genome.fa.s9.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  91  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29230152--29230199	25	2.0	23	88	8	69	14	4	4	77	1.08
29230935--29230972	12	3.3	12	78	14	53	34	5	34	26	1.79
29247939--29247982	21	2.1	21	86	0	61	31	29	13	25	1.94
29247765--29248131	191	1.9	191	94	0	644	37	27	8	26	1.86
29248654--29248953	53	5.7	52	77	6	284	37	21	14	27	1.92
29248654--29248954	106	2.9	104	80	7	315	36	21	13	27	1.92
29255845--29255879	18	1.9	18	88	11	54	20	40	11	28	1.87
29258762--29258868	24	4.5	24	85	9	146	28	24	21	25	1.99
29261537--29261652	50	2.3	50	81	8	121	29	16	16	37	1.90
29275343--29275443	38	2.6	40	71	10	100	21	19	28	29	1.98
29293397--29293440	23	2.0	22	86	4	61	38	0	15	45	1.47
29295576--29295621	25	1.9	25	86	8	69	32	4	6	56	1.45
29299194--29299232	19	2.2	17	86	9	51	0	41	2	56	1.13
29303679--29303739	14	4.4	14	77	4	61	18	1	3	77	0.99
29303679--29303739	28	2.2	27	82	8	70	18	1	3	77	0.99
29306606--29306720	6	18.8	6	82	13	76	16	12	0	70	1.21
29306606--29306673	7	10.7	7	81	10	60	16	20	0	63	1.31
29306669--29306723	17	3.2	17	92	2	92	18	0	1	80	0.81
29306669--29306720	6	8.8	6	93	4	88	17	0	1	80	0.80
29310890--29310949	31	1.9	32	86	3	86	43	23	5	28	1.74
29314214--29314242	15	1.9	15	100	0	58	62	3	0	34	1.12
29321678--29321710	11	3.1	11	86	4	50	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29321660--29321727	19	3.4	19	70	25	59	48	0	0	51	1.00
29338260--29338302	6	6.8	6	80	19	52	79	0	20	0	0.74
29338262--29338302	13	3.2	13	83	10	57	80	0	19	0	0.71
29338262--29338300	21	1.9	20	94	5	69	79	0	20	0	0.73
29340130--29340177	21	2.3	22	82	10	64	72	0	12	14	1.11
29347972--29348073	20	5.1	20	77	9	102	39	20	21	18	1.93
29347975--29348073	13	7.4	14	72	11	57	37	21	22	19	1.94
29347982--29348066	34	2.5	33	81	9	100	38	21	21	18	1.93
29349717--29349755	8	4.9	8	83	0	51	79	2	0	17	0.84
29350938--29351060	33	3.7	34	75	8	101	28	3	44	23	1.69
29351001--29351068	33	2.1	33	86	5	93	27	2	47	22	1.66
29351107--29351215	51	2.1	51	83	3	130	33	10	22	33	1.88
29353195--29353227	17	1.9	17	100	0	66	48	12	15	24	1.78
29356572--29356677	32	3.3	31	73	3	86	36	14	21	27	1.92
29366020--29366067	22	2.2	22	92	0	78	16	31	27	25	1.97
29372651--29372688	19	1.9	21	89	10	62	0	18	0	81	0.69
29373246--29373303	17	3.4	17	82	2	71	50	10	17	22	1.76
29384735--29384765	16	1.9	16	93	0	53	22	16	0	61	1.34
29391413--29391443	14	2.1	15	94	5	55	77	3	6	12	1.08
29392613--29393337	289	2.5	289	84	0	883	28	25	15	31	1.95
29400915--29400980	34	1.9	34	82	11	82	24	21	10	43	1.83
29401797--29401853	21	2.7	21	80	0	69	10	14	33	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29404441--29404570	63	2.0	64	94	2	226	36	12	16	33	1.87
29407715--29407752	17	2.2	17	86	9	51	26	2	10	60	1.43
29416853--29416891	14	2.8	14	81	11	53	12	17	2	66	1.35
29419823--29419860	13	2.9	13	84	7	51	76	0	23	0	0.79
29419818--29419860	21	2.1	20	91	4	68	74	0	25	0	0.82
29422433--29422537	50	2.1	50	94	1	185	45	20	4	29	1.71
29422535--29422589	21	2.7	20	85	5	74	56	23	3	16	1.56
29424237--29424295	30	2.0	30	83	6	75	25	20	27	27	1.99
29436088--29436139	26	2.0	26	100	0	104	42	15	11	30	1.82
29437140--29437186	15	3.1	15	84	0	58	14	27	4	53	1.60
29442481--29442520	19	2.0	20	85	4	55	37	20	15	27	1.92
29452150--29452207	3	19.3	3	76	13	57	1	27	0	70	0.97
29452150--29452205	24	2.3	23	82	11	69	1	26	0	71	0.96
29458272--29458297	13	2.0	13	100	0	52	23	15	30	30	1.95
29466456--29466497	21	2.0	23	86	13	63	14	9	16	59	1.60
29469886--29469910	10	2.5	10	100	0	50	20	28	20	32	1.97
29471512--29471558	24	2.0	24	83	8	60	51	8	12	27	1.69
29483964--29483999	17	2.2	17	90	5	56	63	11	13	11	1.51
29483960--29484008	17	2.7	18	78	12	55	63	10	12	14	1.53
29484390--29484441	21	2.3	23	83	9	63	1	25	0	73	0.94
29484386--29484441	24	2.5	23	82	8	71	1	26	0	71	0.96
29490582--29490607	13	2.0	13	100	0	52	23	15	30	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29528005--29528078	18	4.1	18	89	0	103	32	27	18	21	1.97
29541747--29541805	14	4.3	14	82	2	66	5	11	18	64	1.44
29544234--29544576	41	8.3	41	79	8	340	24	26	25	23	2.00
29544210--29544716	123	4.0	123	79	9	450	25	25	25	23	2.00
29544486--29544674	98	1.9	97	86	1	270	21	27	26	24	1.99
29544597--29544773	42	4.3	41	81	6	189	24	23	26	25	2.00
29547507--29547637	22	5.3	26	66	22	93	48	0	6	45	1.27
29547542--29547715	18	10.6	17	67	16	91	48	0	5	45	1.24
29547519--29547715	49	4.0	49	95	0	351	48	0	5	46	1.25
29553133--29553301	65	2.6	66	83	4	209	43	16	26	13	1.85
29553276--29553313	11	3.5	11	80	20	53	31	23	44	0	1.54
29553276--29553315	21	1.9	21	100	0	80	32	22	45	0	1.53
29553271--29553327	21	2.7	21	78	10	71	35	17	43	3	1.66
29553626--29553723	43	2.3	43	89	0	151	23	23	30	22	1.99
29555257--29555401	36	4.0	36	86	0	200	31	12	22	33	1.91
29555760--29555875	58	2.0	58	84	3	153	31	4	20	43	1.71
29559611--29559816	101	2.0	101	98	0	394	25	33	17	22	1.96
29561541--29561577	7	5.4	7	93	6	67	29	27	13	29	1.94
29563674--29563712	19	2.1	19	90	0	60	33	7	0	58	1.26
29573851--29573917	22	3.1	22	75	10	66	49	11	4	34	1.60
29573900--29573938	18	2.2	18	100	0	78	58	0	5	35	1.20
29576633--29576683	16	3.2	16	80	0	57	56	5	0	37	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29580512--29580619	50	2.2	50	81	3	128	20	26	15	37	1.93
29580591--29580684	24	3.8	24	75	2	80	18	30	17	34	1.93
29587595--29587952	50	7.2	50	75	5	134	23	26	13	37	1.91
29587755--29587844	26	3.5	26	72	6	85	18	25	15	40	1.90
29587606--29587952	150	2.3	150	83	3	414	22	26	13	37	1.92
29587670--29587943	100	2.8	100	79	3	295	21	26	14	37	1.92
29589271--29589361	20	4.6	20	76	4	76	31	7	13	47	1.71
29591804--29591911	50	2.2	50	98	0	207	26	10	21	41	1.85
29593642--29593721	17	4.6	17	77	1	70	47	10	20	22	1.79
29593655--29593720	34	1.9	34	81	0	78	48	10	18	22	1.78
29601681--29601786	37	2.9	37	88	0	158	33	33	19	14	1.92
29601722--29601839	53	2.2	53	89	0	173	32	31	20	16	1.94
29601759--29601802	16	2.8	16	96	0	79	29	31	20	18	1.96
29601775--29601955	37	4.9	37	89	0	272	34	30	19	15	1.93
29601798--29601860	21	3.2	21	67	28	66	31	33	22	12	1.91
29601685--29601860	90	2.0	90	95	0	316	32	31	21	14	1.93
29602352--29602405	26	2.1	26	96	0	99	55	3	7	33	1.45
29606907--29607003	22	4.3	22	78	12	90	43	23	21	11	1.85
29606939--29607025	22	3.9	22	82	7	79	43	25	20	10	1.83
29607093--29607140	26	1.9	24	87	8	69	33	20	0	45	1.52
29611942--29612268	37	8.9	37	81	0	395	35	29	18	16	1.93
29611942--29612268	74	4.4	74	87	0	449	35	29	18	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29611938--29612268	147	2.2	148	87	2	477	35	29	18	16	1.93
29618219--29618279	15	4.1	15	86	0	68	18	31	6	44	1.75
29618230--29618279	15	3.3	15	91	0	73	16	32	4	48	1.64
29623902--29623936	18	1.9	18	88	0	52	22	22	17	37	1.94
29635942--29636024	20	4.1	20	76	12	80	43	1	4	50	1.31
29636109--29636147	18	2.2	18	85	0	51	33	12	10	43	1.77
29639289--29639420	54	2.4	54	94	2	230	27	26	15	31	1.96
29642477--29642571	47	2.0	47	100	0	190	42	8	12	36	1.73
29664796--29664830	13	2.7	13	100	0	70	48	22	0	28	1.51
29666937--29666988	24	2.2	24	82	6	61	5	32	1	59	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182