genome.fa.s9.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  142  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44048014--44048405	29	13.4	29	77	7	249	32	3	27	37	1.72
44048069--44048739	58	11.6	57	74	11	320	33	3	26	36	1.73
44048177--44048739	88	6.5	86	69	14	259	34	3	25	37	1.71
44048410--44048691	29	9.6	29	76	9	196	34	3	26	35	1.73
44048516--44048738	30	7.5	30	80	9	194	34	2	24	38	1.68
44048410--44048738	60	5.6	59	78	10	248	34	3	25	36	1.73
44055345--44055394	22	2.3	22	82	0	64	50	0	4	46	1.20
44058318--44058387	23	3.0	22	73	10	59	44	15	8	31	1.77
44060369--44060398	5	6.0	5	92	0	51	43	0	0	56	0.99
44062656--44062760	50	2.1	50	89	0	156	36	19	24	20	1.95
44062670--44062792	50	2.5	50	83	0	147	34	21	22	21	1.96
44062817--44063226	40	10.3	40	74	7	300	30	25	17	26	1.97
44062810--44063226	79	5.3	80	84	5	508	30	25	16	26	1.97
44062818--44063226	159	2.6	158	84	5	522	30	25	16	26	1.97
44063684--44063708	5	5.0	5	100	0	50	60	0	0	40	0.97
44064992--44065030	10	3.9	11	78	21	50	33	0	7	58	1.26
44064999--44065050	21	2.5	21	81	12	63	30	0	5	63	1.18
44078179--44078221	19	2.3	19	84	8	52	58	4	0	37	1.19
44079679--44079720	22	2.0	22	86	13	61	78	2	2	16	0.96
44079680--44079731	12	4.2	12	79	13	52	78	1	1	17	0.93
44080658--44080696	21	1.9	20	89	5	60	30	5	33	30	1.79
44082474--44082534	22	2.8	22	85	7	72	72	3	11	13	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44082500--44082529	15	1.9	16	93	6	53	70	3	13	13	1.30
44083329--44083371	19	2.3	19	84	8	52	58	4	0	37	1.19
44101523--44101552	14	2.1	14	100	0	60	43	0	0	56	0.99
44101526--44101578	14	3.9	14	72	25	51	49	0	1	49	1.12
44100516--44102271	717	2.4	718	87	6	2505	34	9	14	41	1.78
44101896--44101945	26	2.0	25	85	11	68	54	2	2	42	1.23
44101903--44101951	26	2.0	23	85	14	64	48	0	2	48	1.12
44101186--44102261	366	2.9	370	92	2	1705	35	9	13	41	1.78
44102525--44102558	12	2.8	12	86	0	50	61	2	8	26	1.40
44102638--44102694	2	29.0	2	96	3	107	50	0	0	49	1.00
44104424--44104466	6	7.2	6	94	0	59	0	16	44	39	1.48
44104424--44104466	12	3.6	12	90	0	68	0	16	44	39	1.48
44107338--44107423	34	2.5	34	84	3	111	22	13	30	33	1.93
44109809--44109871	13	4.8	13	84	0	81	38	6	19	36	1.77
44112000--44112035	17	2.1	17	94	0	63	22	8	22	47	1.77
44114530--44114581	26	2.0	25	85	7	68	55	0	0	44	0.99
44114528--44114577	19	2.4	21	71	25	52	58	0	0	42	0.98
44114515--44114589	27	2.7	27	78	13	82	50	1	1	46	1.18
44114667--44114695	2	14.5	2	100	0	58	51	0	0	48	1.00
44124140--44124202	27	2.4	27	81	7	67	46	0	6	47	1.28
44124174--44124219	19	2.3	21	82	14	62	36	0	4	58	1.18
44124177--44124218	18	2.2	20	87	8	61	35	0	4	59	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44126262--44126317	19	3.1	18	82	10	60	57	7	0	35	1.26
44126262--44126317	18	3.1	18	82	7	60	57	7	0	35	1.26
44144518--44144580	26	2.4	25	74	7	63	38	6	4	50	1.49
44150496--44150652	64	2.4	67	84	4	212	15	23	17	43	1.87
44156461--44156649	68	2.8	66	83	12	217	45	2	4	47	1.35
44156379--44156841	112	4.0	112	77	10	303	44	1	6	47	1.38
44156378--44156950	188	3.1	181	80	10	558	44	1	6	47	1.38
44156759--44156870	22	4.8	23	70	13	77	44	0	5	50	1.25
44156761--44156874	37	3.2	37	69	20	107	45	0	5	49	1.24
44156783--44156816	10	3.2	10	84	15	50	58	0	0	41	0.98
44156531--44156856	112	2.9	111	83	9	406	42	1	7	48	1.38
44156761--44156950	69	2.8	66	83	9	233	45	1	5	48	1.32
44156531--44156885	119	3.1	113	81	10	425	43	1	6	48	1.36
44156460--44157023	180	3.1	179	79	8	568	43	1	6	48	1.37
44156378--44157122	300	2.5	298	91	2	1178	43	1	5	49	1.36
44157035--44157060	4	6.5	4	100	0	52	26	0	0	73	0.84
44156643--44157023	188	2.1	181	85	5	496	43	1	6	48	1.37
44157007--44157245	46	5.1	46	72	14	127	42	1	3	51	1.29
44157076--44157143	15	4.6	15	77	3	84	48	1	0	50	1.10
44156832--44157137	111	2.7	112	84	7	377	41	1	4	52	1.30
44157170--44157247	16	4.7	16	71	6	57	51	2	1	44	1.23
44160155--44160231	40	1.9	40	92	5	129	20	24	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44160858--44160916	15	4.1	15	72	12	52	47	0	10	42	1.37
44161633--44161995	41	8.9	40	85	4	408	15	32	24	27	1.95
44161838--44161911	24	3.4	24	63	24	63	13	32	28	25	1.94
44164355--44164491	68	2.0	68	98	0	265	34	12	21	31	1.91
44164523--44164788	43	6.2	43	81	5	200	23	16	20	40	1.91
44164523--44164800	86	3.3	85	77	5	251	22	15	21	40	1.91
44164932--44165003	36	2.0	36	86	5	101	29	6	20	43	1.78
44167000--44167028	14	2.1	14	93	6	51	55	0	13	31	1.39
44173032--44173118	35	2.5	35	88	0	120	24	36	16	22	1.94
44173052--44173132	35	2.3	35	82	0	90	24	35	17	22	1.95
44173128--44173179	17	3.0	18	76	15	56	36	23	23	17	1.95
44174822--44174861	20	2.0	20	85	5	53	47	2	5	45	1.38
44175809--44175859	22	2.3	22	82	3	66	43	23	21	11	1.85
44179644--44179715	35	2.1	35	100	0	144	29	36	5	29	1.80
44180206--44180341	40	3.3	40	90	2	191	26	24	11	37	1.90
44180206--44180390	40	4.5	41	82	6	169	25	25	11	37	1.90
44181190--44181237	22	2.2	21	81	3	60	37	14	0	47	1.44
44185086--44185118	6	5.5	6	100	0	66	48	0	33	18	1.48
44185222--44185320	38	2.5	41	72	11	98	22	19	28	30	1.98
44186491--44186547	30	1.9	30	96	0	105	22	12	28	36	1.90
44186716--44186888	36	4.8	36	90	0	276	24	27	15	32	1.95
44186717--44186888	72	2.4	72	99	0	335	23	27	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44189636--44189789	84	1.9	82	87	5	229	41	11	17	29	1.84
44193763--44193793	14	2.2	14	94	0	53	51	0	0	48	1.00
44199102--44199136	17	2.1	17	89	10	54	60	0	0	40	0.97
44201399--44201445	24	2.0	23	83	4	58	51	12	25	10	1.72
44201423--44201538	22	5.1	23	78	12	116	42	22	23	12	1.87
44201454--44201538	22	3.9	22	88	0	125	42	24	21	11	1.86
44201454--44201538	44	1.9	44	92	0	143	42	24	21	11	1.86
44201443--44201540	22	4.4	22	85	1	124	41	23	23	11	1.86
44206752--44206818	31	2.2	30	82	17	77	43	1	4	50	1.31
44208642--44208676	7	5.0	7	92	0	61	40	28	17	14	1.88
44212951--44212990	18	2.2	18	90	0	62	27	2	2	67	1.16
44215309--44215363	26	2.0	27	86	13	78	36	9	9	45	1.68
44217238--44217276	6	6.5	6	87	0	51	23	30	0	46	1.53
44224406--44224445	20	2.0	21	90	5	64	7	10	20	62	1.50
44224448--44224510	23	2.8	22	76	7	63	11	7	12	68	1.40
44224450--44224515	12	5.7	12	78	5	73	9	7	15	68	1.39
44224595--44224692	43	2.3	42	92	3	178	34	14	20	30	1.92
44226551--44226651	38	2.6	40	71	10	100	21	19	28	29	1.98
44228693--44228738	15	2.9	15	87	6	56	4	30	0	65	1.12
44228703--44228738	17	2.1	17	94	5	63	5	33	0	61	1.19
44231571--44231756	30	6.2	30	88	5	243	34	24	1	39	1.63
44231562--44231756	90	2.2	90	85	8	272	35	24	1	38	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44239007--44239091	43	2.0	42	88	6	127	47	21	0	31	1.51
44239388--44239489	51	2.0	52	84	5	136	19	8	10	60	1.55
44243648--44244084	78	5.6	77	81	2	401	24	32	18	24	1.97
44243648--44244054	39	10.5	39	71	11	246	24	32	18	24	1.97
44243759--44244084	117	2.8	115	77	10	320	24	32	18	24	1.97
44243668--44244084	156	2.7	155	82	0	492	24	31	18	24	1.97
44243707--44244057	39	9.0	39	75	10	288	23	32	19	23	1.97
44245178--44245211	11	3.2	11	87	4	52	70	0	0	29	0.87
44246175--44246287	30	3.8	30	86	9	117	38	26	0	34	1.63
44246190--44246307	30	3.9	30	88	3	166	37	26	0	36	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182