genome.fa.s9.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  94  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30573570--30573808	52	4.6	52	76	9	218	28	14	24	33	1.94
30575839--30575877	15	2.6	15	83	0	51	23	15	33	28	1.95
30579341--30579387	24	2.0	24	82	0	58	65	6	27	0	1.16
30585158--30585209	20	2.6	21	75	9	63	32	3	15	48	1.63
30595465--30595506	21	2.0	21	95	0	75	40	19	7	33	1.78
30596235--30596301	34	2.0	34	84	0	89	55	16	8	19	1.67
30596235--30596290	17	3.3	17	70	9	51	51	19	10	17	1.74
30610770--30610819	18	2.8	18	84	0	64	2	20	2	76	0.99
30619763--30619792	14	2.2	14	94	5	53	43	10	16	30	1.81
30622360--30622588	24	9.5	24	84	0	278	24	23	16	35	1.94
30622358--30622592	48	4.9	48	86	0	308	25	23	15	35	1.94
30624067--30624140	29	2.5	29	86	4	94	21	14	16	47	1.82
30626014--30626055	14	2.9	14	80	16	50	16	4	21	57	1.58
30632122--30632146	13	1.9	13	100	0	50	24	16	12	48	1.79
30641337--30641376	19	2.0	21	85	9	57	17	5	12	65	1.44
30645141--30645181	20	2.1	19	95	4	73	0	24	0	75	0.80
30645141--30645181	6	6.3	7	86	13	61	0	24	0	75	0.80
30651928--30651969	17	2.4	18	88	4	59	33	28	16	21	1.95
30659312--30659349	12	3.1	12	82	17	51	15	13	0	71	1.16
30672232--30672271	20	2.0	20	85	0	53	40	12	10	37	1.77
30672231--30672303	24	3.2	23	77	12	71	35	12	15	36	1.84
30672243--30672305	24	2.7	23	80	9	74	36	12	14	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30672299--30672404	47	2.3	47	79	0	113	23	17	22	35	1.95
30675294--30675338	16	2.6	18	79	13	58	42	4	8	44	1.56
30676641--30676666	13	2.0	13	100	0	52	7	0	15	76	0.99
30679341--30679371	16	1.9	16	93	0	53	9	9	9	70	1.33
30687093--30687139	24	2.0	24	83	8	60	2	25	0	72	0.96
30708717--30708757	18	2.3	18	91	0	64	43	7	36	12	1.70
30710044--30710078	6	6.0	6	93	6	63	85	0	14	0	0.59
30722988--30723038	26	2.0	26	88	0	75	31	21	19	27	1.97
30723839--30723869	16	1.9	16	93	0	53	22	12	3	61	1.46
30725527--30725739	107	2.0	107	91	0	345	28	13	31	26	1.94
30726283--30726341	17	3.5	17	72	4	57	16	20	11	50	1.76
30726283--30726321	16	2.4	17	86	4	53	15	20	12	51	1.76
30727212--30727256	23	2.0	23	82	8	56	22	15	4	57	1.56
30728452--30728482	16	1.9	16	93	0	53	22	16	0	61	1.34
30735246--30735278	12	2.8	12	86	13	50	45	0	0	54	0.99
30745674--30745698	11	2.3	11	100	0	50	16	8	0	76	1.02
30752841--30752879	19	2.0	20	95	5	71	20	17	15	46	1.84
30753049--30753340	147	2.0	147	97	0	548	37	10	21	30	1.88
30754523--30754565	22	2.0	22	86	9	61	37	20	2	39	1.66
30754865--30755234	195	1.9	193	82	5	460	28	21	24	25	1.99
30755962--30756534	191	3.0	191	100	0	1146	31	14	17	36	1.90
30756903--30757480	42	13.8	41	80	7	515	37	23	17	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30756915--30757480	126	4.5	126	80	5	599	37	22	17	21	1.94
30757886--30757932	20	2.4	19	89	10	76	0	12	8	78	0.95
30760782--30760817	18	2.0	18	100	0	72	22	22	16	38	1.93
30763645--30763694	20	2.3	20	80	10	55	54	12	6	28	1.60
30765678--30766097	144	2.9	143	82	10	445	43	9	3	43	1.53
30765661--30766105	141	3.1	141	82	11	518	42	9	3	44	1.54
30765882--30766369	242	2.1	244	84	7	657	43	8	2	45	1.49
30766078--30766131	25	2.2	26	83	12	69	38	7	1	51	1.41
30766016--30766216	93	2.1	99	86	6	288	42	7	3	46	1.50
30766102--30766145	19	2.2	21	88	8	65	43	6	2	47	1.42
30768112--30768206	48	2.0	48	100	0	190	38	14	18	27	1.90
30772290--30772327	15	2.6	15	95	4	69	47	7	13	31	1.71
30775054--30775119	28	2.3	28	82	12	73	16	16	16	50	1.79
30783565--30783622	16	3.7	16	74	17	59	17	1	6	74	1.12
30786324--30786368	23	2.0	23	90	0	72	28	28	17	24	1.97
30786326--30786378	23	2.3	23	83	0	70	30	30	16	22	1.96
30795762--30795798	19	1.9	19	88	0	56	37	2	5	54	1.38
30812081--30812121	17	2.4	18	80	19	52	14	17	17	51	1.77
30822012--30822046	18	1.9	18	88	0	52	57	14	0	28	1.38
30828635--30828692	17	3.5	17	71	15	50	46	0	1	51	1.11
30828640--30828756	62	1.9	59	84	5	153	49	2	3	44	1.32
30828733--30828783	20	2.8	18	78	21	61	50	3	1	43	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30836664--30836719	18	3.1	18	89	0	85	28	16	14	41	1.87
30837119--30837153	3	11.7	3	93	0	61	65	0	0	34	0.93
30838216--30838288	7	10.7	7	76	5	60	36	21	21	19	1.95
30838229--30838281	20	2.7	20	91	5	81	35	20	24	18	1.95
30838213--30838294	27	3.1	27	85	1	103	40	20	20	18	1.92
30838216--30838295	20	4.0	20	82	8	65	37	22	21	18	1.94
30838320--30838354	15	2.4	15	90	4	54	14	5	31	48	1.67
30838329--30838388	20	3.0	20	92	0	102	16	1	33	48	1.56
30844264--30844293	3	9.7	3	92	7	51	70	0	0	30	0.88
30845352--30845409	20	3.0	20	75	12	66	41	22	18	17	1.90
30845363--30845406	13	3.4	13	78	12	54	40	25	15	18	1.90
30845354--30845406	26	2.0	26	85	3	70	41	24	16	16	1.89
30845352--30845439	40	2.2	40	83	4	106	39	21	18	20	1.92
30845375--30845442	14	5.1	14	71	8	52	35	20	20	23	1.96
30845465--30845499	15	2.4	15	90	4	54	14	5	31	48	1.67
30845474--30845551	20	3.9	20	94	0	129	17	1	32	48	1.56
30845518--30845563	20	2.2	20	84	3	56	28	2	23	45	1.65
30848700--30848983	142	2.0	142	93	1	480	30	15	19	33	1.94
30857166--30857204	17	2.2	18	86	13	55	71	0	2	25	0.98
30861666--30861711	19	2.4	19	88	0	65	36	0	8	54	1.32
30861785--30862008	51	4.4	50	68	14	136	44	1	8	45	1.44
30861674--30862085	153	2.8	146	83	6	506	42	2	9	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30862676--30862768	45	2.1	45	100	0	186	35	12	12	38	1.82
30863110--30863578	237	2.0	237	92	1	780	36	7	14	42	1.73
30896430--30896482	21	2.5	21	75	6	54	35	24	7	32	1.84
30907224--30907254	16	1.9	16	93	0	53	61	0	16	22	1.34
30908018--30908070	26	2.0	26	85	0	70	30	22	18	28	1.98
30908079--30908157	38	2.1	37	90	2	122	31	11	25	31	1.91
30910526--30910576	19	2.7	18	77	19	59	82	1	11	3	0.89
30910954--30911299	42	8.5	42	84	7	437	20	19	23	36	1.95
30910954--30911299	83	4.2	82	85	7	449	20	19	23	36	1.95
30911669--30912159	3	163.7	3	73	0	244	7	9	26	57	1.56
30911667--30912159	30	16.9	30	74	5	287	7	9	26	57	1.56
30911673--30912165	87	5.7	87	77	4	386	7	9	26	56	1.57
30912635--30913111	243	2.0	237	90	3	758	35	7	14	42	1.73
30917291--30917326	16	2.2	16	90	0	54	13	38	16	30	1.88
30924819--30924886	25	2.7	25	88	4	93	44	30	0	25	1.54
30925002--30925070	7	10.0	7	84	3	59	18	24	20	36	1.95
30925004--30925083	34	2.4	34	80	0	88	20	22	18	38	1.93
30925004--30925088	14	6.1	14	83	6	75	18	22	17	41	1.91
30926138--30926173	3	12.7	3	88	11	58	33	0	0	66	0.92
30929108--30929151	20	2.2	20	87	0	61	36	0	4	59	1.18
30931524--30931769	33	7.3	34	73	11	159	31	15	24	28	1.95
30931523--30931744	68	3.3	68	92	0	372	31	15	25	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30931559--30931848	33	8.7	33	73	7	219	30	15	24	29	1.96
30931556--30931848	68	4.4	65	82	5	219	30	15	24	29	1.96
30934020--30934045	8	3.2	8	100	0	52	76	0	11	11	1.01
30937170--30937201	12	2.6	13	90	9	50	68	0	3	28	1.04
30937599--30937642	18	2.4	18	76	0	52	29	2	2	65	1.16
30938369--30938474	33	3.3	31	78	11	115	55	2	1	39	1.25
30940592--30940635	21	2.1	21	91	8	72	34	34	11	20	1.88
30940604--30940643	21	2.0	21	85	5	55	37	30	12	20	1.89
30955203--30955255	26	2.0	26	96	0	97	24	11	26	37	1.89
30971014--30971329	169	1.9	169	99	0	623	29	19	21	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182