genome.fa.s9.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  28  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11302238--11302271	6	5.7	6	100	0	68	32	0	67	0	0.91
11305209--11305247	21	2.0	20	85	10	53	53	7	0	38	1.30
11312069--11312110	16	2.6	16	78	17	50	57	2	7	33	1.39
11312922--11312980	29	2.1	29	84	15	79	50	3	1	44	1.28
11315700--11315750	22	2.3	23	82	3	59	49	1	3	45	1.32
11316153--11316233	20	4.3	20	66	20	66	4	7	17	70	1.29
11316153--11316191	21	1.9	20	89	5	60	2	2	23	71	1.10
11316241--11316291	23	2.2	24	82	3	59	5	7	17	68	1.34
11316252--11316294	12	3.7	12	81	3	52	6	6	16	69	1.32
11319949--11319993	23	2.0	23	82	4	56	55	6	6	31	1.52
11333252--11333332	30	2.7	29	76	16	76	55	0	2	41	1.13
11333712--11333745	2	17.0	2	100	0	68	50	0	0	50	1.00
11333907--11333931	3	8.3	3	100	0	50	68	0	0	32	0.90
11336587--11336755	87	1.9	87	96	0	311	34	13	21	30	1.92
11338076--11338107	15	2.1	15	94	0	55	28	50	3	18	1.62
11339732--11339772	16	2.6	16	75	24	50	36	0	0	63	0.95
11340159--11340219	30	2.0	31	87	3	88	52	6	1	39	1.37
11341773--11341811	17	2.3	17	86	0	51	46	2	0	51	1.14
11341864--11341911	21	2.2	23	85	7	64	45	6	6	41	1.54
11344327--11344363	19	2.1	17	90	10	56	59	0	0	40	0.97
11345208--11345266	2	29.5	2	100	0	118	0	49	0	50	1.00
11345266--11345297	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11350116--11350167	26	2.0	26	84	0	68	44	7	11	36	1.70
11351785--11351838	19	2.6	21	71	14	58	16	11	9	62	1.52
11355320--11355371	22	2.4	22	83	6	61	34	7	0	57	1.27
11357637--11357716	10	8.1	9	75	14	61	27	3	2	66	1.22
11357623--11357749	9	12.6	10	68	19	50	25	7	1	66	1.26
11357643--11357698	21	2.7	20	83	8	76	26	5	0	67	1.11
11357641--11357748	21	5.3	21	74	14	61	24	6	1	67	1.24
11361459--11361496	16	2.4	16	86	4	51	60	5	0	34	1.19
11363436--11363478	17	2.4	19	80	7	54	62	2	2	32	1.20
11368368--11368747	133	2.9	133	93	0	627	30	20	19	30	1.97
11370840--11370940	48	2.1	48	83	7	125	47	3	44	3	1.40
11377146--11377191	24	2.0	23	82	4	56	30	19	8	41	1.82
11377215--11377295	2	40.5	2	100	0	162	0	49	0	50	1.00
11377867--11377903	17	2.2	17	90	0	56	59	8	0	32	1.27
11390112--11390224	26	4.3	25	71	19	77	24	5	12	57	1.56
11390104--11390225	55	2.2	54	80	8	131	25	4	11	58	1.53
11391912--11391957	24	2.0	23	86	4	65	54	6	26	13	1.62
11400487--11400555	16	4.4	15	89	10	95	49	0	15	34	1.46
11400487--11400555	31	2.2	32	87	12	99	49	0	15	34	1.46
11401905--11401965	25	2.4	26	78	15	65	42	1	4	50	1.33
11401930--11401980	20	2.7	20	82	8	63	45	3	3	47	1.40
11417186--11417213	5	5.6	5	100	0	56	39	0	60	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11419084--11419133	16	3.2	16	72	16	52	38	0	0	62	0.96
11423509--11423544	16	2.2	16	90	0	54	55	2	16	25	1.55
11424547--11424604	26	2.1	28	81	9	66	37	6	8	46	1.61
11436758--11436868	38	2.9	38	83	1	125	28	22	14	34	1.93
11436796--11436869	38	1.9	38	94	0	130	28	17	14	39	1.89
11438050--11438079	15	2.1	15	93	6	53	33	0	0	66	0.92
11446048--11446116	22	3.0	22	79	8	57	53	1	0	44	1.09
11447733--11447771	16	2.4	17	87	8	55	17	7	28	46	1.76
11447962--11448012	21	2.4	21	80	0	66	56	7	1	33	1.39
11449425--11449473	6	8.2	6	100	0	98	0	51	16	32	1.45
11458072--11458109	18	2.2	17	86	13	51	34	13	13	39	1.83
11458115--11458145	9	3.3	9	95	4	53	70	3	0	25	1.02
11464821--11464846	6	4.3	6	100	0	52	15	34	0	50	1.45
11465680--11465739	31	1.9	31	90	6	95	30	11	15	43	1.82
11466538--11466595	25	2.3	26	77	19	70	58	5	3	32	1.37
11468509--11468592	38	2.2	38	83	6	100	65	5	0	28	1.16
11468718--11468813	12	8.3	12	72	9	65	67	17	6	8	1.37
11468724--11468781	23	2.5	24	82	5	73	67	15	5	12	1.39
11468702--11468813	44	2.5	44	81	4	127	66	16	5	10	1.39
11468705--11468813	56	2.0	55	83	5	139	66	17	5	10	1.39
11468760--11468831	33	2.1	35	84	7	94	68	18	6	6	1.36
11468717--11468833	56	2.1	56	80	3	128	66	18	6	7	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11468825--11468900	21	3.9	20	76	11	77	69	10	6	13	1.35
11470213--11470245	12	2.6	13	90	4	50	36	0	0	63	0.95
11471298--11471426	68	1.9	67	90	4	206	31	4	5	58	1.41
11473679--11473728	19	2.7	18	81	9	64	60	6	2	32	1.32
11473688--11473730	10	4.4	10	76	5	52	65	2	2	30	1.18
11473772--11473814	20	2.2	20	83	8	52	55	6	2	34	1.39
11473831--11473888	18	3.2	17	77	18	64	60	3	3	32	1.30
11473787--11473879	47	2.0	48	80	6	109	59	4	4	32	1.37
11474438--11474514	31	2.5	31	73	0	82	44	9	3	42	1.54
11476268--11476294	3	9.0	3	100	0	54	33	0	33	33	1.58
11491898--11491956	25	2.3	25	82	2	73	42	1	1	54	1.20
11491889--11491958	25	2.8	25	78	4	70	40	1	1	57	1.17
11491981--11492020	17	2.3	19	79	16	50	57	0	0	42	0.98
11493107--11493146	2	20.0	2	100	0	80	50	0	0	50	1.00
11494422--11494490	31	2.2	31	75	17	72	47	10	17	24	1.78
11496297--11496352	9	7.1	9	72	27	56	53	0	0	46	1.00
11496293--11496359	20	3.5	19	69	27	61	52	0	0	47	1.00
11497350--11497382	17	1.9	17	93	0	57	54	0	0	45	0.99
11500398--11500450	25	2.2	24	86	3	70	26	15	7	50	1.70
11500433--11500512	31	2.6	31	82	4	90	30	18	11	40	1.86
11500974--11501115	58	2.4	60	81	5	164	48	9	17	23	1.77
11501187--11501258	8	8.6	9	72	18	50	76	1	1	20	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11501187--11501232	16	2.9	16	84	12	67	80	0	2	17	0.81
11501187--11501249	32	1.9	33	84	9	85	74	1	1	22	0.99
11502272--11502304	17	2.0	17	88	5	50	42	0	3	54	1.15
11506123--11506454	173	1.9	173	98	0	637	31	21	12	34	1.90
11508180--11508222	19	2.2	20	87	4	61	32	4	4	58	1.39
11508193--11508231	20	2.0	20	85	10	53	33	7	2	56	1.41
11521513--11521545	15	2.2	15	100	0	66	57	18	0	24	1.40
11524313--11524348	19	1.9	18	88	5	54	33	0	5	61	1.19
11524313--11524348	9	3.9	9	89	7	54	33	0	5	61	1.19
11534821--11534872	6	8.8	6	81	10	63	50	5	0	44	1.26
11534821--11534868	17	2.8	17	90	6	71	47	6	0	45	1.27
11534821--11534907	17	4.7	18	73	20	65	50	5	4	39	1.47
11536391--11536459	25	2.6	28	90	6	108	34	13	1	50	1.50
11537121--11537177	29	2.0	30	82	6	73	17	7	7	68	1.35
11538220--11538270	25	2.0	25	100	0	102	37	7	27	27	1.84
11538867--11538915	25	1.9	26	87	4	73	61	2	6	30	1.32
11541067--11541102	18	1.9	19	88	5	56	27	11	0	61	1.30
11541907--11541932	13	2.0	13	100	0	52	46	0	0	53	1.00
11544317--11544349	16	2.1	16	100	0	66	27	12	24	36	1.91
11551597--11551657	6	9.3	6	75	16	50	22	3	3	70	1.17
11564097--11564153	2	28.5	2	100	0	114	0	50	0	49	1.00
11567709--11567734	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11571653--11571690	20	1.9	20	100	0	76	78	5	15	0	0.91
11581812--11581851	17	2.3	18	82	8	55	52	0	0	47	1.00
11581986--11582035	24	2.1	24	100	0	100	48	24	0	28	1.52
11583439--11583472	17	2.0	17	88	0	50	52	0	0	47	1.00
11583459--11583520	29	2.1	29	84	6	79	58	1	1	38	1.18
11585789--11585851	26	2.4	27	76	15	69	52	3	3	41	1.33
11607790--11607861	37	1.9	37	94	0	126	36	8	30	25	1.85
11608456--11608488	17	1.9	17	88	11	50	24	0	6	69	1.10
11614714--11614867	79	1.9	79	97	0	290	40	14	12	32	1.83
11616382--11616425	20	2.3	20	85	11	58	47	4	0	47	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182