genome.fa.s9.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  173  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52327990--52328026	19	2.0	18	94	5	65	18	0	21	59	1.38
52327849--52328026	44	4.0	40	77	17	149	23	0	24	52	1.47
52329420--52329511	46	2.0	46	100	0	184	28	17	6	47	1.72
52338758--52338782	12	2.1	12	100	0	50	24	0	8	68	1.16
52340960--52341322	180	2.0	181	93	0	620	30	9	21	38	1.85
52346127--52346158	2	16.0	2	100	0	64	50	0	0	50	1.00
52346156--52346194	4	9.8	4	100	0	78	51	0	23	25	1.49
52349125--52349157	13	2.5	13	95	0	57	51	3	0	45	1.16
52354186--52354227	21	2.0	22	85	4	59	38	9	14	38	1.78
52357522--52357641	58	2.1	58	79	6	127	34	6	8	50	1.58
52359675--52359728	27	2.0	26	82	10	65	61	9	3	25	1.43
52361978--52362003	6	4.3	6	100	0	52	15	30	0	53	1.42
52369081--52369105	2	12.5	2	100	0	50	52	0	0	48	1.00
52372460--52372486	8	3.4	8	100	0	54	77	0	0	22	0.76
52386838--52386866	3	9.7	3	100	0	58	31	0	0	68	0.89
52392849--52392924	39	1.9	39	94	0	134	25	13	31	30	1.93
52393662--52393710	19	2.6	18	75	18	55	53	6	10	30	1.59
52393740--52393786	13	3.7	13	74	5	51	31	4	0	63	1.13
52398181--52398242	31	2.0	31	87	0	88	29	9	12	48	1.73
52398820--52398900	37	2.2	36	82	8	92	55	3	3	37	1.35
52400571--52400609	20	2.0	20	90	10	62	46	5	0	48	1.24
52400796--52400848	18	3.1	17	75	5	54	33	0	1	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52406614--52406661	24	2.0	24	95	0	87	37	18	14	29	1.91
52409414--52409551	57	2.5	57	84	7	185	49	7	7	35	1.60
52423046--52423101	29	1.9	29	82	7	69	30	16	10	42	1.82
52425042--52425107	32	2.1	32	88	8	100	51	0	0	48	1.00
52425763--52425810	25	1.9	25	95	0	87	37	0	8	54	1.31
52433412--52433436	7	3.6	7	100	0	50	44	0	0	56	0.99
52433422--52433476	23	2.4	24	81	9	69	36	3	5	54	1.41
52433449--52433490	17	2.5	17	88	0	66	38	2	7	52	1.42
52434809--52434833	13	1.9	13	100	0	50	40	0	16	44	1.47
52435319--52435621	29	10.5	30	76	10	179	36	27	3	32	1.73
52435315--52435393	30	2.7	29	82	3	104	41	18	2	36	1.65
52435397--52435665	29	9.3	29	77	7	235	32	30	4	33	1.77
52435378--52435680	57	5.2	58	74	10	178	34	28	3	33	1.75
52435764--52435821	31	2.0	29	83	10	73	22	5	5	67	1.31
52435957--52436149	97	2.0	99	86	4	275	30	15	15	39	1.88
52447835--52448194	172	2.1	172	92	1	605	37	17	22	22	1.94
52448574--52448706	34	3.9	34	94	3	216	36	1	5	56	1.31
52448593--52448693	11	8.8	12	70	10	59	36	1	4	56	1.32
52448574--52448697	17	7.3	17	85	1	169	36	1	4	58	1.27
52450567--52450749	29	6.4	30	77	9	120	33	28	3	34	1.75
52450575--52450779	56	3.6	57	81	7	240	32	29	4	34	1.77
52450575--52450792	28	7.7	29	79	9	218	32	28	4	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52457730--52457759	13	2.2	14	94	5	53	43	0	0	56	0.99
52472453--52472482	5	6.0	5	100	0	60	80	0	20	0	0.72
52474031--52474159	55	2.3	55	86	2	170	52	12	6	28	1.63
52478856--52478899	12	3.6	12	78	6	52	43	0	2	54	1.12
52479513--52479544	14	2.2	15	94	5	57	81	0	18	0	0.70
52482286--52482338	26	2.0	27	88	3	81	49	0	3	47	1.19
52488357--52488410	2	27.0	2	96	0	99	48	0	1	50	1.11
52488713--52488740	3	9.3	3	100	0	56	0	35	0	64	0.94
52491953--52492012	26	2.4	25	88	2	84	41	0	1	56	1.09
52493381--52493413	14	2.4	14	95	5	59	27	0	0	72	0.85
52507310--52507361	23	2.4	22	74	6	52	59	1	5	32	1.32
52517325--52517355	10	2.9	11	90	9	55	19	9	6	64	1.45
52523971--52524048	22	3.5	22	84	5	95	37	25	21	15	1.93
52524037--52524113	23	3.3	23	90	0	118	41	20	27	10	1.85
52526485--52526514	14	2.1	15	93	6	53	50	0	23	26	1.50
52528921--52528959	20	1.9	21	84	5	53	33	2	17	46	1.62
52535472--52535538	31	2.2	30	86	2	89	23	8	26	40	1.84
52540775--52541152	153	2.5	150	83	5	464	25	21	16	36	1.94
52540908--52541173	147	1.8	146	85	3	372	23	22	16	36	1.94
52550640--52550733	47	2.0	46	87	6	136	44	10	9	35	1.72
52551322--52551377	18	2.9	18	75	17	51	17	21	3	57	1.55
52564062--52564305	91	2.7	91	85	3	348	36	16	11	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52566996--52567042	24	2.0	24	95	0	85	25	10	6	57	1.56
52568979--52569033	24	2.3	24	87	0	74	27	14	9	49	1.73
52571447--52571525	41	1.9	42	89	2	124	32	11	3	51	1.55
52580469--52580554	39	2.2	39	91	0	136	29	12	24	33	1.92
52581430--52581459	6	5.2	6	96	4	53	33	16	13	36	1.88
52588826--52589190	152	2.4	152	86	3	500	24	22	15	36	1.93
52590790--52590835	24	1.9	23	86	8	65	56	8	2	32	1.42
52590906--52590939	13	2.6	13	85	0	50	58	11	0	29	1.33
52591382--52591490	39	2.8	39	88	0	164	27	14	32	25	1.95
52597537--52597566	15	1.9	16	93	6	53	70	0	13	16	1.18
52597512--52597571	22	2.8	22	87	9	81	73	0	10	16	1.09
52598342--52598371	14	2.1	14	93	0	51	73	3	6	16	1.18
52598373--52598415	19	2.3	19	84	8	52	58	4	0	37	1.19
52607396--52607565	91	1.9	91	91	0	277	34	17	13	35	1.89
52611094--52611168	24	3.1	24	84	0	105	22	12	8	57	1.60
52627040--52627099	30	2.0	31	83	3	77	41	11	8	38	1.72
52627371--52627407	7	5.4	7	87	6	58	13	0	0	86	0.57
52630829--52630871	22	2.0	21	86	4	59	34	0	9	55	1.32
52638294--52638360	14	5.6	12	75	18	52	22	1	2	73	1.06
52638297--52638358	21	3.2	18	74	14	52	22	1	3	72	1.08
52640550--52640595	25	1.9	23	86	8	65	36	4	4	54	1.40
52654608--52654724	40	2.9	40	81	7	139	40	17	20	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52654711--52654884	41	4.3	41	81	5	124	24	25	25	23	2.00
52654736--52654884	41	3.7	42	82	7	175	24	25	26	23	2.00
52654896--52654986	42	2.2	42	87	0	128	24	23	20	31	1.98
52660514--52660555	21	2.0	21	100	0	84	4	14	33	47	1.65
52660535--52660633	43	2.3	43	91	3	155	20	17	29	33	1.95
52671355--52671382	14	2.0	14	100	0	56	50	0	0	50	1.00
52671725--52671752	14	2.0	14	100	0	56	50	0	0	50	1.00
52672898--52673200	153	2.0	153	83	3	378	25	20	16	37	1.93
52680561--52680652	47	2.0	47	84	4	123	44	11	8	34	1.72
52682278--52682326	24	2.0	24	84	0	62	36	2	6	55	1.37
52683013--52683396	153	2.5	153	88	4	578	23	21	17	36	1.94
52684637--52684687	15	3.5	15	70	5	50	35	11	1	50	1.50
52692558--52692923	153	2.4	153	88	3	558	23	20	18	37	1.94
52697643--52697672	16	1.9	16	93	6	53	73	0	0	26	0.84
52701068--52701155	44	2.0	44	100	0	176	34	25	9	31	1.87
52707542--52707580	3	13.0	3	84	10	53	0	35	0	64	0.94
52707544--52707580	12	3.0	13	92	7	60	0	37	0	62	0.96
52707579--52707610	3	10.7	3	93	0	55	28	34	0	37	1.57
52707698--52707759	26	2.2	28	83	11	74	11	51	3	33	1.54
52716569--52716604	3	12.0	3	100	0	72	0	66	0	33	0.92
52720107--52720190	28	3.0	27	83	16	91	33	4	29	32	1.78
52720144--52720422	57	4.7	59	78	9	223	36	4	26	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52720334--52720528	59	3.3	59	83	7	236	35	1	27	35	1.67
52720115--52720535	29	14.4	29	73	15	223	36	3	26	33	1.74
52721620--52721675	9	6.2	9	79	8	53	39	5	1	53	1.34
52721590--52721662	12	5.6	12	73	17	65	36	5	1	56	1.31
52721643--52721683	21	2.0	21	85	0	55	43	2	2	51	1.28
52722363--52722397	17	2.1	17	88	0	52	45	0	2	51	1.16
52722368--52722406	17	2.3	17	86	0	51	51	0	2	46	1.14
52724138--52724306	92	1.8	93	92	1	286	42	14	16	27	1.87
52738215--52738249	15	2.2	16	90	5	54	65	0	0	34	0.93
52741318--52741356	20	1.9	21	89	5	62	41	0	0	58	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182