genome.fa.s9.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  111  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36161227--36161264	17	2.2	17	90	0	58	39	2	2	55	1.28
36162827--36162868	22	2.0	22	86	13	61	73	11	0	14	1.09
36176505--36176989	49	9.9	49	70	8	326	39	19	23	17	1.92
36176501--36176969	98	4.8	98	86	1	582	39	19	23	17	1.92
36182349--36182389	18	2.3	18	95	0	73	26	36	19	17	1.94
36183413--36183592	44	4.1	44	90	0	252	31	10	18	39	1.85
36183433--36183592	22	7.3	22	62	8	74	31	9	18	40	1.82
36183433--36183610	44	4.0	44	91	0	239	34	8	17	39	1.81
36184330--36184423	47	2.0	47	100	0	188	29	19	19	31	1.96
36199287--36199329	18	2.3	19	84	4	52	44	0	27	27	1.55
36200793--36200822	15	2.0	15	93	0	51	63	0	0	36	0.95
36201708--36201749	20	2.1	20	86	0	57	76	14	2	7	1.10
36205970--36206021	21	2.5	21	96	0	95	23	26	17	32	1.96
36207570--36207614	20	2.2	20	84	7	56	31	15	2	51	1.56
36211210--36211248	21	1.9	20	94	5	69	84	2	7	5	0.84
36211674--36212063	42	9.0	41	82	11	342	20	19	24	36	1.95
36211674--36212065	84	4.5	84	82	8	437	20	19	24	36	1.95
36211815--36211840	11	2.4	11	100	0	52	19	19	0	61	1.35
36211773--36211879	53	2.0	53	92	0	178	19	16	19	43	1.88
36211676--36212005	179	1.8	179	89	1	518	19	19	24	36	1.95
36211826--36212063	126	1.9	126	91	0	395	19	18	24	36	1.94
36212874--36213527	147	4.4	149	87	5	872	42	2	9	44	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36215188--36215235	21	2.4	21	86	6	64	37	0	2	60	1.09
36219065--36219106	18	2.4	18	88	4	59	57	11	11	19	1.65
36232040--36232073	14	2.5	14	90	4	52	82	0	17	0	0.67
36241484--36241561	18	4.3	17	75	13	59	55	15	11	17	1.69
36241506--36241561	18	3.0	18	82	10	60	55	14	12	17	1.69
36241979--36242011	12	2.8	12	95	0	57	0	45	0	54	0.99
36259000--36259055	22	2.5	22	88	0	76	32	25	16	26	1.96
36262091--36262127	19	1.9	19	88	0	56	27	8	21	43	1.80
36262113--36262227	59	1.9	59	91	0	185	29	12	18	40	1.87
36262197--36262267	24	3.0	24	62	22	60	30	7	21	40	1.79
36262172--36262273	46	2.2	46	92	0	168	30	9	19	40	1.84
36277272--36277390	34	3.5	34	85	0	175	15	12	34	36	1.86
36280117--36280149	16	2.1	16	94	0	57	33	18	3	45	1.65
36288705--36288761	5	10.8	5	81	10	69	0	24	0	75	0.80
36288700--36288752	16	3.4	16	79	10	56	0	24	0	75	0.80
36288696--36288763	21	3.2	21	82	13	86	0	27	0	72	0.85
36288700--36288761	27	2.4	26	83	5	81	0	25	0	74	0.82
36288696--36288768	15	4.9	15	76	15	53	0	26	1	72	0.93
36290529--36290576	24	2.0	25	87	4	71	72	4	8	14	1.23
36294883--36294931	18	2.7	18	77	0	62	22	14	18	44	1.85
36296142--36296175	18	1.9	17	88	5	50	55	8	11	23	1.63
36302780--36302930	30	5.1	30	80	8	125	33	8	24	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36305055--36305146	48	1.9	48	86	4	132	21	23	15	39	1.92
36304618--36305662	124	8.5	124	86	2	1274	21	21	17	38	1.93
36305179--36305272	48	2.0	48	93	0	161	23	23	14	38	1.92
36305425--36305519	48	2.0	48	89	0	145	25	22	12	40	1.89
36305484--36305882	220	1.8	221	87	2	606	20	20	18	40	1.92
36305939--36306525	45	13.3	44	75	8	396	28	18	23	29	1.98
36305939--36306553	86	7.0	87	75	9	333	28	17	24	29	1.97
36306049--36306505	131	3.5	132	79	5	432	28	17	24	29	1.97
36306800--36307090	49	5.9	48	75	10	207	20	26	15	36	1.93
36306796--36307049	98	2.6	98	83	5	300	21	27	14	37	1.92
36306797--36307094	98	3.0	99	81	6	259	20	26	15	37	1.92
36307947--36307992	23	2.0	23	91	8	76	0	26	0	73	0.83
36310726--36310764	20	2.0	20	89	0	60	53	20	10	15	1.70
36310752--36310799	21	2.3	21	85	0	60	35	25	16	22	1.95
36310848--36310894	21	2.2	21	88	0	67	21	2	36	40	1.65
36312314--36312358	9	4.6	9	80	20	54	22	2	13	62	1.42
36317749--36317880	66	2.0	66	91	2	212	40	13	16	29	1.87
36321396--36321452	27	2.2	25	84	6	69	59	0	33	7	1.24
36321851--36321906	18	3.0	18	79	12	60	17	12	14	55	1.69
36330014--36330061	24	2.0	24	84	12	62	16	8	4	70	1.27
36343164--36343214	15	3.3	15	75	21	52	41	0	1	56	1.10
36343160--36343202	18	2.2	20	88	8	63	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36351142--36351177	19	2.0	18	89	10	56	16	11	22	50	1.77
36352512--36352872	49	7.3	49	71	13	283	16	25	19	38	1.92
36352486--36352925	99	4.4	99	92	0	682	16	25	19	38	1.92
36368371--36368414	23	1.9	23	90	0	70	65	4	22	6	1.35
36369237--36369276	22	2.0	22	85	14	59	62	5	0	32	1.17
36370563--36370688	56	2.2	57	85	9	170	26	0	28	44	1.55
36370663--36370712	26	2.0	26	84	7	68	26	0	34	40	1.56
36374507--36374561	7	8.1	7	78	8	60	16	23	25	34	1.95
36374508--36374562	20	2.7	21	86	8	78	16	21	25	36	1.94
36374507--36374561	27	2.0	27	86	6	76	16	23	25	34	1.95
36381194--36381287	27	3.5	28	82	7	113	19	20	24	36	1.95
36381191--36381286	20	4.8	20	79	5	104	19	20	23	35	1.96
36381248--36381306	27	2.2	27	84	6	75	22	22	20	35	1.96
36381194--36381285	7	13.6	7	77	6	82	19	19	25	35	1.95
36382482--36382520	2	20.5	2	84	10	55	46	0	0	53	1.00
36383771--36383830	19	3.4	18	74	23	56	63	3	0	33	1.11
36383765--36383813	19	2.5	19	80	9	55	65	0	0	34	0.93
36385839--36385936	43	2.3	43	85	3	126	28	15	24	31	1.95
36388028--36388065	17	2.2	17	86	9	51	28	0	5	65	1.14
36388099--36388178	41	2.0	41	84	0	106	22	3	10	63	1.41
36388158--36388199	21	2.0	21	81	9	50	33	0	2	64	1.07
36399133--36399180	7	6.9	7	100	0	96	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36399146--36399185	9	4.1	9	82	17	53	42	0	0	57	0.98
36399133--36399187	21	2.7	21	94	5	96	43	0	0	56	0.99
36407578--36407619	21	2.0	21	90	0	66	33	4	16	45	1.69
36410468--36410516	21	2.5	20	83	6	64	32	6	14	46	1.69
36419353--36419409	29	2.0	29	82	0	69	29	0	7	63	1.21
36419421--36419466	20	2.2	22	80	11	60	21	0	8	69	1.15
36419423--36419466	21	2.1	21	87	4	63	20	0	9	70	1.14
36419583--36419617	18	1.9	18	88	11	54	8	5	5	80	1.03
36427758--36427815	2	29.0	2	100	0	116	50	0	0	50	1.00
36433427--36433485	27	2.2	27	93	6	102	28	27	20	23	1.99
36433479--36433568	27	3.3	27	84	4	101	31	27	11	30	1.91
36433504--36433578	27	2.8	27	84	6	91	30	29	10	29	1.91
36441787--36441854	29	2.3	30	82	2	84	32	2	2	61	1.26
36441846--36441887	20	2.1	20	82	8	50	33	2	0	64	1.07
36441859--36441890	11	3.1	11	91	8	50	34	6	0	59	1.23
36457348--36457383	18	2.1	17	89	5	54	36	16	8	38	1.79
36464956--36465004	23	2.1	23	82	14	57	16	8	0	75	1.03
36467021--36467066	22	2.1	22	84	8	58	13	8	15	63	1.52
36471692--36471730	18	2.2	18	85	0	51	48	5	30	15	1.66
36489875--36489951	6	13.7	6	76	13	74	40	0	1	58	1.06
36489875--36489962	17	5.7	16	76	16	87	42	1	1	55	1.14
36489863--36489960	27	3.5	27	82	9	108	39	2	2	56	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36489863--36489944	11	7.4	11	76	14	62	37	1	2	58	1.19
36491774--36491949	29	6.0	30	81	9	193	36	22	5	35	1.76
36491958--36492164	29	7.2	30	66	17	109	31	26	4	37	1.76
36491921--36492164	58	4.3	58	84	9	290	33	26	4	36	1.76
36504119--36505140	68	15.0	68	93	1	1728	34	18	20	27	1.95
36505456--36505527	6	12.8	6	76	14	73	40	0	1	58	1.07
36505456--36505538	16	5.4	16	76	17	86	42	1	1	55	1.15
36505455--36505536	27	3.0	27	85	5	103	40	1	1	57	1.14
36505455--36505520	11	6.0	11	78	15	57	37	0	1	60	1.06
36507347--36507466	30	4.0	30	83	7	136	37	21	5	35	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182