
35829177--35829216	21	2.0	21	90	5	64	45	15	15	25	1.84
35830620--35830662	12	3.6	12	77	0	50	0	32	2	65	1.06
35834520--35834560	20	2.0	20	85	0	55	31	9	29	29	1.89
35834944--35835011	35	2.0	32	83	8	82	39	22	5	32	1.78
35837971--35838019	6	8.0	6	84	8	55	0	24	0	75	0.80
35837971--35838018	13	3.7	14	81	13	59	0	22	0	77	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35837976--35838018	20	2.2	19	91	4	68	0	25	0	74	0.82
35837972--35838027	25	2.2	26	81	12	62	5	23	0	71	1.06
35838361--35838422	24	2.6	23	89	5	79	38	22	6	32	1.80
35843798--35843828	15	2.1	14	94	5	53	19	29	6	45	1.75
35848526--35848595	20	3.5	20	78	3	61	32	11	27	28	1.91
35848781--35848820	20	2.0	20	90	0	62	25	7	35	32	1.84
35851165--35851226	26	2.4	26	100	0	124	40	12	11	35	1.80
35857719--35857774	29	2.0	28	85	3	76	55	19	5	19	1.62
35859110--35859137	10	2.8	10	100	0	56	39	28	0	32	1.57
35860133--35860180	12	4.0	12	75	0	51	18	22	14	43	1.87
35860134--35860188	24	2.3	24	81	3	58	20	20	16	43	1.88
35865833--35867672	282	6.6	282	93	3	3043	33	18	22	25	1.97
35865896--35867672	546	3.2	551	93	2	2830	33	18	22	25	1.97
35867527--35867810	138	2.1	138	91	0	451	33	15	24	26	1.95
35870313--35870353	18	2.2	19	91	4	66	29	2	4	63	1.28
35874575--35874653	31	2.6	31	85	2	106	44	10	16	29	1.80
35879918--35879968	21	2.4	21	78	18	61	29	27	15	27	1.96
35880123--35880162	21	1.9	21	89	0	62	32	20	17	30	1.95
35883169--35883232	29	2.2	29	88	0	92	42	15	9	32	1.79
35883169--35883245	29	2.6	28	83	6	82	44	15	7	32	1.75
35889936--35889980	20	2.2	20	84	0	54	60	11	11	17	1.59
35890345--35890392	17	2.6	19	78	15	57	43	2	4	50	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35890403--35890446	21	2.1	21	83	8	54	50	2	4	43	1.35
35898029--35898080	24	2.2	24	86	6	70	67	5	1	25	1.23
35898509--35898583	31	2.4	31	90	0	123	57	1	0	41	1.07
35899118--35899179	20	3.1	20	74	6	63	61	3	4	30	1.33
35899125--35899179	10	5.5	10	74	8	58	61	1	3	32	1.24
35899127--35899190	29	2.2	29	83	5	76	60	3	4	31	1.32
35899363--35899433	19	3.8	18	75	18	65	32	7	2	57	1.40
35899446--35899532	10	8.8	10	68	12	54	37	1	3	57	1.23
35901567--35901614	22	2.2	21	77	3	51	50	0	14	35	1.44
35901696--35901723	3	9.3	3	100	0	56	0	32	0	67	0.91
35902422--35902698	41	6.7	41	83	4	299	37	9	25	27	1.86
35902424--35902698	124	2.2	126	85	5	364	37	9	25	27	1.87
35903259--35903300	21	2.0	21	90	0	66	26	9	23	40	1.85
35908772--35908819	22	2.2	21	77	3	51	50	0	14	35	1.44
35908901--35908942	3	14.3	3	95	5	77	0	33	0	66	0.92
35909686--35909910	41	5.4	41	87	1	297	36	8	26	28	1.86
35909686--35909910	124	1.8	124	90	1	362	36	8	26	28	1.86
35921560--35921621	24	2.6	24	86	0	79	32	25	4	37	1.77
35924974--35925058	35	2.5	35	74	1	91	35	7	12	44	1.70
35926080--35926163	17	4.9	17	71	5	71	29	7	17	45	1.75
35927057--35927111	28	1.9	29	96	3	103	40	16	14	29	1.88
35927756--35927934	53	3.4	53	84	2	200	30	32	15	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35927905--35928010	43	2.5	42	80	4	124	33	33	11	20	1.88
35927927--35928022	45	2.2	43	83	7	113	32	34	11	21	1.89
35927921--35928024	43	2.4	44	78	10	115	31	35	11	21	1.89
35930474--35930513	17	2.3	18	83	12	57	55	12	15	17	1.70
35938116--35938181	9	7.0	9	74	8	60	9	6	9	75	1.18
35938116--35938181	28	2.3	28	94	2	114	9	6	9	75	1.18
35939533--35939585	15	3.5	15	75	10	54	18	20	30	30	1.97
35944151--35944203	18	2.9	18	80	0	70	22	13	24	39	1.90
35944134--35944203	36	1.9	36	82	5	88	22	15	24	37	1.93
35944369--35944427	28	2.1	28	100	0	118	35	18	13	32	1.90
35953527--35953569	15	2.9	15	89	3	61	0	34	0	65	0.93
35954594--35954650	29	2.0	29	96	0	105	22	33	17	26	1.96
35991479--35991524	24	1.9	24	86	0	65	28	36	19	15	1.92
35991573--35991630	7	8.4	7	84	3	73	18	24	24	32	1.97
35991560--35991640	21	3.9	21	76	9	76	24	22	19	33	1.97
35991581--35991640	14	4.4	13	76	14	50	25	23	20	31	1.98
35992688--35992729	5	8.6	5	85	15	61	21	0	0	78	0.75
35992688--35992727	11	3.5	11	84	15	55	22	0	0	77	0.77
35999653--35999701	17	2.9	17	78	0	53	51	8	16	24	1.71
36003057--36003091	18	1.9	18	88	0	52	57	2	0	40	1.14
36011656--36011717	32	1.9	32	86	0	88	37	9	19	33	1.84
36011867--36011920	20	2.7	20	79	0	54	29	33	9	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36026607--36026650	21	2.1	21	87	8	63	13	4	34	47	1.63
36033693--36033731	20	2.0	19	95	5	69	38	25	20	15	1.92
36035407--36035713	153	2.0	153	96	0	560	31	16	21	30	1.95
36038418--36038467	12	4.2	12	80	10	57	2	34	0	64	1.05
36047678--36047793	5	22.8	5	70	16	69	34	18	4	43	1.69
36047690--36047747	17	3.4	18	71	20	52	32	18	5	43	1.73
36047721--36047793	22	3.2	22	79	7	92	35	17	1	45	1.58
36055431--36055498	26	2.7	26	82	11	79	30	23	19	26	1.98
36056555--36056632	17	4.5	17	80	1	75	48	10	19	21	1.78
36067032--36067072	21	2.0	21	90	0	64	63	12	24	0	1.28
36095225--36096162	468	2.0	467	94	0	1662	30	18	18	32	1.95
36097676--36097741	35	2.0	33	82	11	82	31	3	15	50	1.59
36100434--36100483	3	16.7	3	95	0	91	30	0	2	68	1.01
36103837--36103866	15	2.0	15	93	0	51	26	3	13	56	1.52
36110650--36110679	15	2.0	15	93	0	51	26	3	13	56	1.52
36110671--36110695	13	1.9	13	100	0	50	40	4	8	48	1.51
36115735--36115787	22	2.4	22	77	0	61	54	1	1	41	1.22
36118492--36118732	52	4.6	53	81	3	247	35	23	14	26	1.93
36118492--36118731	104	2.3	104	82	3	295	35	23	14	26	1.93
36125389--36125956	215	2.6	211	81	7	623	33	12	13	40	1.82
36131878--36132056	52	3.4	52	77	3	189	26	16	22	34	1.95
36139843--36140435	42	14.7	41	73	9	425	29	27	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36139842--36140435	81	7.4	81	81	2	644	29	28	16	26	1.97
36139842--36140435	241	2.5	242	85	1	771	29	28	16	26	1.97
36141690--36142002	158	2.0	158	88	2	468	23	24	23	28	1.99
36144649--36144687	6	6.5	6	87	0	51	23	30	0	46	1.53
36146418--36146503	42	2.0	42	81	0	100	29	26	13	30	1.95
36151948--36152237	158	1.8	158	87	1	429	25	22	22	30	1.99
36153389--36153433	3	14.7	3	86	4	63	35	4	0	60	1.17
36153963--36154344	144	2.6	145	84	6	481	42	2	11	43	1.54
36155203--36155670	230	2.0	233	89	3	708	36	7	15	41	1.75
36158866--36159407	221	2.5	220	81	3	641	34	10	12	41	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182