genome.fa.s9.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  35  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13409954--13409999	2	23.0	2	90	0	74	54	0	0	45	0.99
13411360--13411398	21	1.9	21	94	5	71	51	15	12	20	1.76
13412139--13412180	17	2.4	18	88	11	61	61	2	2	33	1.21
13418967--13419013	24	2.0	24	86	0	67	53	2	0	44	1.12
13421689--13421750	30	2.1	30	82	17	76	32	3	19	45	1.66
13421824--13421882	29	2.0	30	83	3	75	50	11	5	32	1.61
13425192--13425229	20	1.9	20	94	0	67	42	2	10	44	1.52
13426496--13426550	24	2.3	24	90	6	85	49	1	5	43	1.36
13431861--13431937	20	4.0	20	67	16	54	61	1	1	36	1.13
13433387--13433447	28	2.2	28	82	11	72	54	8	4	32	1.52
13434062--13434101	21	1.9	21	85	10	55	40	5	15	40	1.68
13445304--13445355	22	2.3	23	83	9	63	50	0	1	48	1.12
13445984--13446012	13	2.1	14	93	6	51	48	6	10	34	1.64
13446110--13446153	19	2.2	20	84	4	54	72	6	0	20	1.07
13448427--13448489	24	2.6	24	87	0	90	25	12	9	52	1.69
13450410--13450472	24	2.6	24	89	0	99	23	14	11	50	1.74
13459166--13459225	31	2.0	31	86	3	86	43	8	11	36	1.71
13463016--13463059	18	2.4	19	81	11	56	22	50	9	18	1.75
13466681--13466775	48	2.0	48	91	0	154	31	13	38	15	1.87
13466846--13466887	13	3.2	13	80	16	50	28	9	19	42	1.82
13475655--13475867	59	3.6	57	75	9	169	37	7	23	32	1.81
13475710--13476014	29	10.3	30	69	14	104	33	3	25	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13475698--13475876	60	3.0	59	77	11	195	36	6	24	32	1.80
13475709--13476014	59	5.2	58	75	10	223	33	3	25	36	1.74
13475666--13475927	119	2.2	118	82	6	307	36	5	24	33	1.78
13475849--13476023	29	5.9	29	82	3	188	32	1	25	40	1.66
13477059--13477097	3	12.7	3	89	5	60	35	0	0	64	0.94
13477067--13477106	19	2.1	19	85	0	53	40	0	0	60	0.97
13477109--13477272	78	2.1	78	98	0	319	33	10	6	49	1.63
13478011--13478091	6	13.7	6	70	11	60	55	2	1	40	1.21
13478016--13478072	11	4.9	11	80	8	60	56	1	0	42	1.10
13478000--13478091	17	5.2	17	71	15	62	55	4	1	39	1.27
13478037--13478094	28	2.1	28	87	6	82	56	5	1	36	1.32
13478043--13478076	11	3.2	11	91	4	52	58	5	0	35	1.22
13480263--13480310	2	24.0	2	100	0	96	50	0	0	50	1.00
13480791--13480865	19	4.0	18	70	13	62	66	1	2	29	1.13
13481188--13481222	17	2.0	18	88	5	54	31	8	0	60	1.27
13482693--13482757	30	2.1	30	85	2	85	32	6	27	33	1.82
13483123--13483160	18	2.1	19	90	5	60	26	5	0	68	1.11
13486270--13486320	24	2.1	24	82	10	59	37	0	1	60	1.08
13512423--13512492	36	1.9	36	88	5	106	37	28	4	30	1.76
13514459--13514616	78	2.0	78	91	2	255	51	5	5	38	1.46
13517565--13517621	27	2.2	26	81	9	62	26	7	8	57	1.54
13520020--13520054	18	2.0	18	88	5	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13525046--13525101	3	18.7	3	100	0	112	67	0	32	0	0.91
13527740--13527790	24	2.1	24	82	7	59	50	9	5	33	1.59
13527988--13528042	28	2.0	28	83	13	71	36	3	3	56	1.34
13537310--13537348	19	2.1	19	85	0	51	10	15	0	74	1.07
13540668--13540713	23	2.0	23	82	0	56	36	2	6	54	1.39
13543341--13543380	9	4.4	9	84	9	55	77	0	2	20	0.88
13555559--13555591	15	2.2	15	100	0	66	0	21	45	33	1.52
13560205--13560302	39	2.5	39	80	6	92	55	5	5	34	1.44
13560199--13560275	29	2.7	29	75	13	79	58	3	6	31	1.42
13560814--13560847	17	2.0	17	94	0	59	32	0	0	67	0.91
13560814--13560853	18	2.3	17	86	4	53	35	0	0	65	0.93
13561347--13561388	23	1.9	21	85	9	57	35	0	14	50	1.43
13563657--13563702	18	2.6	18	82	6	58	39	4	0	56	1.19
13564725--13564786	31	2.0	32	84	9	83	69	6	9	14	1.35
13573465--13573526	21	2.8	22	75	9	63	43	0	0	56	0.99
13581254--13581291	19	2.0	19	89	0	58	34	7	21	36	1.82
13585814--13585858	24	1.9	23	86	4	63	48	4	2	44	1.35
13586987--13587024	3	13.0	3	94	5	69	0	31	0	68	0.90
13590822--13590859	2	19.5	2	89	5	60	44	0	2	52	1.14
13591420--13591445	6	4.3	6	100	0	52	50	15	34	0	1.45
13601902--13602041	69	2.0	69	98	0	271	25	19	20	35	1.96
13607492--13607629	58	2.4	58	81	10	158	31	2	31	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13607605--13607667	30	2.1	30	96	0	117	33	3	22	41	1.70
13609349--13609392	14	3.3	14	87	12	74	18	13	29	38	1.89
13609350--13609405	26	2.2	26	83	0	67	25	14	30	30	1.95
13609476--13609566	6	15.8	6	68	22	54	51	1	3	43	1.25
13609477--13609569	17	5.5	16	76	17	73	50	1	3	45	1.25
13609493--13609569	11	6.8	11	76	10	75	50	1	3	44	1.28
13610054--13610655	68	8.9	68	94	0	999	27	21	18	33	1.96
13622558--13622655	28	3.4	29	74	4	99	31	4	31	32	1.77
13622672--13622734	30	2.1	30	96	0	117	33	3	22	41	1.70
13624430--13624468	12	2.9	14	81	14	55	20	17	23	38	1.93
13624426--13624469	14	3.3	14	81	12	65	18	15	27	38	1.91
13624427--13624482	26	2.2	26	80	6	60	25	16	28	30	1.96
13624572--13624633	23	2.7	22	80	9	70	51	3	4	40	1.39
13624570--13624646	11	6.8	11	76	10	75	50	2	3	42	1.34
13627631--13627673	22	2.0	22	85	0	59	23	4	0	72	1.04
13632444--13632502	29	2.1	30	87	9	88	49	3	0	47	1.18
13633034--13633075	17	2.7	15	77	22	50	33	0	2	64	1.07
13633138--13633168	8	3.8	8	91	8	53	51	0	0	48	1.00
13634472--13634519	26	1.9	24	87	8	69	54	4	2	39	1.32
13634514--13634539	12	2.2	12	100	0	52	69	7	0	23	1.14
13634522--13634557	18	1.9	18	88	5	54	72	13	0	13	1.13
13634515--13634602	41	2.1	43	89	4	135	64	12	2	20	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13634919--13634965	24	2.0	22	84	8	58	68	2	2	27	1.13
13635213--13635237	5	5.0	5	100	0	50	80	0	0	20	0.72
13645734--13645800	32	2.1	32	100	0	134	28	20	22	28	1.99
13649446--13649532	44	2.0	44	93	0	147	29	19	16	34	1.93
13651016--13651040	13	1.9	13	100	0	50	56	0	0	44	0.99
13651415--13651462	16	3.0	15	76	11	51	62	2	0	35	1.07
13653169--13653229	28	2.1	28	87	3	86	29	8	26	36	1.85
13653167--13653319	29	5.2	29	76	11	118	32	7	25	35	1.83
13653212--13653474	30	9.0	29	77	9	198	34	4	24	36	1.76
13653224--13653455	116	2.0	118	80	6	267	34	4	24	36	1.76
13653212--13653472	59	4.5	59	74	14	204	34	4	24	37	1.75
13653806--13653847	18	2.4	17	88	7	66	33	7	26	33	1.83
13654977--13655057	6	14.2	6	69	14	55	51	3	1	43	1.27
13654977--13655085	17	6.4	17	74	3	103	50	6	1	41	1.39
13654977--13655085	51	2.1	51	84	0	137	50	6	1	41	1.39
13659120--13659174	2	27.5	2	100	0	110	49	0	0	50	1.00
13659241--13659284	22	2.0	23	86	4	63	63	2	6	27	1.31
13660464--13660518	24	2.3	24	100	0	110	14	36	27	21	1.93
13664579--13664607	10	3.0	10	95	5	51	48	0	0	51	1.00
13665495--13665554	15	3.9	15	77	2	57	56	1	13	28	1.47
13665498--13665548	16	3.2	16	80	5	50	62	1	11	23	1.39
13665514--13665557	15	2.9	15	86	0	61	59	0	11	29	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13665983--13666013	15	2.1	15	100	0	62	32	6	12	48	1.67
13670889--13670919	3	10.3	3	100	0	62	35	0	0	64	0.94
13672152--13672181	3	9.7	3	92	7	51	33	0	0	66	0.92
13678475--13678572	47	2.1	47	96	0	178	21	15	33	29	1.94
13678636--13678700	23	2.8	23	100	0	130	40	7	12	40	1.71
13680995--13681063	36	1.9	36	88	5	104	20	15	15	47	1.82
13681483--13681852	67	5.6	65	84	4	474	19	25	19	36	1.95
13684306--13684364	29	2.0	29	86	0	82	25	27	23	23	2.00
13684810--13684874	21	3.2	20	76	12	71	43	3	1	52	1.26
13684809--13684873	11	6.4	11	68	21	52	41	3	1	53	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182