genome.fa.s9.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  29  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11616159--11616862	244	2.9	240	81	8	752	47	7	7	38	1.60
11616727--11616760	5	6.6	5	89	3	50	41	0	2	55	1.15
11616724--11616766	15	2.9	14	83	13	50	44	0	4	51	1.22
11621674--11621703	6	5.0	6	100	0	60	50	0	33	16	1.46
11622735--11622769	6	5.8	6	96	0	61	11	17	54	17	1.71
11626306--11626337	9	3.6	9	91	0	55	40	0	59	0	0.97
11629434--11629486	27	1.9	27	88	3	79	45	33	0	20	1.52
11633753--11633803	17	2.9	17	80	16	59	29	0	3	66	1.09
11633952--11633998	24	2.0	23	87	4	67	31	8	10	48	1.68
11635957--11636165	91	2.3	91	85	0	283	29	13	17	40	1.87
11635956--11636168	31	7.0	31	62	15	86	28	13	17	40	1.87
11638342--11638449	9	11.9	9	67	20	55	62	0	4	32	1.22
11644898--11644978	27	3.0	27	83	0	99	18	30	28	22	1.97
11649345--11649385	6	6.8	6	83	10	57	65	14	2	17	1.37
11649841--11649865	6	4.2	6	100	0	50	16	32	36	16	1.90
11652087--11652142	23	2.6	21	75	16	51	50	1	3	44	1.29
11652313--11652346	17	2.0	17	94	0	59	52	2	0	44	1.16
11652533--11652570	20	1.9	20	89	10	60	10	60	0	28	1.30
11652580--11652634	10	5.5	10	75	16	60	32	21	43	1	1.63
11652658--11652713	27	2.0	28	89	3	87	23	25	28	23	1.99
11653313--11653378	31	2.2	30	86	10	98	28	13	7	50	1.69
11658049--11658100	15	3.5	15	78	0	50	23	13	17	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11659902--11659934	13	2.7	13	90	9	52	72	6	0	21	1.05
11669216--11669251	2	18.5	2	94	5	65	0	47	0	52	1.00
11675450--11675489	20	2.0	21	90	5	64	52	0	5	42	1.23
11683363--11683404	16	2.5	17	80	7	50	59	2	4	33	1.31
11683416--11683456	17	2.3	18	87	4	57	53	2	0	43	1.13
11690000--11690039	20	2.0	19	85	9	53	60	0	2	37	1.11
11693078--11693130	23	2.3	23	80	0	61	37	0	0	62	0.96
11696731--11696773	16	2.9	14	83	16	52	27	0	2	69	1.00
11697283--11697363	13	6.3	13	69	12	60	48	1	0	50	1.08
11698308--11698339	12	2.4	14	90	10	50	15	6	0	78	0.95
11706057--11706081	4	6.2	4	100	0	50	0	0	24	76	0.80
11710087--11710138	23	2.3	21	78	15	59	50	0	3	46	1.20
11713804--11713828	2	12.5	2	100	0	50	48	0	0	52	1.00
11714065--11714111	24	2.0	24	83	8	60	36	2	4	57	1.30
11715573--11715607	15	2.2	16	90	5	54	62	0	2	34	1.10
11716144--11716204	24	2.5	24	78	17	63	16	4	6	72	1.24
11716160--11716219	24	2.3	26	80	8	61	18	6	5	70	1.29
11716603--11716655	26	2.0	27	85	10	74	66	3	5	24	1.31
11723096--11723135	16	2.5	16	91	0	62	55	2	10	32	1.47
11728915--11728961	25	1.9	24	83	12	60	57	6	0	36	1.24
11729683--11729729	18	2.5	19	80	12	62	74	4	4	17	1.14
11730357--11730448	9	9.9	9	77	11	78	27	4	1	67	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11730357--11730505	18	7.8	18	70	12	66	30	4	2	61	1.30
11730356--11730448	19	5.0	18	75	5	78	26	4	1	67	1.16
11734319--11734347	11	2.6	11	100	0	58	17	27	37	17	1.92
11734393--11734423	16	1.9	16	93	0	53	9	3	45	41	1.53
11734415--11734439	8	3.1	8	100	0	50	12	0	40	48	1.40
11734982--11735164	59	3.1	59	81	4	226	54	6	15	23	1.65
11735160--11735234	21	3.6	21	70	10	73	62	6	5	25	1.41
11740428--11740470	22	2.0	22	86	9	61	39	11	0	48	1.40
11743269--11743296	5	5.6	5	100	0	56	82	0	17	0	0.68
11754318--11754342	2	12.5	2	100	0	50	48	0	0	52	1.00
11757469--11757540	35	2.2	32	80	14	83	55	1	0	43	1.08
11757488--11757558	29	2.2	32	80	11	76	57	4	0	38	1.18
11768666--11768754	17	5.4	16	81	9	72	41	0	3	55	1.17
11768694--11768773	11	7.2	11	80	12	85	42	0	3	53	1.18
11768660--11768772	28	4.0	27	83	11	120	39	0	4	55	1.20
11768680--11768754	38	2.0	38	91	0	123	41	0	2	56	1.13
11768680--11768755	6	13.7	6	77	15	83	42	0	2	55	1.14
11769580--11769633	25	2.3	23	79	14	74	40	0	14	44	1.46
11769866--11769892	14	1.9	14	100	0	54	14	22	25	37	1.93
11770428--11770767	164	2.1	163	87	1	477	26	17	13	42	1.86
11770836--11771026	29	6.6	28	70	16	95	35	27	4	32	1.76
11770984--11771182	59	3.4	58	84	4	265	32	31	3	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11770870--11771086	88	2.5	89	86	6	293	33	29	3	33	1.75
11770884--11771182	29	10.2	29	70	18	167	32	31	3	32	1.74
11773865--11773901	4	9.2	4	100	0	74	75	0	0	24	0.80
11773708--11773889	63	2.8	64	82	10	230	51	3	0	45	1.17
11774052--11774097	15	3.1	15	73	17	51	28	10	8	52	1.66
11778642--11778697	11	4.9	11	78	8	51	41	1	1	55	1.21
11778642--11778697	6	9.8	6	79	11	55	41	1	1	55	1.21
11778663--11778697	17	2.1	17	94	0	61	48	2	0	48	1.16
11779110--11779149	14	2.9	14	100	0	80	50	22	0	27	1.50
11780305--11780532	90	2.5	90	87	4	318	36	23	3	35	1.74
11780305--11780518	60	3.6	60	84	3	263	38	22	3	35	1.72
11780300--11780532	30	7.8	29	81	7	234	36	23	4	35	1.75
11787907--11788062	50	3.1	50	79	1	179	41	18	23	16	1.89
11787904--11788053	51	3.0	51	80	1	185	40	20	23	16	1.91
11788348--11789136	76	9.9	76	84	9	968	33	14	17	33	1.90
11788724--11789087	38	9.6	37	70	15	251	33	14	16	35	1.89
11789410--11789446	17	2.2	17	95	0	65	37	2	5	54	1.38
11789393--11789448	11	4.9	11	76	8	51	39	1	3	55	1.28
11789861--11789899	14	2.8	14	88	0	51	48	20	0	30	1.50
11791040--11791237	30	6.6	30	85	2	231	35	24	4	34	1.76
11791035--11791237	90	2.3	89	85	5	266	35	24	4	34	1.77
11793101--11793152	24	2.1	24	82	10	61	34	0	1	63	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11801045--11801102	22	2.6	22	91	2	89	31	0	8	60	1.27
11803508--11803574	31	2.2	31	81	10	75	44	7	14	32	1.74
11813687--11813721	2	17.5	2	100	0	70	48	0	0	51	1.00
11818310--11818421	59	1.9	59	92	0	188	40	14	6	39	1.71
11828307--11828343	17	2.1	18	90	5	58	13	13	0	72	1.11
11828313--11828351	17	2.3	17	86	8	53	12	15	2	69	1.30
11831625--11831662	3	12.7	3	88	0	58	5	31	0	63	1.17
11832957--11832994	17	2.1	19	85	9	53	42	10	2	44	1.52
11834329--11834354	2	13.0	2	100	0	52	50	0	0	50	1.00
11836211--11836245	6	5.8	6	93	0	61	31	48	17	2	1.61
11839414--11839446	3	11.3	3	93	6	59	0	30	0	69	0.88
11839583--11839612	14	2.1	14	93	0	51	3	13	10	73	1.21
11842800--11842839	21	1.9	21	84	0	53	27	0	25	47	1.52
11844189--11844313	30	4.2	28	71	15	92	32	4	23	39	1.76
11844251--11844345	29	3.2	29	83	4	102	31	3	27	37	1.72
11844271--11844353	29	2.9	29	85	1	105	31	3	27	37	1.74
11844368--11844449	30	2.8	29	75	5	74	34	4	32	28	1.78
11844383--11844750	29	12.5	30	76	8	283	38	2	24	35	1.69
11844383--11844725	30	11.7	29	75	9	257	38	2	24	34	1.69
11844379--11844720	59	5.8	60	77	6	240	38	2	24	34	1.70
11844409--11844720	146	2.1	145	84	6	414	39	2	23	35	1.67
11844445--11844720	146	1.9	146	88	5	416	39	2	22	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11844688--11844751	30	2.1	30	85	5	85	26	0	28	45	1.54
11845818--11845874	27	2.1	28	90	3	89	35	1	0	63	1.05
11847836--11847880	23	2.0	23	82	8	56	44	11	8	35	1.71
11852988--11853050	28	2.2	28	83	5	74	25	12	28	33	1.92
11853130--11853254	30	4.2	29	86	5	135	36	3	23	37	1.71
11853147--11853254	30	3.6	30	92	0	162	37	2	22	37	1.69
11854997--11855053	17	3.4	17	90	0	69	52	5	0	42	1.24
11854997--11855053	6	10.0	6	74	11	57	52	5	0	42	1.24
11855010--11855064	17	3.2	17	89	0	83	58	7	0	34	1.26
11862313--11862369	30	2.0	27	86	10	78	59	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182