genome.fa.s9.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  157  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48219372--48219412	15	2.9	14	85	14	57	73	0	0	26	0.84
48219372--48219403	8	4.1	8	92	8	57	75	0	0	25	0.81
48219317--48219475	63	2.5	62	85	9	216	58	2	0	38	1.16
48219994--48221043	80	13.1	80	90	1	1554	26	17	22	32	1.97
48221112--48221265	50	3.1	50	86	1	193	22	22	17	37	1.94
48222200--48222233	6	5.3	6	86	13	50	0	23	0	76	0.79
48222201--48222255	14	3.8	13	76	19	56	0	21	1	76	0.88
48227284--48227436	71	2.2	69	87	7	215	58	3	0	37	1.19
48227407--48227445	20	2.0	19	95	5	69	76	0	0	23	0.78
48227407--48227447	9	4.3	9	88	11	64	75	0	0	24	0.80
48229400--48229439	21	1.9	21	94	0	71	30	0	7	62	1.23
48230903--48231003	11	8.9	11	73	17	82	43	0	2	53	1.16
48230901--48230978	5	14.4	5	76	17	59	43	0	2	53	1.14
48230903--48231004	6	17.8	6	72	18	76	44	0	2	52	1.16
48230918--48230978	27	2.3	27	82	5	79	42	0	3	54	1.17
48230903--48231003	44	2.2	46	75	5	98	43	0	2	53	1.16
48230889--48230978	17	5.4	16	84	10	101	42	1	3	53	1.24
48232882--48232941	29	2.0	29	83	3	75	41	21	8	28	1.82
48232940--48233253	59	5.4	59	89	3	386	33	31	3	31	1.74
48232965--48233253	117	2.5	117	88	3	413	33	32	2	31	1.72
48232965--48233244	59	4.8	58	91	2	402	34	31	2	31	1.70
48234577--48234626	21	2.4	21	100	0	100	30	8	20	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48240299--48240348	25	2.0	25	100	0	100	40	4	12	44	1.60
48242974--48243034	23	2.7	23	84	5	79	37	16	18	27	1.92
48243756--48243781	11	2.4	11	100	0	52	15	0	19	65	1.27
48247970--48248008	20	1.9	20	84	5	51	58	0	0	41	0.98
48253887--48254351	246	1.9	246	83	4	616	31	13	26	28	1.94
48258185--48258254	30	2.3	31	83	9	83	48	2	8	40	1.49
48258859--48258894	19	1.9	18	88	5	54	38	0	2	58	1.13
48265384--48265422	17	2.4	15	84	16	51	58	7	0	33	1.26
48265751--48265787	18	2.1	18	89	0	56	27	8	13	51	1.69
48266250--48266283	15	2.2	16	90	10	54	79	0	0	20	0.73
48270045--48270106	20	3.3	19	69	17	58	35	1	4	58	1.29
48275738--48276103	30	12.2	29	77	10	222	38	20	3	37	1.69
48275738--48276140	60	6.8	59	79	9	304	38	21	3	37	1.69
48275778--48276104	90	3.6	89	80	5	331	38	19	3	38	1.67
48275989--48276131	30	4.9	28	76	10	119	36	18	3	41	1.68
48276541--48276717	98	1.8	97	81	7	225	29	17	14	38	1.90
48281713--48281797	15	5.6	15	73	13	75	83	3	11	1	0.83
48281721--48281795	16	4.5	17	79	14	84	82	4	12	1	0.86
48281713--48281797	25	3.4	24	82	14	100	83	3	11	1	0.83
48281713--48281797	37	2.2	37	83	8	100	83	3	11	1	0.83
48281715--48281792	33	2.5	31	81	10	88	83	3	11	1	0.84
48283102--48283267	51	3.3	51	71	11	151	42	17	24	15	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48283001--48283661	101	6.6	100	83	2	804	39	19	27	14	1.90
48283001--48283661	201	3.3	201	87	0	919	39	19	27	14	1.90
48283666--48283937	92	3.0	92	90	1	413	35	15	16	33	1.90
48283881--48283989	54	2.0	54	96	0	200	33	16	17	33	1.92
48283955--48284107	40	3.6	39	67	24	103	32	14	16	36	1.89
48283790--48284080	144	2.0	146	93	1	496	34	15	16	34	1.90
48284004--48284159	52	3.2	52	67	26	160	35	15	16	32	1.90
48283935--48284213	92	3.1	91	92	3	436	34	15	16	32	1.91
48283712--48284170	236	1.9	236	91	2	753	34	15	16	33	1.91
48284467--48284572	11	9.1	11	71	18	65	43	0	1	53	1.18
48284467--48284571	17	6.3	17	83	4	124	43	0	1	53	1.18
48284467--48284555	6	15.0	6	74	15	78	42	1	2	53	1.20
48284467--48284561	49	1.9	49	86	0	136	42	1	2	54	1.19
48284824--48284986	59	2.8	59	83	3	186	41	19	1	38	1.62
48284795--48284959	30	5.6	29	82	7	172	42	16	1	39	1.59
48284795--48284998	30	6.9	28	75	11	149	40	19	1	37	1.63
48284795--48285000	60	3.5	59	80	5	193	40	19	1	37	1.63
48284953--48285323	58	6.4	58	79	5	347	30	28	3	36	1.75
48284981--48285258	29	9.4	29	67	18	130	30	26	3	39	1.72
48284953--48285316	117	3.1	117	79	8	386	30	28	3	37	1.74
48287281--48287344	23	2.8	23	83	4	76	42	18	10	28	1.84
48287298--48287367	23	3.0	24	78	4	88	44	17	11	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48293666--48293710	21	2.1	21	91	0	72	31	0	4	64	1.13
48293981--48294042	29	2.1	31	81	6	74	51	11	1	35	1.47
48295056--48295234	89	2.0	89	93	0	304	36	7	14	40	1.75
48300022--48300081	31	2.0	30	90	3	93	45	8	10	36	1.68
48300581--48300619	19	2.2	18	82	13	53	66	10	12	10	1.44
48303144--48303245	28	3.4	30	82	6	136	51	0	1	46	1.12
48303144--48303252	30	3.7	29	80	11	132	50	0	1	47	1.11
48315200--48315228	9	3.2	9	100	0	58	48	0	0	51	1.00
48318334--48318404	31	2.3	31	82	2	90	43	12	11	32	1.78
48320544--48320719	97	1.8	97	82	4	230	39	12	18	30	1.87
48320954--48321041	28	3.1	28	91	0	140	27	14	31	26	1.95
48320954--48321103	28	5.2	29	80	8	139	29	12	30	27	1.93
48321023--48321304	59	4.9	57	80	5	264	34	6	26	32	1.83
48321000--48321244	58	4.2	58	85	4	300	32	7	26	33	1.85
48321058--48321219	28	5.6	29	67	16	86	33	6	26	33	1.81
48321145--48321458	29	10.8	30	74	9	206	38	3	22	35	1.71
48321140--48321458	145	2.2	143	77	10	328	38	3	23	35	1.72
48330090--48330146	27	2.1	27	100	0	114	28	14	10	47	1.76
48330131--48330196	23	2.9	23	72	4	62	42	16	10	30	1.82
48331973--48332014	20	2.2	19	86	4	57	71	0	0	28	0.86
48334736--48335188	245	1.8	245	83	6	594	32	13	26	28	1.93
48337874--48337954	30	2.7	32	81	9	91	45	4	17	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48337959--48338024	27	2.3	30	85	12	86	33	1	28	36	1.67
48338006--48338256	30	8.4	29	79	9	222	43	1	18	35	1.62
48338006--48338256	59	4.2	59	79	10	244	43	1	18	35	1.62
48338006--48338286	89	3.1	89	80	8	286	43	2	18	35	1.63
48338060--48338295	119	2.0	118	81	7	282	44	3	16	35	1.65
48344863--48344898	6	6.0	6	100	0	72	0	0	83	16	0.65
48346100--48346155	7	8.0	7	78	11	53	28	16	1	53	1.53
48356821--48356849	5	5.8	5	100	0	58	41	0	20	37	1.53
48357916--48357965	24	2.0	24	84	7	64	50	2	0	48	1.12
48357942--48357980	19	2.1	19	85	0	51	58	5	0	35	1.20
48358252--48358308	21	2.8	19	79	12	60	70	3	1	24	1.13
48360194--48360351	63	2.4	64	87	9	223	58	2	0	38	1.16
48360194--48360351	67	2.4	65	87	8	212	58	2	0	38	1.16
48360322--48360365	22	2.0	22	82	8	54	75	0	2	22	0.92
48360885--48362013	80	14.2	80	94	0	1910	24	19	24	31	1.98
48362101--48362246	50	2.9	50	88	0	211	21	25	19	34	1.96
48363176--48363225	7	6.6	7	78	17	55	0	18	2	80	0.82
48363169--48363216	19	2.6	18	84	12	62	0	20	2	77	0.88
48363178--48363223	8	5.9	8	80	12	51	0	19	2	78	0.86
48363176--48363226	15	3.2	16	84	10	70	0	17	1	80	0.81
48363170--48363244	9	8.6	8	74	20	62	4	14	1	80	0.93
48368297--48368328	8	4.1	8	92	8	57	75	0	0	25	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48368297--48368336	15	2.8	14	85	14	55	72	0	0	27	0.85
48368236--48368392	67	2.3	65	85	11	194	57	2	0	39	1.17
48371207--48371266	26	2.4	24	79	15	68	38	3	1	56	1.26
48371226--48371274	24	2.0	26	84	8	66	36	2	2	59	1.21
48377244--48377289	21	2.2	21	84	0	56	30	4	21	43	1.72
48386787--48386838	9	5.4	9	76	19	52	71	1	3	23	1.13
48386787--48386838	20	2.8	18	83	13	61	71	1	3	23	1.13
48386841--48386916	38	2.0	38	84	5	100	52	0	13	34	1.40
48387352--48387386	9	3.8	9	85	7	52	60	2	2	34	1.26
48407845--48409178	304	4.4	306	79	5	1331	35	14	14	35	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182