genome.fa.s9.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  93  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30206634--30206664	14	2.1	15	94	5	55	12	16	0	70	1.16
30223696--30223744	19	2.4	21	83	6	57	69	2	20	8	1.24
30242290--30242337	6	7.8	6	81	4	51	22	2	4	70	1.15
30242264--30242305	21	2.0	21	81	9	50	26	2	9	61	1.39
30242290--30242352	31	2.0	31	81	6	74	23	1	4	69	1.16
30243684--30243747	27	2.4	25	92	5	74	31	23	3	42	1.70
30243693--30243747	27	2.0	27	100	0	110	32	25	0	41	1.56
30244868--30244897	15	1.9	16	93	6	53	86	0	13	0	0.57
30245793--30245855	8	8.9	7	78	18	51	76	1	22	0	0.88
30245800--30245856	21	2.7	21	82	17	66	77	1	21	0	0.86
30246739--30246970	49	4.7	49	78	1	205	34	17	28	19	1.95
30246739--30246970	98	2.4	98	80	1	268	34	17	28	19	1.95
30247246--30247334	40	2.2	39	94	4	151	32	22	15	29	1.95
30247314--30247354	20	2.0	20	90	9	66	29	21	12	36	1.90
30247334--30247619	39	7.3	39	70	13	167	33	24	15	26	1.95
30247334--30247614	78	3.6	77	79	2	265	33	23	16	26	1.95
30247629--30248109	40	12.1	40	81	8	500	32	25	17	24	1.97
30247501--30247752	139	1.8	138	81	6	312	33	23	15	27	1.95
30247636--30248154	198	2.6	197	83	5	539	31	25	17	25	1.97
30247629--30248155	79	6.7	78	81	6	419	31	25	17	25	1.97
30253808--30253896	24	3.7	24	80	7	99	28	23	22	25	1.99
30254728--30254804	40	1.9	40	97	0	145	22	25	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30268766--30268822	29	2.0	29	89	0	87	56	24	3	15	1.56
30269205--30269239	13	2.6	13	90	4	52	51	20	14	14	1.76
30273081--30273112	12	2.5	13	90	10	57	28	15	34	21	1.94
30277999--30278037	20	2.0	20	94	0	69	15	17	33	33	1.92
30279799--30279825	12	2.2	12	100	0	54	14	18	18	48	1.82
30279878--30279933	26	2.2	26	100	0	112	39	10	12	37	1.78
30280121--30280153	13	2.4	14	85	10	50	39	3	0	57	1.14
30280704--30280737	10	3.3	10	87	4	50	44	0	5	50	1.26
30281172--30281205	18	1.9	18	88	5	52	29	0	5	64	1.17
30283377--30283421	21	2.1	21	88	8	65	44	2	28	24	1.66
30283847--30283888	17	2.3	19	88	8	61	66	4	0	28	1.12
30283848--30283888	19	2.3	17	87	8	55	68	4	0	26	1.10
30290643--30290676	18	1.9	18	88	5	52	14	2	8	73	1.19
30291053--30291091	18	2.1	19	86	13	55	25	0	0	74	0.82
30291068--30291093	13	2.0	13	100	0	52	30	0	0	69	0.89
30303776--30303860	37	2.3	37	85	0	116	28	30	17	23	1.97
30304769--30304799	16	1.9	16	93	0	53	22	16	0	61	1.34
30308381--30308428	21	2.3	21	96	0	87	20	25	25	29	1.99
30314065--30314101	18	2.1	18	89	0	56	10	18	32	37	1.86
30323144--30323184	18	2.3	18	95	0	73	19	12	9	58	1.61
30323783--30323821	21	1.9	20	94	5	69	76	0	23	0	0.78
30328786--30328843	30	1.9	30	86	6	82	44	15	27	12	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30346111--30346155	17	2.6	17	78	0	54	48	11	20	20	1.79
30355876--30355916	13	3.1	14	77	22	52	70	0	29	0	0.87
30355872--30355911	21	2.0	20	85	14	55	67	0	32	0	0.91
30358325--30358387	30	2.1	30	96	0	117	34	12	28	23	1.92
30359821--30360033	37	5.8	37	88	2	284	12	21	33	32	1.90
30359879--30359942	21	3.3	21	66	20	66	10	21	34	32	1.89
30367313--30367498	37	5.0	37	89	0	264	12	22	32	31	1.92
30367355--30367450	16	5.4	16	65	26	50	11	23	34	30	1.90
30389865--30389912	25	1.9	25	86	0	69	39	0	2	58	1.10
30391409--30391497	30	3.1	29	88	7	128	43	3	1	51	1.25
30394442--30394609	83	2.0	83	94	0	291	27	29	11	31	1.91
30399138--30399312	67	2.7	64	89	6	271	52	4	1	42	1.27
30401650--30401729	31	2.6	31	90	3	119	41	10	18	30	1.83
30403871--30403896	11	2.4	11	100	0	52	46	0	42	11	1.40
30404210--30404388	64	2.9	63	88	7	260	53	3	0	41	1.23
30404551--30404586	17	2.2	16	95	5	63	27	2	5	63	1.30
30406261--30406317	21	2.7	21	94	0	96	31	19	26	22	1.98
30406959--30407051	19	4.9	19	86	0	114	23	24	20	31	1.98
30407199--30407386	102	1.8	102	89	2	297	29	26	16	27	1.97
30411182--30411218	18	2.1	18	100	0	74	43	24	10	21	1.84
30417059--30417097	17	2.3	17	86	0	51	53	12	15	17	1.72
30433451--30433520	28	2.5	28	88	0	95	20	22	20	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30433476--30433549	28	2.6	28	85	4	87	18	22	21	36	1.95
30435947--30435993	12	4.3	12	84	13	50	76	6	0	17	0.98
30435964--30435992	9	3.0	10	90	10	51	79	0	0	20	0.74
30439035--30439091	26	2.2	26	90	3	89	28	24	19	28	1.98
30439089--30439173	37	2.3	38	83	6	120	27	10	28	34	1.90
30441566--30441707	51	2.8	51	85	1	185	33	13	23	29	1.93
30442335--30442391	21	2.5	24	88	8	84	29	5	26	38	1.78
30447644--30447673	16	1.9	16	93	6	53	43	0	26	30	1.55
30451668--30451718	24	2.1	24	85	7	68	29	23	25	21	1.99
30456193--30456676	240	2.0	241	88	1	711	34	19	19	26	1.95
30465036--30465082	15	3.0	15	81	15	51	72	0	25	2	0.96
30469508--30469732	29	7.7	29	80	5	238	35	24	2	37	1.68
30469516--30469728	60	3.6	59	84	3	268	34	23	2	38	1.68
30481274--30481714	39	11.3	39	70	5	221	24	31	18	26	1.97
30481258--30481750	78	6.3	78	83	1	533	25	31	17	25	1.97
30483259--30483292	17	2.0	17	88	0	50	76	2	5	14	1.09
30484080--30484365	29	9.7	29	81	6	299	36	23	1	39	1.62
30484083--30484363	88	3.2	88	83	4	336	37	22	1	39	1.61
30485624--30486038	213	1.9	213	98	0	794	42	19	10	28	1.83
30486254--30486327	24	3.1	23	78	5	85	32	22	20	24	1.98
30491227--30491252	7	3.7	7	100	0	52	15	53	0	30	1.42
30493013--30493088	34	2.3	34	81	4	93	39	11	13	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30498266--30498401	58	2.3	58	81	10	154	46	1	2	50	1.23
30501945--30502090	58	2.5	58	84	11	183	46	2	0	50	1.20
30502185--30502278	44	2.1	46	86	7	131	37	25	5	31	1.78
30502260--30502331	16	4.5	16	91	0	117	26	29	5	38	1.79
30512757--30512812	25	2.2	25	78	6	60	51	3	19	25	1.62
30513105--30513129	6	4.2	6	100	0	50	48	16	0	36	1.46
30527443--30527473	3	10.3	3	92	0	53	64	0	3	32	1.09
30533322--30533720	126	3.0	126	79	10	388	27	19	20	32	1.97
30533464--30533728	140	1.9	140	83	6	347	28	19	20	32	1.97
30538113--30538151	18	2.2	16	86	13	51	0	33	0	66	0.92
30544330--30544365	19	1.9	18	88	5	54	72	5	5	16	1.23
30544327--30544378	10	5.4	9	73	13	50	78	3	3	13	1.02
30548213--30548252	19	2.1	19	90	0	62	30	7	5	57	1.48
30549228--30549568	35	9.5	35	79	5	324	24	21	14	39	1.91
30549230--30549533	108	2.8	107	81	4	349	24	22	14	38	1.91
30549228--30549573	143	2.4	145	84	2	466	24	21	15	38	1.92
30551430--30551642	116	1.9	114	82	5	268	23	25	10	40	1.86
30557180--30557229	13	3.2	16	70	18	52	48	0	0	52	1.00
30557243--30557279	16	2.3	17	81	13	51	54	0	5	40	1.24
30557334--30557367	15	2.3	15	89	0	50	47	2	0	50	1.16
30557340--30557369	15	2.0	15	100	0	60	46	0	0	53	1.00
30564121--30564146	5	5.2	5	100	0	52	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30568170--30568238	20	3.5	20	100	0	138	40	5	4	49	1.47
30569000--30569070	34	2.0	34	86	5	97	54	7	1	36	1.36
30569007--30569061	17	3.2	17	80	10	67	52	5	1	40	1.35
30569297--30569672	192	2.0	190	83	5	472	37	13	17	31	1.88
30571336--30571374	7	5.6	7	82	11	53	28	0	0	71	0.86
30571343--30571372	15	2.0	15	93	0	51	30	0	0	70	0.88
30571336--30571381	21	2.3	19	85	10	65	28	0	0	71	0.86
30571336--30571386	20	2.4	21	87	12	70	27	1	0	70	0.98
30573280--30573320	20	2.0	22	90	9	68	29	0	24	46	1.53
30573569--30573808	105	2.3	103	82	5	277	28	14	24	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182