genome.fa.s9.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  114  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37037817--37037850	10	3.3	10	88	8	50	17	8	5	67	1.37
37046540--37046581	17	2.5	17	80	7	50	16	19	9	54	1.69
37057747--37057798	21	2.5	21	78	6	61	25	11	28	34	1.91
37063674--37063704	3	10.3	3	92	0	53	64	0	3	32	1.09
37071367--37071557	23	8.5	23	67	16	96	41	20	25	12	1.87
37071481--37071557	23	3.2	25	79	17	101	40	23	25	10	1.86
37076280--37076336	29	2.0	27	83	6	69	28	10	14	47	1.76
37077929--37077980	23	2.3	20	76	20	50	46	3	1	48	1.31
37078836--37078872	18	2.1	18	94	0	65	40	0	2	56	1.13
37078799--37078882	43	2.0	41	86	4	114	42	5	3	47	1.45
37085226--37085280	24	2.2	24	78	12	58	27	0	3	69	1.05
37087596--37087638	18	2.4	18	88	7	61	53	0	0	46	1.00
37088227--37088272	11	3.9	12	77	13	51	63	0	0	36	0.95
37088241--37088272	13	2.6	13	90	9	50	65	0	0	34	0.93
37090549--37090588	15	2.7	15	92	3	64	47	0	0	52	1.00
37090635--37090700	23	2.9	23	82	15	91	0	56	0	43	0.99
37090635--37090696	12	5.4	12	70	22	53	0	56	0	43	0.99
37091707--37091745	20	1.9	21	89	5	62	53	0	0	46	1.00
37091712--37091775	29	2.1	30	82	5	76	54	1	0	43	1.09
37092923--37093013	6	15.7	6	72	11	73	46	3	2	48	1.31
37092944--37093011	17	3.9	17	79	9	75	42	2	2	51	1.32
37092909--37092992	41	2.0	42	86	2	116	40	3	3	52	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37092923--37093015	23	4.0	24	76	6	66	46	3	2	48	1.30
37093837--37093872	17	2.1	18	89	5	56	63	0	0	36	0.94
37094884--37095189	59	5.2	58	82	4	267	36	26	1	35	1.68
37094930--37095205	59	4.7	57	85	4	284	36	25	1	36	1.67
37094884--37095195	30	10.6	28	76	9	239	37	26	1	34	1.68
37094930--37095207	117	2.4	118	83	6	341	36	25	2	35	1.68
37094988--37095207	59	3.8	59	88	3	286	37	26	1	34	1.67
37095278--37095341	29	2.2	29	94	0	110	29	32	12	25	1.92
37097672--37097746	29	2.5	30	95	2	134	45	10	2	41	1.53
37101603--37101681	28	2.8	28	81	7	81	22	22	25	29	1.99
37101718--37101842	27	4.7	27	76	4	83	25	16	22	36	1.94
37101712--37101847	54	2.5	54	80	2	139	25	16	21	37	1.93
37104002--37104081	29	2.7	30	77	11	94	47	0	18	33	1.49
37104119--37104323	29	6.9	30	79	13	212	38	3	23	35	1.72
37104087--37104319	59	3.9	58	80	8	186	38	4	22	34	1.75
37105443--37105483	21	2.0	20	90	4	64	41	7	0	51	1.30
37106297--37106351	6	9.7	6	78	11	62	54	3	0	41	1.18
37106296--37106351	11	5.0	11	82	8	69	55	3	0	41	1.17
37106296--37106353	5	10.6	5	80	14	53	53	3	0	43	1.17
37106278--37106366	17	5.2	17	82	8	92	51	4	1	42	1.29
37106968--37109387	92	26.5	91	92	2	3781	33	19	15	31	1.93
37109511--37109951	50	8.8	50	70	10	285	12	24	22	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37109511--37109753	101	2.4	99	83	2	308	12	26	22	38	1.90
37109629--37109951	151	2.1	151	90	0	502	11	23	22	41	1.87
37109705--37109948	101	2.4	101	77	9	257	10	22	24	42	1.85
37111200--37111251	17	3.2	16	84	13	70	0	17	0	82	0.66
37111201--37111271	10	6.7	10	77	9	61	2	14	1	81	0.87
37111208--37111246	5	7.8	5	91	8	62	0	15	0	84	0.62
37116832--37117029	29	6.8	29	83	4	168	35	6	24	33	1.82
37116862--37117065	30	6.9	30	81	4	186	34	4	25	35	1.76
37116831--37117065	59	4.0	58	77	10	192	34	5	25	34	1.79
37118169--37118221	3	17.3	3	80	3	52	35	1	1	60	1.19
37118746--37118835	11	8.0	11	80	11	103	56	2	0	41	1.11
37118731--37118832	17	5.9	17	89	3	134	56	2	0	40	1.14
37118750--37118850	17	6.0	16	85	6	103	54	2	0	41	1.22
37118729--37118856	29	4.5	27	77	16	116	54	3	0	41	1.21
37118731--37118849	34	3.5	33	84	7	132	55	3	0	40	1.22
37126436--37126469	13	2.6	13	95	0	59	82	0	17	0	0.67
37128483--37128563	35	2.3	35	80	4	92	72	4	2	19	1.14
37128511--37128574	21	2.9	23	77	11	64	73	6	1	18	1.12
37128511--37128574	22	2.9	22	76	15	62	73	6	1	18	1.12
37128705--37128744	5	7.8	5	88	5	62	77	2	2	17	0.99
37128699--37128744	16	2.9	16	80	3	58	78	4	2	15	1.01
37128844--37128885	23	2.0	22	86	13	61	71	0	11	16	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37129066--37129115	24	2.1	24	82	14	59	34	16	0	50	1.45
37129863--37129913	19	2.6	19	84	3	57	19	1	13	64	1.37
37130450--37130484	16	2.1	17	89	5	54	42	11	0	45	1.40
37133218--37133382	54	3.1	54	100	0	330	40	18	9	32	1.82
37144551--37144621	22	3.4	22	67	11	67	32	1	4	61	1.23
37144569--37144635	19	3.4	19	68	11	62	32	2	5	58	1.38
37144560--37144643	41	2.0	41	100	0	168	32	2	7	58	1.38
37144659--37144834	90	1.9	90	81	4	210	46	14	6	31	1.71
37146338--37146663	52	6.1	52	76	10	291	38	16	23	21	1.93
37146345--37146664	54	5.9	54	76	10	305	38	16	23	21	1.92
37153638--37153874	82	2.8	84	90	3	381	23	4	24	47	1.70
37155090--37155168	24	3.3	24	78	3	88	15	7	40	36	1.75
37155499--37156806	656	2.0	656	87	2	1912	29	13	19	37	1.90
37157312--37157359	6	8.2	6	77	13	55	43	2	4	50	1.33
37159116--37159262	30	5.0	30	72	13	117	32	24	4	38	1.74
37159116--37159216	30	3.4	30	81	9	125	32	27	3	35	1.76
37159131--37159262	57	2.3	57	84	5	158	32	23	3	40	1.73
37159245--37159404	58	2.8	58	74	9	155	32	20	6	40	1.79
37161996--37162133	46	3.0	46	78	2	152	26	15	21	37	1.92
37163387--37163411	11	2.3	11	100	0	50	0	44	0	56	0.99
37166157--37166190	17	2.1	16	89	10	52	47	23	8	20	1.78
37166376--37166713	173	1.9	175	90	1	536	43	21	9	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37170412--37170552	70	2.0	70	88	2	212	39	16	17	27	1.90
37191572--37191667	41	2.4	40	81	6	106	41	9	22	26	1.84
37192242--37192296	21	2.4	24	88	8	80	16	10	32	40	1.83
37198368--37198393	2	13.0	2	100	0	52	50	0	0	50	1.00
37199575--37199603	13	2.2	13	100	0	58	20	6	0	72	1.07
37199642--37199679	3	12.7	3	100	0	76	68	0	0	31	0.90
37202232--37202274	17	2.5	17	88	3	59	53	2	23	20	1.57
37205045--37205086	21	2.0	21	81	9	50	38	0	2	59	1.10
37207171--37207199	14	2.1	14	100	0	58	41	6	37	13	1.72
37216158--37216214	24	2.4	24	81	0	69	43	19	24	12	1.85
37230309--37230343	13	2.7	13	95	0	61	40	11	2	45	1.55
37234931--37234974	19	2.4	18	81	7	52	47	2	15	34	1.58
37235227--37235482	30	8.6	30	72	10	134	33	7	21	37	1.81
37235264--37235467	59	3.5	60	77	6	202	35	7	21	35	1.82
37237308--37237421	47	2.4	48	86	1	158	21	24	12	41	1.88
37237462--37237555	50	1.9	48	84	4	125	23	23	12	40	1.89
37237238--37237552	173	1.8	170	82	4	409	23	20	14	40	1.90
37237585--37237678	48	2.0	48	86	0	134	21	21	14	42	1.88
37237339--37238367	123	8.4	123	82	4	1099	22	20	15	40	1.90
37237710--37237791	43	1.9	43	84	0	110	18	24	13	43	1.85
37237339--37238367	247	4.2	246	82	5	1114	22	20	15	40	1.90
37238441--37238618	46	4.0	46	82	6	197	26	15	24	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37238863--37239103	98	2.5	98	84	2	297	21	26	15	36	1.93
37238867--37239154	49	5.9	49	78	4	260	22	25	15	37	1.93
37239976--37240044	33	2.1	32	81	7	77	1	20	5	72	1.13
37239990--37240037	20	2.4	20	82	6	53	0	18	4	77	0.93
37240919--37240945	6	4.5	6	100	0	54	0	0	14	85	0.61
37240990--37241024	11	3.1	11	87	4	52	0	17	0	82	0.66
37244973--37245014	15	2.8	15	75	13	50	76	11	0	11	1.03
37245210--37245427	29	7.4	30	75	9	139	31	6	23	37	1.81
37245210--37245363	58	2.7	58	83	8	188	31	4	24	39	1.75
37245353--37245422	30	2.3	30	85	0	86	32	11	22	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182