genome.fa.s9.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  169  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51199980--51200040	30	2.0	30	100	0	122	26	6	16	50	1.69
51200574--51200639	28	2.4	27	82	7	89	48	0	0	51	1.00
51200617--51200666	20	2.5	20	73	0	55	50	0	2	48	1.12
51205382--51205427	21	2.3	19	85	7	56	47	4	4	43	1.42
51211526--51211569	17	2.6	17	82	7	54	22	0	2	75	0.92
51214176--51214239	27	2.4	26	77	12	76	21	23	21	32	1.98
51215799--51215869	28	2.4	29	86	6	99	49	18	18	14	1.80
51219003--51219066	30	2.2	30	91	2	103	37	3	14	45	1.60
51219637--51219733	6	16.3	6	70	20	62	43	3	3	50	1.33
51219646--51219728	25	3.3	25	86	6	89	39	3	2	54	1.31
51220634--51220696	16	4.2	16	78	9	62	63	1	0	34	1.04
51220633--51220682	9	5.8	9	79	9	59	60	0	0	40	0.97
51221593--51221754	30	5.4	30	91	3	240	38	24	3	34	1.71
51221579--51221796	90	2.5	88	84	8	257	36	25	3	34	1.74
51221593--51221796	60	3.4	58	83	8	227	37	25	3	34	1.73
51221593--51221854	30	8.9	29	81	6	199	36	25	2	34	1.71
51221771--51221907	58	2.3	58	86	1	184	32	32	1	34	1.67
51221778--51221870	28	3.3	27	70	16	80	31	33	0	35	1.58
51221781--51221877	30	3.3	29	67	17	74	30	32	0	36	1.58
51230366--51230645	38	7.4	38	67	15	175	34	14	18	32	1.92
51230345--51230924	76	7.7	75	84	7	745	33	16	18	32	1.93
51230481--51230682	38	5.3	38	68	15	139	34	15	17	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51231225--51231318	6	16.0	6	72	20	74	45	3	1	50	1.24
51231234--51231318	25	3.6	23	77	13	75	47	3	1	48	1.26
51231626--51231677	3	17.0	3	80	4	50	59	1	0	38	1.08
51231633--51231677	9	5.2	9	81	10	58	60	0	0	40	0.97
51231627--51231690	16	4.0	16	78	11	60	62	3	0	34	1.11
51232576--51232807	30	7.7	30	80	5	220	38	22	3	35	1.71
51232576--51232810	90	2.6	88	85	7	280	37	22	3	35	1.71
51232785--51232920	57	2.3	58	86	2	193	32	33	1	32	1.67
51237114--51237359	72	3.4	72	89	1	375	36	18	11	33	1.87
51245589--51245652	30	2.1	30	91	0	101	31	12	1	54	1.47
51245589--51245662	30	2.5	30	86	4	96	33	13	1	51	1.50
51246622--51246685	29	2.2	28	88	2	92	29	1	29	39	1.66
51246632--51246700	28	2.4	29	87	2	86	27	2	34	34	1.72
51246632--51246712	29	2.8	29	83	7	85	28	2	30	38	1.70
51246736--51246801	27	2.4	27	89	5	96	40	3	21	34	1.68
51246697--51246807	29	3.9	27	74	14	107	38	3	24	33	1.73
51246697--51246874	86	2.1	86	84	5	225	39	4	24	32	1.75
51251574--51251601	2	14.0	2	100	0	56	50	0	0	50	1.00
51253599--51253641	16	2.6	17	81	3	52	25	0	2	72	0.97
51257906--51257959	28	1.9	28	88	0	81	51	11	20	16	1.74
51258105--51258213	17	6.6	17	77	13	68	44	3	0	51	1.25
51258103--51258196	23	4.0	24	75	8	79	40	3	1	55	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51258104--51258197	6	16.0	6	72	19	65	41	3	1	54	1.23
51258104--51258197	11	8.5	11	71	16	70	41	3	1	54	1.23
51258775--51258839	20	3.3	19	79	14	69	44	4	1	49	1.32
51260077--51260302	29	7.8	29	77	11	178	37	24	3	34	1.71
51260244--51260333	28	3.1	30	75	13	89	30	27	5	36	1.80
51262190--51262235	21	2.3	19	85	7	56	47	4	2	45	1.34
51262963--51263009	21	2.3	20	79	13	51	46	10	10	31	1.73
51267380--51267877	28	17.1	29	65	22	158	36	3	26	32	1.75
51267340--51267879	58	9.3	58	84	7	668	36	3	27	32	1.75
51267860--51267898	19	2.1	19	95	0	69	38	5	25	30	1.78
51267884--51267954	30	2.5	28	78	13	81	40	0	19	39	1.52
51269683--51270081	58	6.9	59	82	5	440	36	2	26	34	1.71
51269655--51269765	29	3.8	29	72	12	93	36	3	28	30	1.74
51269714--51270040	29	11.2	28	65	23	108	37	2	25	33	1.71
51272231--51272281	24	2.1	24	92	0	84	21	9	9	58	1.58
51272243--51272293	24	2.1	24	88	0	75	21	13	11	52	1.72
51273202--51273367	23	7.4	23	72	14	141	42	21	24	12	1.87
51273177--51273367	48	4.2	44	74	15	158	41	21	25	12	1.87
51276668--51277022	30	12.4	29	75	15	224	33	1	25	38	1.68
51276683--51277009	29	11.4	30	75	10	254	33	1	25	40	1.64
51276673--51277009	59	5.9	58	81	9	363	34	1	25	39	1.64
51276750--51276971	109	2.0	109	92	3	367	33	0	26	39	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51276809--51276912	50	2.1	50	88	0	154	33	0	25	40	1.62
51278682--51278748	34	1.9	35	87	3	100	10	10	34	44	1.73
51278808--51278883	17	4.5	17	70	6	55	50	6	5	38	1.51
51285495--51285579	17	4.9	17	70	8	64	37	3	4	54	1.39
51287534--51287875	29	11.7	29	72	12	227	35	21	2	40	1.65
51287534--51287790	59	4.4	59	80	1	241	36	21	1	40	1.65
51287537--51287874	88	3.8	87	76	7	238	35	22	2	40	1.66
51287555--51287874	59	5.4	59	74	6	179	35	22	1	40	1.65
51287849--51288043	59	3.4	57	79	6	191	34	21	4	38	1.74
51287855--51287947	28	3.3	29	71	17	86	37	24	5	32	1.78
51287968--51288022	29	1.9	29	82	10	69	38	23	3	34	1.73
51298816--51298854	20	2.0	20	90	10	62	30	0	5	64	1.15
51299365--51299424	28	2.1	28	90	0	93	45	3	1	50	1.28
51299439--51299477	13	3.0	13	85	10	53	46	0	0	53	1.00
51299433--51299471	13	2.8	14	84	11	53	43	0	0	56	0.99
51299412--51299498	37	2.3	38	84	6	113	40	2	2	55	1.25
51318417--51318478	32	1.9	32	87	6	90	37	3	0	59	1.13
51322366--51322451	8	11.0	8	86	9	70	52	2	0	45	1.13
51322390--51322468	2	39.5	2	94	0	131	51	0	0	48	1.00
51322436--51322479	22	2.0	22	86	0	61	59	0	2	38	1.10
51322702--51322744	22	1.9	23	85	4	61	20	6	6	65	1.41
51322702--51322760	21	2.7	23	82	14	65	23	5	6	64	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51322993--51323042	23	2.1	24	82	10	59	12	32	12	44	1.78
51323001--51323075	34	2.1	36	95	4	136	14	29	9	46	1.76
51326294--51326334	22	1.9	22	85	5	57	58	2	7	31	1.38
51331488--51331530	19	2.4	18	80	7	52	51	4	0	44	1.22
51333061--51333121	26	2.3	26	100	0	122	40	3	13	42	1.60
51334155--51334379	29	7.7	30	82	6	212	37	25	2	34	1.70
51334127--51334386	59	4.4	59	79	5	224	36	24	3	35	1.72
51334155--51334365	87	2.4	87	78	7	237	38	25	2	33	1.71
51334127--51334383	29	8.8	29	80	5	153	36	24	3	35	1.73
51334391--51334524	58	2.3	59	81	3	155	30	22	5	41	1.75
51335681--51335829	80	1.9	80	97	0	280	52	14	12	21	1.73
51344427--51344467	8	5.4	7	83	16	55	82	0	17	0	0.66
51344427--51344470	15	2.8	16	89	3	72	81	0	18	0	0.68
51344428--51344473	10	4.5	10	80	20	51	80	0	19	0	0.71
51345942--51345987	6	8.0	6	85	9	60	52	0	0	47	1.00
51345926--51345987	17	3.8	17	83	10	76	51	0	1	46	1.10
51345926--51345981	5	10.4	5	78	17	51	53	0	1	44	1.11
51345942--51345987	11	4.0	12	83	11	60	52	0	0	47	1.00
51346444--51346503	17	3.5	17	71	24	63	41	5	35	18	1.72
51346429--51346530	34	3.0	34	88	0	150	45	4	32	17	1.70
51352197--51352431	72	3.3	71	89	1	344	35	19	14	30	1.92
51357296--51357347	20	2.6	20	84	0	68	69	1	1	26	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51359874--51360021	72	2.1	72	84	2	190	38	18	14	29	1.90
51365403--51366064	329	2.0	329	99	0	1306	34	13	18	32	1.90
51366728--51366785	23	2.5	24	81	10	68	37	0	3	58	1.15
51366728--51366785	12	5.0	12	77	6	57	37	0	3	58	1.15
51367576--51367620	22	2.0	22	86	0	63	13	11	2	73	1.19
51370378--51370467	6	13.3	6	71	23	56	16	7	0	75	1.02
51370381--51370467	7	12.6	7	72	8	63	16	8	0	75	1.02
51370378--51370467	14	6.6	13	80	13	76	16	7	0	75	1.02
51370387--51370439	14	3.9	14	95	2	90	13	11	0	75	1.05
51370387--51370461	27	2.8	27	84	9	91	16	9	0	74	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182