genome.fa.s9.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  161  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49125380--49125506	43	3.0	42	88	3	191	29	23	29	17	1.97
49127586--49128002	210	2.0	209	83	3	534	33	14	19	32	1.92
49131201--49131286	40	2.2	40	93	2	156	38	16	13	31	1.88
49141561--49141623	25	2.6	25	75	10	67	44	0	7	47	1.32
49142396--49142431	12	3.1	12	96	4	65	25	8	25	41	1.83
49143082--49143564	210	2.3	210	91	1	763	31	14	21	32	1.93
49151956--49152002	6	7.8	6	97	0	76	17	10	0	72	1.12
49152915--49152948	13	2.6	13	85	0	50	73	0	11	14	1.10
49152927--49152969	18	2.3	19	88	4	61	72	0	16	11	1.13
49154034--49154079	25	1.9	25	86	8	69	32	4	6	56	1.45
49160429--49160486	26	2.2	26	84	0	71	55	5	29	10	1.55
49163215--49163272	28	2.1	28	83	6	73	32	1	13	51	1.51
49163850--49163880	6	5.2	6	100	0	62	16	32	35	16	1.91
49165837--49165895	29	1.9	32	86	10	88	45	3	0	50	1.18
49165999--49166024	2	13.0	2	100	0	52	50	0	0	50	1.00
49166334--49166367	17	2.0	17	94	0	59	52	2	0	44	1.16
49169190--49169248	25	2.4	25	88	5	84	27	1	6	64	1.28
49169215--49169278	28	2.3	28	81	5	85	21	4	6	67	1.32
49170168--49170232	18	3.7	18	81	2	69	27	26	23	23	2.00
49170236--49170738	263	1.9	264	91	2	823	39	16	16	27	1.90
49175496--49175556	18	3.4	18	71	8	61	21	18	27	32	1.96
49175529--49175576	18	2.8	17	81	6	69	20	22	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49175492--49175576	36	2.4	35	86	5	118	20	18	29	31	1.96
49175828--49175882	18	3.1	18	84	5	67	29	27	23	20	1.99
49178417--49178474	21	2.8	21	80	14	59	41	8	27	22	1.83
49179412--49179462	18	2.9	18	79	2	59	17	23	29	29	1.97
49179617--49180044	214	2.0	214	93	0	741	33	16	12	37	1.86
49180351--49180386	18	2.0	18	88	0	54	30	16	22	30	1.96
49180529--49180590	29	2.2	29	82	8	74	64	6	6	22	1.40
49185676--49185727	27	1.9	27	92	0	86	19	26	30	23	1.98
49188760--49189356	210	2.8	209	87	3	797	31	14	21	31	1.93
49190552--49190743	66	2.9	66	94	0	339	36	21	29	13	1.91
49200915--49200953	17	2.3	17	86	0	51	69	0	2	28	1.02
49201163--49201217	22	2.3	25	78	12	62	9	18	0	72	1.10
49202184--49202208	12	2.1	12	100	0	50	60	0	0	40	0.97
49204279--49204316	14	2.7	14	84	15	60	34	0	2	63	1.09
49204769--49204813	20	2.2	21	96	4	83	42	4	15	37	1.67
49209428--49209456	9	3.2	9	100	0	58	10	20	10	58	1.60
49218829--49218866	11	3.5	11	80	20	53	0	47	23	28	1.52
49218815--49218867	21	2.5	21	93	0	88	0	47	20	32	1.51
49218863--49219010	66	2.2	66	86	2	208	15	23	15	45	1.84
49224415--49224870	26	18.0	26	63	20	148	45	5	2	47	1.38
49224433--49224882	49	8.9	49	73	16	357	44	5	2	47	1.39
49224475--49224554	18	4.8	18	72	18	75	43	3	1	51	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49224549--49224601	18	2.8	18	78	18	54	47	5	1	45	1.37
49224676--49225047	18	21.6	18	65	17	103	45	4	2	47	1.35
49224686--49225451	49	15.1	49	78	12	373	45	6	1	46	1.36
49224420--49225374	258	3.8	256	82	9	1097	45	6	1	46	1.37
49224962--49225069	31	3.3	31	76	12	117	47	2	0	50	1.15
49224940--49225445	67	7.8	67	66	15	245	45	6	0	47	1.31
49224682--49225439	325	2.3	329	87	6	1036	45	6	1	46	1.35
49224983--49225426	18	27.1	18	64	30	105	45	7	0	47	1.30
49225126--49225408	31	10.4	28	65	26	128	46	7	0	45	1.31
49225244--49225327	32	2.7	30	87	10	123	46	8	0	45	1.33
49225336--49225408	32	2.3	31	95	4	137	49	5	0	45	1.25
49225501--49225552	18	2.8	18	79	2	68	50	0	1	48	1.12
49230065--49230615	41	13.4	41	81	6	474	23	26	25	24	2.00
49232661--49232725	30	2.2	31	86	5	89	44	4	12	38	1.63
49235744--49235806	25	2.6	25	75	10	67	44	0	7	47	1.32
49248789--49248851	25	2.6	25	75	10	67	44	0	7	47	1.32
49250335--49250817	210	2.3	210	91	1	754	31	14	21	32	1.93
49254010--49254049	16	2.3	19	83	12	50	27	2	2	67	1.16
49261417--49261544	23	5.4	23	82	10	116	45	19	21	14	1.85
49261415--49261565	23	6.4	23	77	7	97	45	18	22	13	1.85
49261417--49261544	48	2.7	48	84	4	154	45	19	21	14	1.85
49264273--49264328	28	2.0	28	100	0	112	28	21	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49264944--49264986	20	2.2	20	87	4	61	74	0	6	18	1.04
49266784--49266812	14	2.0	15	93	6	51	41	13	3	41	1.62
49282185--49282807	210	3.0	209	89	2	867	32	14	20	32	1.93
49284303--49284338	18	1.9	19	88	5	56	36	2	0	61	1.11
49286552--49286796	43	5.7	44	87	3	331	21	30	21	26	1.99
49286552--49286793	85	2.8	85	86	3	335	21	30	21	26	1.98
49286555--49286796	128	1.9	130	88	3	373	21	30	21	26	1.98
49287093--49287130	11	3.5	11	80	20	53	0	47	23	28	1.52
49287089--49287131	21	2.0	21	100	0	86	0	48	23	27	1.51
49287121--49287273	65	2.3	66	89	2	236	15	24	17	43	1.87
49291605--49291668	33	2.0	32	93	3	110	43	6	6	43	1.54
49291599--49291675	33	2.3	32	84	4	109	46	5	5	42	1.48
49291815--49291877	18	3.5	18	75	0	63	52	6	0	41	1.27
49291709--49292407	112	6.2	112	95	0	1222	47	5	2	43	1.40
49292141--49292238	44	2.1	46	81	10	121	52	3	1	43	1.23
49292343--49292476	46	3.1	45	66	16	120	48	5	4	41	1.48
49292385--49292436	16	3.4	15	84	10	70	51	0	0	48	1.00
49292197--49292599	196	2.1	196	97	0	752	47	4	3	43	1.42
49292080--49292711	308	2.0	308	93	0	1084	47	4	3	43	1.41
49291968--49292747	420	1.9	422	91	1	1296	47	4	3	43	1.41
49292365--49292785	112	3.8	110	80	11	400	47	4	4	43	1.41
49292304--49292487	84	2.2	84	92	1	296	48	4	3	42	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49292469--49292512	18	2.4	19	81	11	56	43	0	6	50	1.29
49292393--49292801	54	7.5	54	68	23	229	46	4	4	44	1.41
49292571--49292643	18	4.1	18	76	1	67	50	2	1	45	1.24
49292625--49292784	46	3.2	47	70	24	121	46	5	4	44	1.45
49292197--49292658	196	2.4	196	91	2	639	47	4	3	44	1.41
49292683--49292717	18	1.9	18	88	0	52	57	2	0	40	1.14
49295108--49295140	13	2.5	13	95	0	57	33	3	54	9	1.47
49295253--49295465	41	5.2	41	79	5	191	22	26	26	24	2.00
49295407--49295483	40	1.9	40	91	0	127	22	24	25	27	2.00
49300435--49300463	12	2.4	12	100	0	58	13	6	10	68	1.37
49303564--49303607	12	3.7	12	90	0	70	25	6	0	68	1.14
49303531--49303605	32	2.4	31	82	8	89	21	5	5	68	1.30
49303564--49303607	4	11.0	4	85	0	61	25	6	0	68	1.14
49304499--49304578	34	2.4	34	97	0	151	26	27	20	26	1.99
49307962--49308028	18	3.9	16	83	15	73	68	2	2	25	1.18
49307972--49308028	24	2.3	26	82	14	75	70	3	3	22	1.18
49307962--49308028	8	8.0	8	74	21	57	68	2	2	25	1.18
49308674--49308705	10	3.2	10	100	0	64	31	0	0	68	0.90
49308674--49308711	20	1.9	20	88	0	58	34	2	0	63	1.09
49312204--49312233	5	5.8	5	96	4	51	20	3	0	76	0.92
49321312--49321370	24	2.5	24	81	10	59	37	5	0	57	1.21
49321602--49321657	16	3.5	16	83	11	62	26	26	5	41	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49329950--49329989	16	2.3	19	83	12	50	27	2	2	67	1.16
49334317--49334370	24	2.2	24	80	6	65	70	11	9	9	1.34
49337159--49337287	23	5.5	23	87	1	159	44	21	20	12	1.84
49337112--49337287	69	2.5	68	84	9	205	44	21	21	12	1.84
49338182--49338225	21	2.4	17	85	14	52	4	34	2	59	1.30
49340265--49340320	28	2.0	28	89	0	85	32	19	21	26	1.97
49345884--49345960	36	2.1	36	100	0	154	32	10	31	25	1.90
49355729--49357391	210	7.9	210	91	1	2613	29	16	21	31	1.96
49360628--49360667	16	2.3	19	83	12	50	27	2	2	67	1.16
49362928--49363030	54	1.9	54	93	0	179	28	24	20	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182