genome.fa.s9.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  85  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26683647--26683680	3	11.3	3	100	0	68	67	0	0	32	0.91
26684599--26684624	2	13.0	2	100	0	52	50	0	0	50	1.00
26692192--26692370	41	4.4	40	81	7	182	30	18	30	19	1.96
26692192--26692357	82	2.0	81	83	3	208	30	19	31	19	1.96
26692309--26692440	70	1.9	70	87	6	196	30	24	28	17	1.97
26692374--26692468	41	2.3	41	83	0	118	30	22	27	20	1.98
26692266--26692471	111	1.9	111	88	0	313	30	22	28	18	1.97
26692512--26692551	20	2.0	20	85	0	53	50	5	0	45	1.23
26692851--26692896	17	2.7	18	77	9	53	0	45	0	54	0.99
26695583--26695628	23	2.0	23	100	0	92	43	4	30	21	1.72
26698019--26698244	43	5.3	43	83	2	267	26	16	26	30	1.97
26701651--26701978	158	2.1	158	87	1	469	31	25	20	22	1.98
26710341--26710378	19	2.0	18	90	10	58	76	2	0	21	0.91
26723145--26723184	5	8.0	5	88	0	62	2	20	0	77	0.88
26724012--26724053	10	3.9	10	82	17	57	42	0	2	54	1.13
26725853--26726319	30	15.9	30	79	9	346	35	23	4	36	1.74
26725860--26726291	59	7.4	57	74	11	297	35	23	3	37	1.72
26725848--26726308	117	3.9	116	79	8	427	35	23	4	36	1.74
26726009--26726285	146	1.9	145	85	8	384	36	24	3	35	1.74
26726038--26726318	146	1.9	145	86	5	397	35	25	4	34	1.77
26725930--26726343	29	14.2	29	78	9	242	34	24	4	36	1.75
26727598--26727628	2	15.5	2	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26744154--26744211	16	3.6	16	80	0	71	37	13	41	6	1.72
26744975--26745315	98	3.5	98	87	1	459	19	25	18	37	1.94
26744975--26745315	49	7.0	49	74	5	287	19	25	18	37	1.94
26757382--26757416	12	3.0	12	91	4	54	82	2	0	14	0.77
26758345--26758386	16	2.6	16	92	0	66	33	14	45	7	1.72
26766572--26766625	12	4.5	12	83	0	63	11	27	16	44	1.82
26807309--26807363	26	2.1	26	93	0	92	30	20	1	47	1.60
26814561--26814602	19	2.4	18	84	11	52	16	14	11	57	1.66
26815199--26815232	10	3.2	10	88	12	50	73	0	23	2	0.97
26815198--26815226	10	2.7	11	89	10	51	75	0	24	0	0.80
26828685--26828754	34	2.1	34	100	0	140	50	5	11	32	1.62
26835097--26835126	12	2.5	12	94	0	51	53	20	16	10	1.71
26844207--26844236	14	2.2	14	94	5	53	36	10	23	30	1.87
26855517--26855586	26	2.7	26	95	0	122	28	24	21	25	1.99
26856279--26856319	22	2.0	20	85	9	55	31	0	26	41	1.56
26860060--26860114	26	2.1	27	82	3	67	16	10	12	60	1.60
26869383--26869441	24	2.4	24	83	8	75	10	38	3	47	1.54
26870216--26870240	13	1.9	13	100	0	50	76	8	0	16	1.02
26874085--26874127	20	2.2	19	83	4	50	72	0	16	11	1.13
26874542--26874573	16	1.9	17	93	6	57	59	12	0	28	1.34
26878170--26878195	5	5.2	5	100	0	52	0	19	0	80	0.71
26878397--26878426	5	6.0	5	100	0	60	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26878554--26878591	16	2.2	18	86	9	53	34	5	5	55	1.45
26882629--26882708	31	2.6	32	88	5	112	53	1	15	30	1.49
26883872--26883896	12	2.1	12	100	0	50	0	24	8	68	1.16
26884544--26884623	6	14.0	6	73	15	71	42	1	2	53	1.22
26884544--26884603	17	3.6	16	81	4	66	41	0	3	55	1.16
26884555--26884609	23	2.4	23	84	3	76	43	0	3	52	1.18
26884548--26884586	16	2.4	16	84	16	53	38	0	5	56	1.22
26884575--26884623	17	2.8	17	87	3	62	46	2	2	48	1.25
26885334--26885388	18	2.9	19	83	5	67	54	1	3	40	1.28
26885355--26885415	3	20.0	3	89	3	95	62	0	3	34	1.12
26886443--26886539	30	3.2	30	82	4	115	34	25	4	36	1.75
26886453--26886547	30	3.2	30	84	3	120	36	24	4	34	1.75
26886453--26886561	30	3.6	30	83	4	105	34	25	4	34	1.77
26886596--26886674	28	2.8	27	83	9	79	26	22	8	41	1.83
26891694--26891976	108	2.6	108	92	0	467	32	13	26	27	1.93
26891702--26891977	54	5.1	54	71	11	242	32	13	26	28	1.93
26892105--26892235	58	2.3	58	83	0	154	12	11	32	44	1.78
26892103--26892222	28	4.2	28	74	12	109	13	10	31	44	1.78
26902880--26903258	188	2.0	188	99	0	749	19	6	27	46	1.74
26904763--26906292	515	3.0	511	91	1	2406	20	17	16	46	1.84
26912355--26912526	39	4.4	39	75	2	148	39	22	16	22	1.92
26912341--26912495	78	2.0	78	87	0	220	39	21	16	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26912354--26912526	78	2.2	78	82	2	204	39	21	16	21	1.91
26912462--26912536	39	1.9	39	91	0	123	37	22	17	22	1.94
26915082--26915329	51	4.8	51	84	2	300	31	22	14	31	1.93
26922166--26922403	51	4.6	51	84	4	257	29	23	14	32	1.94
26922166--26922403	102	2.3	103	84	4	284	29	23	14	32	1.94
26923538--26923604	33	2.0	33	97	0	125	19	8	28	43	1.81
26931627--26932043	142	2.9	141	94	1	735	26	19	21	32	1.97
26936687--26936716	14	2.2	14	94	5	53	36	10	23	30	1.87
26942940--26942969	14	2.2	14	94	5	53	36	10	23	30	1.87
26942996--26943026	7	4.4	7	95	0	53	16	9	41	32	1.80
26944280--26944515	73	3.3	71	74	9	192	26	20	27	25	1.99
26944605--26944789	78	2.4	78	87	1	255	37	21	17	23	1.94
26944617--26944820	78	2.6	78	84	1	230	36	21	17	24	1.94
26944605--26944828	39	5.7	39	77	2	180	36	21	17	23	1.95
26945624--26945661	15	2.5	15	86	0	58	36	0	0	63	0.95
26945605--26945659	23	2.2	26	81	12	71	32	1	1	63	1.15
26949065--26949126	24	2.6	24	84	2	81	45	16	9	29	1.79
26952670--26952729	30	2.0	30	86	0	84	46	3	10	40	1.54
26956472--26956536	12	5.6	12	71	14	64	21	13	23	41	1.89
26956449--26956559	23	4.8	23	87	3	143	25	12	21	40	1.88
26956525--26956570	23	2.0	23	83	8	58	39	10	17	32	1.84
26961996--26962332	23	14.7	23	84	4	297	48	12	5	32	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26961998--26962332	46	7.3	46	84	4	372	48	12	5	33	1.65
26961997--26962343	69	5.1	69	83	3	378	48	13	5	32	1.66
26962769--26962939	36	4.8	36	86	2	238	36	23	9	29	1.87
26964763--26964815	20	2.5	20	81	6	52	32	5	18	43	1.74
26972443--26972495	28	2.0	26	96	0	79	32	7	11	49	1.67
26976250--26976282	14	2.3	15	89	5	50	21	3	0	75	0.93
26977281--26977318	17	2.2	17	86	9	51	5	7	7	78	1.07
26983628--26983667	21	2.0	21	85	5	55	57	12	10	20	1.63
26991442--26991482	16	2.5	17	80	11	50	75	4	0	19	0.98
26995250--26995289	17	2.4	17	91	0	62	15	22	12	50	1.77
27008686--27008733	18	2.7	18	80	0	60	25	16	22	35	1.95
27016094--27016161	23	3.0	23	88	0	100	47	11	2	38	1.55
27041859--27041897	21	1.9	21	89	5	62	25	17	15	41	1.89
27048684--27048723	19	2.0	20	90	4	64	17	0	10	72	1.11
27051158--27051199	18	2.2	20	84	16	63	23	4	2	69	1.20
27056660--27056707	19	2.5	19	80	6	53	25	16	27	31	1.97
27058662--27058700	12	3.2	12	89	7	53	66	2	30	0	1.05
27082890--27082920	16	1.9	16	93	0	53	61	0	16	22	1.34
27083712--27083765	26	2.1	26	89	6	83	29	25	18	25	1.98
27084480--27084522	12	3.3	14	81	15	56	0	13	0	86	0.58
27084480--27084522	21	2.2	20	87	8	61	0	13	0	86	0.58
27085077--27085122	17	2.8	17	83	3	58	45	13	21	19	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27094858--27094900	17	2.3	19	84	11	54	67	6	23	2	1.27
27094983--27095026	18	2.5	18	88	3	63	18	11	11	59	1.61
27097117--27097333	23	9.4	23	89	0	272	48	12	5	32	1.66
27107417--27107469	27	2.0	27	92	0	88	30	3	28	37	1.75
27107423--27107482	27	2.2	26	82	8	75	31	6	25	36	1.82
27138730--27138777	24	2.0	25	84	12	64	70	4	8	16	1.27
27150091--27150120	8	3.8	8	90	0	51	76	0	0	23	0.78
27163450--27163475	10	2.6	10	100	0	52	61	38	0	0	0.96
27173331--27173376	3	15.3	3	78	17	51	69	0	30	0	0.89
27173748--27173804	17	3.4	16	72	11	51	15	22	10	50	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182