genome.fa.s9.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  75  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23769240--23769294	23	2.3	23	84	3	65	18	1	30	49	1.58
23769263--23769380	30	4.1	30	69	13	86	16	0	32	50	1.52
23769329--23769375	13	3.2	15	76	14	53	14	0	23	61	1.33
23769953--23770027	11	6.8	11	78	15	84	49	0	0	50	1.00
23770392--23770469	19	4.0	20	76	14	74	35	1	6	56	1.33
23770400--23770463	20	3.4	19	74	6	67	35	1	6	56	1.34
23772295--23772387	26	3.6	26	86	0	123	27	24	19	27	1.99
23772295--23772445	52	2.9	52	78	5	137	31	23	19	25	1.98
23772352--23772445	26	3.6	26	80	8	86	34	25	18	22	1.96
23772402--23772480	27	2.9	27	88	0	113	36	22	16	24	1.94
23776999--23777308	41	7.5	41	88	2	381	27	24	11	37	1.90
23779585--23779657	30	2.4	30	93	4	121	43	1	1	53	1.17
23782617--23782654	4	9.5	4	94	0	67	50	21	0	28	1.49
23786263--23786312	24	2.1	23	81	3	55	66	12	14	8	1.45
23801254--23801283	14	2.1	14	93	0	51	70	3	6	20	1.25
23801274--23801306	11	3.0	11	90	0	57	63	3	0	33	1.10
23802837--23802886	22	2.3	22	86	3	66	74	0	6	20	1.03
23815692--23815810	59	2.0	59	85	3	159	32	15	6	44	1.73
23836058--23836109	22	2.4	22	90	0	77	17	7	19	55	1.65
23838168--23838243	28	2.7	28	97	0	143	26	26	23	23	2.00
23838259--23838337	26	3.0	25	85	3	95	22	24	22	30	1.99
23838272--23838348	26	2.9	26	88	1	109	23	22	23	31	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23842445--23842935	219	2.2	223	81	6	552	33	11	15	39	1.84
23842775--23842896	62	2.0	62	91	0	199	32	13	18	34	1.91
23842553--23843061	219	2.3	219	80	7	548	35	11	15	38	1.83
23842838--23843205	158	2.3	161	83	3	440	34	11	13	40	1.81
23843605--23843966	157	2.3	155	82	7	410	32	12	14	40	1.83
23844171--23844526	161	2.2	158	78	8	371	32	12	13	41	1.82
23844333--23845228	222	4.1	219	79	8	922	34	9	14	41	1.78
23844687--23844813	63	2.0	62	84	4	166	38	10	14	37	1.80
23844318--23845223	442	2.1	439	83	6	1129	34	10	14	41	1.79
23844331--23845361	221	4.7	217	77	9	876	34	9	13	41	1.78
23846844--23846902	19	3.0	19	85	5	73	25	15	13	45	1.82
23846849--23846908	21	3.0	21	82	4	70	26	18	13	41	1.87
23847498--23847561	31	2.1	31	90	0	101	17	21	31	29	1.96
23847506--23847607	31	3.3	31	80	0	105	24	24	28	22	1.99
23847822--23847958	14	9.4	14	72	12	62	25	10	24	39	1.88
23848691--23848816	62	2.0	62	80	6	139	38	16	11	32	1.85
23849650--23849699	3	16.7	3	91	0	82	0	28	4	68	1.08
23850128--23850620	148	3.4	141	81	12	566	40	3	10	45	1.55
23851205--23851256	21	2.4	21	81	12	61	21	5	1	71	1.17
23864132--23864746	42	14.5	42	85	3	766	20	19	23	36	1.95
23864585--23864767	84	2.2	84	84	0	231	21	16	24	38	1.93
23865712--23866072	51	7.3	50	66	18	155	40	4	9	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23865610--23866111	145	3.4	147	87	4	706	40	4	10	44	1.60
23867148--23867623	239	2.0	239	95	0	862	35	7	16	40	1.76
23872164--23872208	10	4.2	11	81	13	58	0	20	0	80	0.72
23883805--23883868	20	3.2	20	77	6	67	31	15	26	26	1.96
23892855--23892941	44	2.0	43	84	2	111	22	3	20	52	1.61
23893928--23893960	11	2.8	12	86	4	50	36	3	12	48	1.56
23894874--23894943	37	1.9	35	86	11	97	40	1	4	54	1.29
23894876--23895067	62	3.0	60	71	19	158	38	2	5	53	1.36
23895021--23895078	16	3.6	15	77	11	53	39	3	1	55	1.27
23895966--23896017	26	2.1	24	82	7	59	38	0	5	55	1.24
23902331--23902406	37	2.1	36	85	11	102	40	1	2	55	1.22
23902331--23902406	12	6.8	11	72	19	52	40	1	2	55	1.22
23902332--23902438	20	5.8	18	70	20	69	42	1	2	53	1.26
23902477--23902539	17	3.8	17	71	12	58	49	1	1	47	1.20
23903077--23903543	232	2.0	232	99	0	916	49	9	23	17	1.75
23903602--23903631	14	2.1	14	93	0	51	73	0	3	23	0.98
23904361--23904394	4	8.0	4	87	12	50	0	29	0	70	0.87
23905781--23905884	55	1.9	55	88	4	156	27	5	10	55	1.56
23905772--23905884	26	4.2	26	77	10	102	27	5	9	57	1.52
23914250--23914510	71	3.7	72	85	1	303	26	17	20	35	1.95
23918415--23918463	3	16.3	3	100	0	98	0	34	0	65	0.93
23918735--23918766	16	2.0	16	93	0	55	53	3	18	25	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23919225--23919414	71	2.7	71	85	1	265	23	16	25	35	1.95
23921457--23921516	18	3.4	18	76	4	59	46	16	18	18	1.84
23921563--23921595	12	2.6	13	85	4	50	69	12	3	15	1.30
23928377--23928410	18	1.9	17	88	5	50	23	11	8	55	1.63
23937369--23937407	21	1.9	21	89	5	62	41	15	15	28	1.87
23937404--23937428	13	1.9	13	100	0	50	48	12	16	24	1.79
23938839--23938905	33	1.9	33	82	14	82	0	35	2	61	1.12
23948147--23948200	21	2.6	20	77	8	54	33	14	20	31	1.93
23953054--23953091	3	12.7	3	94	0	67	34	2	31	31	1.72
23953090--23953143	3	18.0	3	96	0	99	64	0	1	33	1.04
23953159--23953192	18	1.9	17	94	5	59	55	8	5	29	1.54
23953308--23953346	5	7.8	5	100	0	78	82	0	0	17	0.68
23953305--23953374	10	7.2	9	83	12	70	80	1	1	17	0.87
23960607--23960686	23	3.5	23	79	3	90	41	15	13	30	1.85
23960607--23960697	23	4.0	23	79	2	76	42	14	13	29	1.83
23967394--23967444	26	2.0	26	88	7	77	47	17	19	15	1.83
23971708--23972014	30	10.3	30	79	7	297	36	1	24	37	1.64
23971811--23972014	91	2.2	90	86	5	268	38	0	23	37	1.61
23973987--23974610	99	6.3	99	81	5	609	15	33	18	33	1.92
23973987--23974569	148	3.9	147	81	4	602	15	32	18	33	1.92
23974002--23974567	247	2.3	248	86	1	771	15	33	18	33	1.92
23974001--23974610	49	12.3	49	77	8	385	15	33	17	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23983149--23983214	28	2.3	29	89	2	98	45	9	16	28	1.78
23983206--23983364	29	5.4	29	72	13	112	32	3	28	35	1.73
23983206--23983392	59	3.1	60	78	9	170	33	3	28	35	1.73
23983281--23983397	30	3.9	30	85	4	148	34	2	26	36	1.70
23985092--23985125	17	1.9	18	88	5	52	41	8	0	50	1.34
23986230--23986263	17	2.1	16	88	5	50	79	2	2	14	0.97
23988799--23988867	26	2.7	26	86	4	86	27	28	18	24	1.98
23988829--23989020	25	7.5	25	82	5	197	34	26	16	22	1.95
23988829--23989020	75	2.5	77	82	10	234	34	26	16	22	1.95
23994280--23994330	24	2.2	23	83	16	61	66	1	9	21	1.31
23994740--23994985	42	5.9	42	83	5	295	36	23	18	21	1.95
23994740--23994985	123	2.0	125	86	5	347	36	23	18	21	1.95
23994740--23994985	81	3.0	84	83	3	318	36	23	18	21	1.95
23995379--23995416	20	2.0	20	89	5	60	2	7	2	86	0.74
23995373--23995411	18	2.2	18	85	0	51	5	7	2	84	0.84
23995650--23995675	9	2.9	9	100	0	52	0	11	0	88	0.52
23999995--24000036	18	2.4	18	84	4	59	57	11	9	21	1.63
24013117--24013147	4	7.8	4	92	0	53	48	0	29	22	1.51
24016984--24017043	30	2.0	30	100	0	120	46	10	16	26	1.78
24017852--24018104	50	5.1	50	67	15	119	46	8	1	43	1.43
24017709--24018349	149	4.4	148	83	6	731	44	8	3	43	1.51
24020842--24020892	21	2.4	21	93	0	84	25	17	13	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24021617--24021716	26	3.9	25	77	11	80	35	23	18	24	1.96
24021644--24021824	27	6.9	27	77	8	151	36	22	16	25	1.94
24021644--24021820	54	3.4	53	80	6	184	35	22	16	25	1.95
24030492--24030549	16	3.5	17	79	6	66	50	22	0	27	1.50
24031410--24031542	33	4.0	33	82	5	162	27	3	48	21	1.65
24031431--24031571	66	2.1	66	85	2	185	29	3	45	21	1.68
24035960--24035995	15	2.4	15	90	0	54	30	8	22	38	1.83
24055825--24055854	15	2.0	15	100	0	60	33	33	26	6	1.83
24057183--24060667	869	4.0	869	98	0	6790	31	23	15	29	1.95
24066827--24066856	6	5.0	6	91	0	51	33	33	3	30	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182