genome.fa.s9.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  98  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32176790--32176907	29	4.1	29	74	14	91	32	5	5	56	1.45
32179574--32179618	22	2.0	22	83	8	56	35	6	8	48	1.61
32181129--32181180	5	9.8	5	78	12	50	15	1	5	76	1.05
32183870--32184023	28	5.3	29	72	12	129	26	17	23	32	1.97
32183870--32184058	58	3.3	57	83	5	229	27	16	22	33	1.96
32187016--32187078	30	2.1	30	85	5	83	34	22	15	26	1.94
32190295--32190339	12	3.8	12	84	0	63	64	0	35	0	0.94
32190295--32190342	24	2.0	24	91	0	78	66	0	33	0	0.92
32193828--32193877	15	3.2	15	75	10	55	24	6	8	62	1.46
32193816--32193877	32	1.9	32	93	0	106	22	4	8	64	1.40
32193816--32193866	17	3.1	17	75	11	61	19	3	7	68	1.30
32219901--32219942	15	2.8	15	77	0	57	16	23	30	28	1.96
32224080--32224125	11	4.5	11	84	7	53	13	2	8	76	1.11
32224078--32224103	9	2.9	9	100	0	52	23	0	7	69	1.14
32227030--32227083	21	2.6	21	79	5	56	74	1	1	22	1.02
32238015--32238085	15	4.7	15	71	0	52	25	21	25	28	1.99
32247571--32247649	26	3.0	26	94	0	140	31	20	22	25	1.98
32255554--32255592	20	2.0	20	85	10	53	23	0	5	71	1.05
32258239--32258280	21	2.0	22	85	4	59	64	4	19	11	1.44
32261524--32261598	36	2.1	36	100	0	150	36	24	5	34	1.78
32261884--32261941	17	3.4	17	80	0	62	48	12	17	22	1.80
32261884--32261949	34	1.9	34	84	6	89	46	12	19	21	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32261884--32261949	17	3.9	17	77	0	60	46	12	19	21	1.82
32263930--32264055	53	2.5	50	76	10	128	28	12	19	39	1.88
32264114--32264763	102	6.4	102	84	1	759	27	18	17	36	1.93
32264128--32264297	50	3.4	50	68	6	135	27	23	17	32	1.96
32265253--32265297	20	2.2	20	92	0	72	55	15	15	13	1.69
32277920--32277948	12	2.3	13	94	5	51	72	0	27	0	0.85
32283814--32283838	12	2.1	12	100	0	50	32	8	32	28	1.86
32285957--32286255	150	2.0	150	89	0	463	30	22	15	31	1.95
32299793--32300032	52	4.6	52	92	0	390	35	25	15	23	1.95
32319757--32319804	21	2.2	22	88	3	71	58	10	31	0	1.32
32323353--32323446	37	2.5	38	84	6	120	28	36	17	18	1.93
32337823--32337866	18	2.4	18	79	20	56	11	13	0	75	1.06
32339554--32339616	26	2.4	26	86	5	83	30	19	23	26	1.98
32339640--32339814	26	7.0	26	69	10	85	31	17	22	28	1.97
32339530--32339887	98	3.6	98	84	2	434	33	16	22	27	1.95
32340917--32341072	26	6.2	26	69	14	85	30	16	24	29	1.96
32341014--32341066	26	2.1	25	93	6	90	26	16	28	28	1.97
32340906--32341261	98	3.6	98	89	1	525	31	15	24	28	1.96
32341019--32341084	26	2.5	26	90	4	89	25	19	25	28	1.99
32341113--32341162	26	1.9	26	95	0	91	32	20	22	26	1.98
32340906--32341261	195	1.8	197	88	2	547	31	15	24	28	1.96
32342302--32342375	26	2.8	26	89	0	112	31	16	22	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32342354--32342528	72	2.4	72	88	0	251	33	15	21	29	1.94
32342509--32342578	26	2.7	26	78	8	88	34	17	22	25	1.96
32343607--32343677	26	2.7	26	78	4	72	23	14	26	35	1.93
32343611--32343794	99	1.9	100	90	1	298	29	14	23	32	1.94
32343726--32343897	72	2.4	72	80	5	213	33	15	20	30	1.94
32343803--32343998	98	2.0	98	89	4	297	33	15	21	29	1.95
32343629--32344042	170	2.4	170	81	3	501	31	15	23	30	1.95
32347867--32347959	32	2.9	32	80	12	102	40	8	10	39	1.71
32350161--32350203	23	1.9	22	85	4	59	0	18	4	76	0.95
32354654--32354678	12	2.1	12	100	0	50	52	0	8	40	1.31
32354740--32354829	10	9.1	10	75	8	60	61	2	1	35	1.16
32354836--32354870	14	2.4	15	85	9	54	48	14	2	34	1.58
32355625--32355682	30	1.9	30	89	0	89	15	15	5	63	1.47
32359871--32359913	16	2.7	16	79	13	52	74	6	13	4	1.19
32362200--32362260	32	1.9	32	83	6	79	8	18	0	73	1.07
32362857--32362889	17	1.9	17	93	0	57	42	12	9	36	1.74
32367273--32367315	21	2.0	21	83	16	54	74	0	9	16	1.06
32371169--32371251	29	2.9	29	88	0	112	31	13	14	40	1.84
32383055--32383111	18	3.2	18	80	5	62	24	19	24	31	1.98
32389534--32389558	13	1.9	13	100	0	50	40	4	8	48	1.51
32393489--32393531	18	2.4	18	84	3	52	58	11	11	18	1.63
32395790--32395821	16	1.9	17	93	6	57	75	0	12	12	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32395789--32395827	16	2.3	17	82	8	53	74	2	10	12	1.17
32404172--32406056	936	2.0	936	98	0	3628	31	18	20	29	1.96
32415183--32415224	13	3.2	13	80	16	50	2	16	2	78	0.96
32415183--32415226	15	3.2	14	84	12	56	2	18	2	77	0.98
32432688--32432737	19	2.7	20	77	20	54	48	0	0	52	1.00
32433346--32433382	8	4.3	9	80	13	51	29	2	0	67	1.04
32433328--32433378	16	3.3	15	84	10	59	29	3	0	66	1.09
32433328--32433378	8	6.7	7	76	24	50	29	3	0	66	1.09
32433344--32433393	25	2.0	25	88	4	73	32	2	2	64	1.16
32433341--32433400	26	2.4	24	83	10	75	33	1	1	63	1.14
32435507--32435688	81	2.2	81	87	3	251	23	16	30	30	1.96
32440918--32440942	13	1.9	13	100	0	50	40	4	8	48	1.51
32449226--32449338	23	5.0	23	80	1	111	44	23	15	15	1.86
32449226--32449355	46	2.8	46	79	3	138	43	22	17	16	1.87
32461459--32461525	27	2.5	27	87	0	89	40	14	22	22	1.90
32467887--32467929	21	2.0	21	90	0	68	30	18	18	32	1.95
32482070--32482101	14	2.4	13	90	10	55	25	6	6	62	1.42
32486325--32486451	55	2.3	55	78	16	138	29	22	22	25	1.99
32487153--32487339	52	3.6	52	87	2	277	36	25	13	25	1.92
32510217--32510241	9	2.8	9	100	0	50	52	0	24	24	1.48
32512764--32512954	52	3.6	52	82	10	251	32	24	15	26	1.95
32527418--32527452	15	2.3	15	90	0	52	34	0	14	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32529067--32529117	24	2.1	24	92	0	84	27	23	21	27	1.99
32529702--32529755	24	2.4	23	87	9	76	31	7	29	31	1.85
32532295--32532424	43	3.0	43	86	1	170	39	20	9	31	1.84
32538737--32539055	155	2.0	158	81	7	366	24	23	22	30	1.99
32550171--32550217	18	2.7	17	83	3	58	74	2	21	2	1.03
32551315--32551357	9	4.7	9	85	2	59	16	9	2	72	1.21
32559262--32559303	22	2.0	22	85	4	59	33	16	11	38	1.86
32562219--32562249	16	1.9	16	93	0	53	38	12	0	48	1.42
32562229--32562305	31	2.7	29	72	9	68	20	15	5	58	1.56
32562304--32562363	19	3.2	20	79	13	65	26	3	1	68	1.15
32563112--32563335	49	4.6	49	83	3	254	38	16	24	20	1.92
32569912--32569970	22	2.7	22	81	5	66	35	20	10	33	1.86
32570329--32570381	14	3.8	14	87	0	70	50	1	3	43	1.30
32570356--32570395	20	2.0	20	90	9	64	45	5	5	45	1.47
32570528--32570560	16	2.0	17	94	5	59	42	21	0	36	1.53
32570643--32570701	22	2.7	22	89	0	82	30	18	16	33	1.94
32570683--32570772	47	1.9	47	90	0	144	26	13	15	44	1.83
32573116--32573215	48	2.1	48	94	0	173	37	7	21	35	1.80
32577023--32577124	48	2.1	48	92	0	168	38	6	17	37	1.77
32582931--32582991	22	2.8	22	82	0	77	36	19	9	34	1.85
32584768--32584801	17	2.0	17	88	0	50	32	14	2	50	1.58
32592616--32592644	14	2.1	14	93	6	51	58	13	0	27	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32593300--32593343	13	3.2	13	87	9	61	40	4	2	52	1.34
32603934--32603963	16	1.9	16	93	6	53	63	3	0	33	1.11
32606741--32606786	25	1.9	23	86	8	65	56	8	4	30	1.49
32609494--32609549	29	2.0	29	89	3	87	58	14	1	25	1.45
32613312--32613382	26	2.7	26	84	4	81	25	16	25	32	1.96
32626495--32626546	9	5.8	9	79	6	61	3	11	0	84	0.74
32626496--32626546	17	2.8	18	85	5	59	3	11	0	84	0.75
32626533--32626599	26	2.6	26	75	17	68	14	8	2	73	1.20
32627819--32627949	50	2.6	50	84	6	156	36	12	15	35	1.85
32631697--32631997	99	3.0	99	75	12	310	35	16	20	26	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182