genome.fa.s9.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  92  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29673324--29673358	18	1.9	18	88	11	54	28	2	0	68	1.04
29674684--29674722	20	2.0	20	89	0	60	35	5	10	48	1.59
29676821--29676860	19	2.1	19	95	0	71	50	17	15	17	1.79
29678957--29678987	3	10.3	3	100	0	62	32	0	0	67	0.91
29682991--29683017	13	2.1	13	100	0	54	37	14	22	25	1.93
29683072--29683145	15	5.0	15	71	15	55	12	2	37	47	1.55
29685405--29685448	22	2.0	22	86	4	63	34	2	13	50	1.55
29688684--29688756	29	2.5	29	84	0	83	45	19	16	19	1.86
29692932--29692972	21	2.0	21	85	9	57	51	0	7	41	1.30
29693624--29693712	37	2.4	37	90	0	133	30	21	12	35	1.90
29694623--29694693	28	2.5	28	86	0	97	40	26	5	26	1.78
29694828--29695061	53	4.4	54	78	3	215	28	26	12	32	1.93
29697168--29697226	26	2.3	26	78	0	64	28	20	20	30	1.97
29706340--29706410	33	2.2	32	82	9	83	47	18	5	28	1.71
29722871--29722976	29	3.7	29	75	5	97	46	23	12	17	1.82
29727193--29727446	54	4.7	54	87	1	330	24	25	14	35	1.93
29732584--29732705	43	2.8	43	80	2	138	31	9	22	36	1.87
29733337--29733366	3	9.7	3	92	7	51	33	0	0	66	0.92
29736987--29737054	30	2.3	30	82	5	75	27	17	27	26	1.98
29739047--29739117	37	1.9	37	97	0	133	36	12	18	32	1.88
29747589--29747627	20	2.0	20	100	0	78	20	12	5	61	1.50
29751294--29751332	21	1.9	21	89	5	62	46	15	15	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29770378--29770411	11	3.2	10	91	8	50	64	2	11	20	1.39
29770915--29770972	6	9.5	6	81	3	62	44	0	31	24	1.54
29770911--29770972	12	5.1	12	76	3	70	46	0	29	24	1.53
29770926--29770972	19	2.5	19	96	3	87	42	0	31	25	1.55
29770911--29770972	25	2.6	25	84	5	83	46	0	29	24	1.53
29772645--29772685	21	2.0	21	90	4	66	46	14	14	24	1.82
29800394--29800477	43	2.0	43	95	0	150	38	28	4	28	1.77
29801152--29801193	15	2.9	14	89	7	57	0	38	0	61	0.96
29809139--29809184	25	1.9	23	86	8	65	34	4	4	56	1.39
29810166--29810199	16	2.1	17	94	5	61	23	17	26	32	1.97
29810281--29810315	16	2.2	16	90	5	54	22	0	0	77	0.78
29815850--29815943	6	15.5	6	76	13	68	17	5	3	74	1.14
29815877--29815916	16	2.5	17	88	8	57	17	0	2	80	0.83
29815885--29815917	16	2.0	17	94	5	59	15	0	0	84	0.61
29815891--29815933	16	2.7	16	81	0	50	18	2	2	76	1.00
29819045--29819073	6	5.0	6	91	8	51	0	65	0	34	0.93
29819047--29819094	11	4.4	11	78	7	53	0	62	2	35	1.07
29819045--29819079	17	2.1	16	94	5	61	0	65	0	34	0.93
29820096--29820148	22	2.3	24	87	6	74	30	0	60	9	1.28
29820104--29820206	40	2.6	39	81	4	100	28	2	58	10	1.46
29826622--29826740	62	2.0	59	88	5	175	48	5	4	42	1.44
29837534--29837564	16	1.9	16	93	0	53	61	9	0	29	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29839123--29839477	174	2.0	174	99	0	701	28	24	13	33	1.93
29839563--29839610	17	2.8	17	75	6	53	8	20	0	70	1.12
29845367--29845399	17	1.9	17	93	0	57	33	9	36	21	1.85
29849099--29849130	16	2.0	16	100	0	64	31	18	12	37	1.88
29851064--29851109	24	1.9	24	90	0	74	63	8	23	4	1.42
29861382--29861431	17	2.9	18	76	11	59	30	14	4	52	1.59
29865396--29865715	162	2.0	162	96	0	595	30	18	20	31	1.96
29872096--29872155	9	7.0	9	73	17	56	73	1	25	0	0.93
29872106--29872157	12	4.6	11	78	19	54	73	0	26	0	0.84
29872096--29872155	21	2.9	21	80	14	70	73	1	25	0	0.93
29893292--29893366	3	25.0	3	74	15	66	2	28	0	69	1.02
29897875--29897912	14	2.9	13	85	11	51	0	15	0	84	0.63
29898512--29898550	18	2.3	17	86	8	53	56	5	15	23	1.59
29906890--29906919	15	2.0	15	100	0	60	40	13	26	20	1.89
29914760--29914811	16	3.2	16	76	10	52	21	17	3	57	1.55
29915450--29915514	6	10.2	6	77	11	58	78	10	4	6	1.07
29915449--29915486	13	3.0	13	88	3	60	76	10	7	5	1.15
29915452--29915515	31	2.0	33	90	6	105	78	9	4	7	1.09
29915450--29915504	13	4.4	12	77	6	56	80	10	3	5	1.01
29917272--29917315	18	2.4	18	88	0	70	70	13	15	0	1.17
29926649--29926679	13	2.4	13	100	0	62	74	0	9	16	1.07
29945241--29945265	12	2.1	12	100	0	50	8	28	0	64	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29954030--29954079	21	2.4	21	93	6	84	32	26	16	26	1.96
29954749--29955204	53	8.7	53	88	1	600	34	21	15	28	1.94
29959005--29959048	15	2.8	16	79	3	54	0	25	0	75	0.81
29959590--29959631	17	2.4	18	88	4	59	57	14	11	16	1.66
29959590--29959643	18	3.1	18	86	2	65	57	14	11	16	1.65
29962416--29962460	23	2.0	24	86	8	67	68	2	17	11	1.29
29976225--29976257	17	1.9	17	88	11	50	9	6	9	75	1.18
29978339--29978394	20	3.0	19	76	21	64	32	0	0	67	0.91
29978340--29978392	10	5.5	10	74	21	51	32	0	0	67	0.91
29982355--29982460	30	3.5	30	88	0	158	40	27	16	16	1.89
29986936--29986992	24	2.4	24	81	0	87	24	21	22	31	1.98
30006858--30006900	23	1.9	23	85	4	61	48	0	13	37	1.43
30007768--30007955	50	3.7	51	84	2	234	30	13	21	34	1.92
30013782--30013833	23	2.4	21	75	15	52	46	0	11	42	1.40
30014676--30014914	51	4.6	51	80	3	255	32	14	23	29	1.94
30035048--30035080	16	2.1	16	100	0	66	48	27	6	18	1.71
30063839--30063877	21	1.9	21	89	5	62	41	15	17	25	1.89
30063874--30063898	13	1.9	13	100	0	50	48	12	16	24	1.79
30067316--30067340	13	1.9	13	100	0	50	48	8	16	28	1.74
30074951--30074992	18	2.3	19	80	12	52	11	16	28	42	1.84
30080754--30080802	21	2.3	21	89	6	73	10	38	24	26	1.87
30081962--30082088	33	3.8	33	85	0	146	35	20	14	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30088746--30088781	12	3.0	12	87	0	54	75	0	8	16	1.04
30088746--30088780	17	2.1	17	89	10	54	77	0	5	17	0.96
30088748--30088786	12	3.2	12	85	0	51	74	2	10	12	1.17
30093728--30093770	6	6.8	6	85	15	52	0	20	0	79	0.74
30093730--30093767	13	2.9	13	85	11	51	0	21	0	78	0.74
30093730--30093768	21	1.9	20	94	5	69	0	20	0	79	0.73
30095169--30095684	261	2.0	261	89	0	798	29	20	22	27	1.99
30114247--30114294	24	2.0	25	84	12	64	75	0	20	4	0.97
30114788--30114852	14	4.4	14	74	11	67	50	15	18	15	1.78
30127549--30127584	12	3.0	12	87	0	54	75	0	8	16	1.04
30127549--30127583	17	2.1	17	89	10	54	77	0	5	17	0.96
30133546--30133578	6	5.5	6	100	0	66	0	30	0	69	0.88
30135281--30135326	19	2.5	19	82	3	58	52	6	0	41	1.27
30138423--30138462	21	1.9	21	84	0	53	12	2	15	70	1.28
30138873--30138965	28	3.3	28	69	11	73	54	2	0	43	1.12
30138877--30138918	21	2.0	21	86	9	59	57	2	0	40	1.12
30138922--30138955	13	2.5	13	90	4	50	61	2	0	35	1.11
30138956--30139008	15	3.6	15	78	16	58	50	0	3	45	1.19
30144460--30144526	32	2.1	32	94	0	116	32	11	11	43	1.78
30144631--30144681	18	2.8	18	70	21	52	35	15	13	35	1.87
30144844--30144870	9	3.0	9	100	0	54	44	0	0	55	0.99
30150011--30150041	14	2.2	14	94	0	53	35	6	0	58	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30150181--30150216	15	2.5	15	95	4	65	41	13	5	38	1.68
30150339--30150378	21	1.9	21	90	10	64	55	7	12	25	1.63
30151070--30151128	23	2.6	22	71	7	55	22	3	23	50	1.63
30151093--30151126	17	2.0	17	88	0	50	20	0	26	52	1.46
30151801--30151963	43	3.7	43	84	1	200	33	21	22	22	1.97
30156650--30156698	17	2.9	17	78	0	53	48	12	20	18	1.79
30167349--30167392	20	2.2	20	84	15	56	2	22	0	75	0.92
30167348--30167394	13	3.5	13	85	14	60	2	23	0	74	0.93
30194760--30194813	28	1.9	28	85	7	74	48	12	7	31	1.69
30202502--30202541	20	2.0	20	90	0	62	40	35	2	22	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182