genome.fa.s9.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  41  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15291324--15291420	43	2.3	42	81	1	113	36	24	14	24	1.93
15295761--15296030	41	6.6	41	87	2	337	20	30	20	28	1.97
15295759--15296030	123	2.2	123	87	0	393	20	30	20	29	1.98
15296010--15296111	40	2.5	40	96	0	186	20	26	15	37	1.93
15296560--15296602	17	2.5	17	85	7	61	55	0	0	44	0.99
15299010--15299090	35	2.3	35	95	0	144	32	27	22	18	1.97
15299647--15299693	4	11.8	4	100	0	94	25	0	23	51	1.49
15301061--15301095	2	17.5	2	100	0	70	48	0	0	51	1.00
15309636--15309677	22	2.0	21	90	9	68	21	16	38	23	1.93
15309664--15309691	14	2.0	14	100	0	56	14	21	42	21	1.88
15310397--15311182	49	16.1	49	73	5	505	18	22	18	40	1.92
15310384--15311069	147	4.7	146	77	7	572	18	22	18	40	1.91
15325759--15325793	18	2.0	17	94	5	61	42	0	0	57	0.99
15326750--15327245	247	2.0	247	100	0	992	33	20	17	28	1.96
15327696--15328524	234	3.6	234	98	0	1610	21	20	17	39	1.92
15331725--15331753	10	2.7	11	89	10	51	55	20	6	17	1.65
15332087--15332177	38	2.4	38	82	12	98	42	4	0	52	1.21
15332283--15332346	15	4.1	15	75	16	67	53	1	0	45	1.10
15332741--15332790	19	2.6	19	83	3	55	56	4	0	40	1.18
15332738--15332786	21	2.3	21	80	16	57	53	6	0	40	1.26
15333171--15333250	14	5.3	15	73	18	67	43	0	2	53	1.14
15333167--15333230	15	4.1	15	75	16	67	45	0	1	53	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15333336--15333426	38	2.4	38	82	12	98	52	0	4	42	1.21
15333688--15333764	31	2.5	31	82	4	102	25	18	11	44	1.84
15333718--15333853	60	2.3	60	83	3	159	25	15	11	47	1.80
15333741--15333853	60	1.9	60	87	3	165	25	14	9	50	1.73
15336022--15336056	17	2.2	17	90	10	56	28	11	0	60	1.32
15337419--15337447	10	2.7	11	89	10	51	55	20	6	17	1.65
15339872--15340089	29	7.5	30	69	21	133	38	3	27	31	1.74
15339865--15340118	58	4.4	59	91	2	397	37	4	27	30	1.76
15339902--15340118	29	7.5	28	70	15	136	38	3	26	31	1.74
15340276--15340588	162	1.9	162	88	3	470	45	13	15	25	1.83
15340617--15340681	33	2.0	32	84	6	85	56	9	16	16	1.65
15342126--15342169	20	2.2	20	95	0	79	22	15	43	18	1.88
15342392--15342467	11	6.8	11	75	8	73	51	1	3	43	1.28
15342379--15342467	17	5.3	16	80	9	79	51	2	3	42	1.30
15342806--15343488	69	9.7	69	84	6	888	30	19	15	34	1.93
15342742--15343488	137	5.3	138	85	5	899	30	19	15	34	1.93
15342844--15343306	31	13.4	32	63	20	125	30	18	15	35	1.93
15342742--15343510	145	5.4	142	84	6	858	30	19	16	33	1.94
15355487--15355796	29	10.7	28	67	13	153	37	4	27	30	1.77
15355487--15355796	115	2.7	117	92	2	534	37	4	27	30	1.77
15355485--15355796	58	5.4	58	91	1	500	36	4	27	30	1.78
15357765--15357808	20	2.2	20	95	0	79	22	15	43	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15358015--15358087	6	12.8	6	68	21	50	50	2	2	43	1.30
15358032--15358093	11	5.5	11	78	5	70	51	1	4	41	1.33
15358057--15358099	22	2.0	22	81	9	52	55	0	6	37	1.27
15362387--15362415	10	2.7	11	89	10	51	55	20	6	17	1.65
15364110--15364155	20	2.3	20	78	14	58	47	2	2	47	1.26
15366569--15366598	16	1.9	16	93	6	53	73	0	0	26	0.84
15366943--15367039	17	5.8	17	86	4	117	45	1	3	50	1.24
15366935--15366959	12	2.1	12	100	0	50	40	8	0	52	1.31
15366958--15367043	11	7.8	11	73	10	68	43	0	3	53	1.18
15366951--15367048	6	17.3	6	70	18	68	43	0	4	52	1.20
15366951--15367079	17	7.6	17	79	13	115	45	0	3	50	1.20
15368951--15369208	30	8.6	30	86	5	308	40	17	3	39	1.65
15368951--15369235	90	3.2	88	87	5	367	39	17	3	39	1.66
15368951--15369253	30	10.1	30	82	8	273	39	18	3	38	1.68
15376663--15376708	24	2.0	23	83	12	58	45	15	0	39	1.46
15381224--15381378	40	3.6	40	70	23	125	34	13	14	37	1.86
15381179--15381461	92	3.1	92	95	0	503	34	13	15	36	1.86
15381720--15381744	12	2.1	12	100	0	50	40	8	0	52	1.31
15381736--15381847	17	6.7	16	78	12	109	45	0	4	50	1.22
15381760--15381811	11	4.8	11	79	13	63	42	0	1	55	1.10
15381736--15381816	6	14.3	6	71	20	59	43	0	4	51	1.23
15383690--15383866	30	5.9	29	83	7	160	38	24	2	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15383690--15383830	60	2.3	59	85	4	183	41	21	2	34	1.68
15383819--15383952	58	2.3	59	82	5	157	33	29	4	32	1.78
15391403--15391498	30	3.1	31	85	10	117	36	2	29	32	1.69
15391403--15391587	29	6.2	29	79	9	151	36	2	27	33	1.71
15391403--15391571	61	2.8	58	77	11	164	36	1	27	34	1.68
15391548--15391610	30	2.1	29	85	2	81	42	6	23	26	1.78
15393130--15393163	17	2.0	17	100	0	68	58	0	0	41	0.98
15393558--15393592	17	2.1	17	89	5	54	71	0	0	28	0.86
15394374--15394403	15	1.9	16	93	6	53	53	0	6	40	1.27
15402504--15402531	2	14.0	2	100	0	56	50	0	0	50	1.00
15403089--15403132	20	2.3	20	88	11	67	31	0	2	65	1.05
15403101--15403172	29	2.4	29	82	13	85	33	1	1	63	1.11
15403064--15403170	47	2.3	46	79	16	132	34	0	0	63	1.07
15404286--15404450	68	2.4	68	97	0	312	42	12	10	33	1.78
15406369--15406658	142	2.0	143	90	5	453	55	5	3	35	1.41
15409733--15409774	6	7.2	6	83	5	59	52	2	0	45	1.13
15409731--15409774	23	1.9	23	95	0	79	54	2	0	43	1.12
15409739--15409771	17	1.9	17	93	0	57	57	3	0	39	1.14
15410344--15410512	39	4.3	38	72	4	115	24	19	31	23	1.98
15410362--15410554	78	2.5	78	78	5	194	24	20	31	23	1.98
15411102--15411177	21	3.3	21	70	22	64	47	17	22	13	1.81
15411101--15411231	46	2.8	46	84	9	151	45	19	22	12	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15411115--15411248	71	1.9	70	82	13	168	45	18	22	13	1.84
15411101--15411251	23	6.5	23	75	12	94	45	19	22	12	1.83
15411101--15411251	48	3.2	46	82	9	139	45	19	22	12	1.83
15415273--15415569	39	7.6	39	72	7	172	27	21	27	22	1.99
15415248--15415578	78	4.2	76	75	8	256	27	19	29	23	1.98
15415248--15415578	156	2.1	156	81	4	373	27	19	29	23	1.98
15415926--15416021	49	2.0	49	87	4	140	20	31	13	34	1.92
15415947--15416336	50	8.1	48	70	12	194	20	31	14	33	1.93
15417252--15417288	6	6.5	6	87	6	51	0	18	0	81	0.70
15417252--15417291	11	3.6	11	80	12	55	0	20	0	80	0.72
15423604--15423640	18	2.1	18	89	0	56	48	0	27	24	1.51
15428663--15428699	18	2.1	18	89	0	56	48	0	27	24	1.51
15433104--15433163	23	2.8	22	80	17	72	61	1	1	35	1.16
15432964--15433254	143	2.0	144	93	3	500	54	5	3	36	1.40
15439860--15439889	11	2.8	11	95	5	53	56	0	0	43	0.99
15439872--15439911	17	2.4	17	86	0	62	55	2	0	42	1.13
15439860--15439892	10	3.2	10	91	8	57	60	0	0	39	0.97
15440456--15440480	6	4.2	6	100	0	50	48	0	0	52	1.00
15441240--15441304	31	2.1	31	82	5	78	56	6	7	29	1.51
15441644--15441694	23	2.3	23	89	3	77	31	25	17	25	1.97
15442285--15442340	16	3.5	16	75	4	51	55	14	3	26	1.55
15443676--15443727	25	2.1	25	85	7	70	63	3	3	28	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15444622--15444680	30	2.0	30	83	6	75	42	3	5	49	1.41
15448964--15449009	24	1.9	24	86	0	65	47	6	15	30	1.70
15449130--15449209	31	2.6	31	82	4	90	48	11	17	22	1.78
15449154--15449216	31	2.0	31	93	0	108	44	9	20	25	1.82
15450143--15450174	15	2.1	16	94	5	57	15	12	0	71	1.14
15453322--15453409	31	2.8	31	85	0	113	43	7	20	28	1.80
15463501--15463540	21	1.9	21	84	0	53	42	5	10	42	1.60
15466784--15466843	29	2.1	29	90	3	95	18	10	10	61	1.54
15467416--15467484	35	1.9	36	85	2	95	53	5	36	4	1.45
15474353--15474385	17	2.0	16	94	5	57	54	3	0	42	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182