genome.fa.s9.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  150  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46222740--46222766	2	13.5	2	100	0	54	51	0	48	0	1.00
46223282--46223316	3	11.7	3	93	0	61	34	28	0	37	1.58
46229444--46229481	18	2.1	18	95	0	67	60	21	2	15	1.47
46229688--46229725	21	1.9	21	89	10	62	31	2	5	60	1.33
46229811--46229861	23	2.1	25	86	13	72	23	11	3	60	1.47
46230703--46230747	19	2.4	18	85	3	54	44	0	0	55	0.99
46233926--46233972	23	2.0	23	87	0	67	44	0	14	40	1.46
46237242--46237270	14	2.0	15	93	6	51	27	6	20	44	1.77
46237933--46238478	49	11.2	48	71	10	399	18	25	17	38	1.93
46237881--46238487	98	6.2	98	85	2	799	18	25	17	38	1.93
46240288--46240323	4	9.8	4	82	17	51	0	19	0	80	0.71
46240286--46240330	7	6.4	7	87	12	58	0	15	0	84	0.62
46240288--46240323	10	3.2	12	81	18	51	0	19	0	80	0.71
46240285--46240328	18	2.5	17	86	13	63	0	18	0	81	0.68
46240292--46240328	17	2.2	17	90	9	58	0	16	0	83	0.64
46246313--46246349	11	3.4	11	88	0	56	10	21	43	24	1.84
46246313--46246357	22	2.0	22	82	0	54	11	20	42	26	1.85
46248347--46248411	30	2.2	30	94	0	112	23	4	15	56	1.57
46249834--46249858	6	4.2	6	100	0	50	36	32	0	32	1.58
46250539--46250595	23	2.5	23	85	0	87	31	17	21	29	1.96
46252006--46252042	13	2.6	15	83	12	51	45	0	0	54	1.00
46254582--46254621	14	2.9	14	92	0	62	0	90	0	10	0.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46254582--46254622	17	2.3	17	91	8	64	0	90	0	9	0.46
46254582--46254622	16	2.6	16	92	0	64	0	90	0	9	0.46
46255259--46255332	40	1.9	37	100	0	121	35	18	21	24	1.96
46261606--46261644	19	2.1	19	95	0	69	33	10	23	33	1.88
46266390--46266425	19	1.9	19	88	5	56	52	2	2	41	1.30
46271237--46271273	16	2.3	16	90	0	56	29	8	10	51	1.65
46271776--46271829	20	2.7	18	76	20	54	61	1	3	33	1.25
46273195--46273231	2	19.0	2	94	5	67	51	0	0	48	1.00
46275934--46275971	19	2.0	20	84	5	51	52	0	2	44	1.14
46276265--46276334	31	2.2	32	87	2	97	45	11	8	34	1.71
46277229--46277323	44	2.2	44	96	1	174	36	12	6	44	1.68
46281447--46281752	30	10.1	29	75	11	231	35	2	26	35	1.69
46281447--46281752	60	5.0	61	78	9	297	35	2	26	35	1.69
46283397--46284019	41	15.0	41	83	4	631	31	17	18	33	1.94
46283398--46284014	125	4.9	123	82	5	628	31	17	17	33	1.94
46284323--46284457	49	2.8	49	77	4	146	20	35	13	30	1.91
46284274--46284502	98	2.3	98	81	3	264	19	31	16	33	1.94
46288209--46288249	12	3.4	12	86	0	55	12	31	14	41	1.83
46288347--46288590	121	2.0	121	99	0	479	40	11	16	32	1.83
46290791--46290997	29	7.0	30	84	7	217	35	2	25	36	1.69
46294962--46295053	26	3.5	25	72	21	71	45	7	3	43	1.48
46295196--46295256	32	1.9	32	96	0	113	26	16	9	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46295202--46295274	29	2.4	31	84	6	87	27	16	10	45	1.81
46295438--46295520	32	2.9	26	69	23	69	51	14	15	18	1.76
46295438--46295566	57	2.2	59	81	2	145	50	12	14	22	1.76
46297918--46297988	29	2.4	29	100	0	142	49	12	11	26	1.74
46298542--46298606	18	3.6	17	75	8	58	32	3	6	58	1.38
46307537--46307576	17	2.4	16	84	8	53	27	10	7	55	1.60
46311074--46311098	5	5.0	5	100	0	50	80	0	0	20	0.72
46313346--46313413	36	1.9	35	88	8	102	33	2	4	58	1.33
46313346--46313424	11	6.8	11	71	16	52	32	2	3	60	1.28
46313659--46313683	13	1.9	13	100	0	50	40	36	8	16	1.77
46323770--46323831	31	2.0	31	87	6	90	33	11	9	45	1.73
46324773--46324803	15	2.1	15	93	0	53	67	0	9	22	1.19
46332573--46332615	14	3.0	14	79	3	50	69	2	0	27	1.00
46335694--46335733	17	2.4	17	82	0	53	57	7	2	32	1.40
46341144--46341190	13	3.4	14	82	14	53	61	2	0	36	1.08
46341154--46341196	13	3.2	14	80	12	54	62	0	2	34	1.08
46345093--46345123	15	2.1	15	94	5	55	6	25	12	54	1.62
46346677--46346727	22	2.3	20	81	15	57	27	0	7	64	1.21
46355032--46355076	20	2.2	20	88	7	65	68	6	0	24	1.13
46356799--46356830	6	5.3	6	100	0	64	46	18	15	18	1.84
46357439--46357479	18	2.2	19	83	12	50	26	4	4	63	1.35
46360388--46360521	39	3.4	39	74	4	126	23	15	20	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46360350--46360524	78	2.2	78	80	0	197	23	17	21	38	1.93
46360813--46360949	64	2.2	63	86	4	186	23	27	20	29	1.99
46365825--46366085	30	8.9	29	73	10	174	37	21	4	36	1.75
46365833--46366082	117	2.1	116	81	5	297	36	22	4	36	1.74
46368903--46368933	2	15.5	2	100	0	62	51	48	0	0	1.00
46369584--46369661	20	3.8	20	71	20	54	26	0	26	46	1.53
46369618--46369654	14	2.6	14	91	0	56	27	0	27	45	1.54
46374115--46374229	30	3.5	35	71	22	97	58	2	0	39	1.12
46374208--46374246	15	2.4	17	87	8	55	58	0	5	35	1.20
46375154--46375230	37	2.1	36	83	9	93	35	10	0	54	1.35
46381105--46381146	20	2.1	20	100	0	84	50	19	16	14	1.79
46386008--46386137	43	3.0	43	85	3	174	31	27	15	25	1.96
46392764--46393079	41	7.7	41	84	1	305	22	29	18	30	1.97
46392788--46393059	123	2.2	123	83	0	337	22	29	19	28	1.98
46397847--46397905	29	2.0	29	83	9	75	28	6	13	50	1.67
46398048--46398104	29	1.9	30	89	3	89	45	8	8	36	1.66
46399442--46399489	21	2.3	22	85	7	64	39	0	10	50	1.37
46400223--46400395	85	2.0	85	94	0	301	39	15	10	34	1.82
46403440--46403481	2	21.0	2	100	0	84	50	0	0	50	1.00
46408350--46408384	5	7.0	5	100	0	70	40	0	0	60	0.97
46408350--46408409	10	6.3	10	84	9	63	36	0	0	63	0.95
46408378--46408410	16	1.9	18	88	11	52	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46418014--46418050	18	2.1	18	94	0	65	29	5	10	54	1.57
46421499--46421527	14	2.1	14	100	0	58	27	0	6	65	1.18
46427793--46427850	26	2.2	26	87	6	82	27	24	8	39	1.84
46434866--46434902	2	18.5	2	100	0	74	51	0	0	48	1.00
46436938--46436972	18	1.9	18	88	0	52	54	0	0	45	0.99
46436933--46436976	21	2.1	21	87	4	63	50	0	0	50	1.00
46458712--46459172	153	3.0	153	97	0	861	31	20	16	30	1.95
46460940--46460997	25	2.3	25	90	0	98	65	10	13	10	1.47
46464479--46464514	1	36.0	1	100	0	72	0	0	100	0	0.00
46464861--46464907	23	2.0	23	87	0	67	23	12	8	55	1.64
46466060--46466154	45	2.1	46	96	4	174	36	20	25	17	1.94
46469885--46469928	22	2.0	23	90	4	72	56	2	9	31	1.43
46479195--46479240	24	1.9	24	81	0	56	47	0	39	13	1.42
46479197--46479298	39	2.6	39	84	0	105	43	2	42	11	1.56
46479197--46479264	33	2.1	33	82	0	82	45	1	39	13	1.52
46481958--46482048	46	1.9	47	82	8	114	30	12	20	36	1.89
46496533--46496854	41	7.9	41	83	2	324	35	18	27	18	1.94
46496533--46496828	123	2.4	122	85	2	367	34	17	29	18	1.94
46500802--46501075	43	6.3	43	82	7	284	25	18	26	29	1.98
46500913--46501047	42	2.9	47	82	9	154	25	19	27	28	1.99
46507532--46507594	24	2.6	24	87	0	90	50	9	14	25	1.72
46513347--46513388	17	2.4	18	84	11	61	38	0	7	54	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46513359--46513422	17	3.8	17	71	17	53	46	3	3	46	1.34
46514238--46514289	20	2.5	21	84	9	54	63	3	0	32	1.12
46515322--46515408	29	3.0	28	83	11	95	37	26	3	32	1.73
46515358--46515643	59	4.8	59	81	11	314	34	28	2	34	1.69
46515454--46515547	29	3.2	29	66	19	86	34	28	3	34	1.73
46515602--46515737	28	4.6	28	74	14	105	36	27	0	36	1.62
46533037--46533062	13	2.0	13	100	0	52	30	7	30	30	1.85
46533809--46533852	19	2.3	18	84	7	52	40	0	2	56	1.11
46533809--46533860	19	2.8	18	79	5	50	38	0	1	59	1.08
46536017--46536089	4	18.2	4	97	0	137	26	0	23	50	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182