genome.fa.s9.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  61  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19759070--19759109	21	1.9	21	94	0	71	42	12	17	27	1.85
19760281--19760340	5	13.0	5	79	13	51	18	3	0	78	0.89
19768057--19768098	18	2.4	18	88	4	59	19	11	11	57	1.65
19776287--19776319	17	1.9	17	88	11	50	48	0	3	48	1.17
19782119--19782179	27	2.2	28	80	11	72	14	1	32	50	1.53
19782688--19782726	14	2.8	14	84	0	60	30	23	28	17	1.97
19788683--19788734	27	1.9	27	84	7	70	50	7	21	21	1.73
19789631--19789717	27	3.2	27	81	0	75	20	24	16	39	1.92
19789874--19789979	45	2.4	45	85	0	131	27	19	13	39	1.89
19789901--19789998	45	2.2	45	84	0	124	25	19	13	41	1.87
19798425--19798487	29	2.2	29	100	0	126	33	14	25	26	1.94
19800231--19800269	16	2.4	16	86	0	60	41	23	12	23	1.88
19805923--19805969	16	2.8	17	84	9	62	2	21	0	76	0.89
19806532--19806573	18	2.4	18	80	4	50	50	11	21	16	1.77
19808841--19808879	21	1.9	21	89	5	62	66	7	12	12	1.43
19816513--19816562	22	2.4	22	87	12	63	58	10	22	10	1.60
19816521--19816564	22	2.0	22	100	0	88	54	13	18	13	1.71
19817743--19817893	80	1.9	80	85	0	212	22	19	25	32	1.97
19824880--19825033	80	1.9	80	84	2	202	24	18	25	31	1.98
19853985--19854481	248	2.0	248	92	1	827	28	19	17	34	1.95
19860482--19860511	14	2.2	14	94	5	53	30	23	10	36	1.87
19861916--19861958	21	2.1	20	87	12	61	25	4	9	60	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19865054--19865118	28	2.3	28	86	0	85	24	12	29	33	1.92
19866730--19866780	15	3.3	15	79	15	59	31	7	17	43	1.78
19871159--19871218	17	3.5	17	79	2	66	56	11	13	18	1.66
19885263--19885310	21	2.3	21	88	0	69	62	0	35	2	1.07
19886292--19886322	16	1.9	16	93	0	53	77	0	22	0	0.77
19893406--19893453	25	1.9	25	95	0	87	29	22	20	27	1.99
19893407--19893471	25	2.6	25	85	0	76	32	24	16	26	1.96
19894860--19894897	20	1.9	20	94	0	67	23	23	39	13	1.90
19901906--19901948	9	4.8	9	80	8	52	0	39	9	51	1.34
19901906--19901948	18	2.4	17	88	7	59	0	39	9	51	1.34
19909515--19909564	20	2.5	20	80	0	64	28	12	34	26	1.92
19910150--19910185	16	2.2	17	90	9	58	22	5	16	55	1.62
19919081--19919133	24	2.2	24	96	0	97	43	18	13	24	1.86
19925833--19925857	12	2.1	12	100	0	50	40	0	44	16	1.47
19933331--19933380	21	2.4	21	86	0	64	22	22	10	46	1.81
19934718--19934775	21	2.6	22	81	8	64	68	0	27	3	1.05
19934718--19934775	25	2.4	24	80	8	64	68	0	27	3	1.05
19934720--19934778	9	6.6	9	72	12	50	69	0	27	3	1.04
19934720--19934776	28	2.0	29	86	3	80	70	0	26	3	1.03
19935466--19935514	16	3.2	16	70	21	50	61	6	2	30	1.32
19936830--19936914	43	2.0	43	83	4	109	30	12	10	45	1.76
19937470--19937561	45	2.0	45	91	4	150	33	30	16	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19937831--19937871	21	2.0	21	85	0	55	43	26	4	24	1.74
19937896--19937938	14	3.0	14	83	6	50	51	18	0	30	1.47
19940724--19940752	15	1.9	15	100	0	58	68	0	0	31	0.89
19940725--19940758	15	2.3	15	89	0	50	70	2	0	26	1.01
19940720--19940767	19	2.5	19	84	15	64	66	2	0	31	1.03
19940722--19940763	21	2.1	21	91	8	70	69	2	0	28	1.01
19940863--19940909	19	2.2	23	85	14	66	0	31	4	63	1.13
19941158--19941231	35	2.1	35	83	14	91	44	2	5	47	1.40
19943017--19943056	21	1.9	21	89	0	62	30	17	15	37	1.90
19943851--19943887	14	2.6	14	86	4	56	48	5	13	32	1.65
19953768--19953797	15	1.9	16	93	6	53	73	3	0	23	0.98
19960376--19960427	22	2.3	22	86	3	68	48	1	19	30	1.60
19961287--19961466	51	3.5	51	83	3	209	33	16	22	27	1.95
19962221--19962280	21	2.8	22	80	7	70	38	8	18	35	1.81
19968573--19968642	36	1.9	36	91	0	113	57	5	18	18	1.60
19969978--19970015	3	12.7	3	100	0	76	34	0	0	65	0.93
19971251--19971327	37	2.1	37	85	4	102	53	7	5	33	1.52
19975668--19975728	32	2.0	30	87	6	86	31	8	24	36	1.85
19975668--19975755	30	2.9	30	83	10	90	34	6	23	35	1.82
19975713--19975808	29	3.3	29	84	12	117	33	4	19	42	1.71
19975702--19975829	30	4.3	29	80	15	131	35	4	20	39	1.73
19975714--19975836	58	2.1	58	82	11	144	35	4	19	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19975785--19975844	30	2.0	30	86	0	84	41	5	15	38	1.68
19976573--19976619	17	2.9	16	82	14	53	4	6	8	80	1.00
19976583--19976619	14	2.4	17	86	13	53	2	8	5	83	0.88
19977466--19977703	124	1.9	124	90	0	377	21	21	19	37	1.94
19979353--19979717	186	2.0	183	95	1	658	28	26	14	30	1.95
19982627--19982972	89	3.9	90	84	3	362	36	4	21	37	1.74
19982625--19982920	30	9.9	30	78	9	257	37	4	21	36	1.75
19983835--19983873	12	3.2	12	85	0	51	58	0	2	38	1.12
19984307--19984336	3	10.0	3	100	0	60	33	0	0	66	0.92
19994481--19994519	17	2.4	16	84	16	53	64	0	35	0	0.94
19995934--19995973	21	2.0	21	95	5	73	22	10	15	52	1.71
20003654--20003689	16	2.3	16	90	4	56	38	5	0	55	1.23
20014436--20014476	15	2.5	17	80	11	59	65	0	0	34	0.93
20017272--20017456	95	1.9	95	95	0	334	30	9	25	34	1.88
20018994--20019029	13	2.8	13	95	0	63	30	25	2	41	1.69
20021162--20021205	22	2.1	21	87	8	63	27	0	2	70	0.99
20027346--20027388	18	2.3	19	88	4	61	60	0	4	34	1.17
20029529--20030288	378	2.0	378	97	0	1423	42	20	13	22	1.87
20033004--20033078	14	5.3	13	73	16	60	18	4	0	77	0.92
20033015--20033087	17	4.8	16	70	21	50	17	4	0	78	0.91
20032992--20033080	24	3.9	23	71	20	71	19	3	1	76	0.99
20033035--20033112	24	3.2	24	80	12	72	15	6	1	76	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20052023--20052076	19	3.0	18	86	5	74	27	18	27	25	1.98
20056801--20056844	18	2.4	18	82	17	56	6	38	4	50	1.50
20057059--20057153	30	3.2	30	98	0	181	24	53	6	15	1.65
20059122--20059174	22	2.4	21	81	9	61	56	11	16	15	1.67
20059124--20059180	23	2.5	23	80	8	64	54	14	14	17	1.71
20059710--20059757	22	2.2	22	85	3	71	43	6	0	50	1.27
20065269--20065328	23	2.5	24	82	15	72	68	0	28	3	1.05
20065271--20065329	18	3.4	16	84	11	55	69	0	27	3	1.04
20065271--20065317	3	16.3	3	79	16	55	70	0	27	2	0.99
20090054--20090086	9	3.7	9	100	0	66	30	0	0	69	0.88
20090932--20090978	15	3.2	15	74	14	53	44	6	0	48	1.28
20090932--20090978	19	2.3	20	82	7	60	44	6	0	48	1.28
20092831--20092855	3	8.3	3	100	0	50	0	32	0	68	0.90
20093657--20093710	25	2.2	25	93	0	90	31	25	0	42	1.55
20095125--20095202	25	3.3	23	76	13	79	41	17	21	19	1.91
20095136--20095201	25	2.8	25	84	6	84	40	19	21	18	1.91
20095381--20095450	27	2.6	27	97	2	133	44	18	0	37	1.50
20107617--20107691	13	6.2	12	72	18	50	20	1	5	73	1.10
20107735--20107797	4	15.2	4	75	21	51	23	1	4	69	1.16
20107889--20107985	17	5.8	16	76	17	74	23	0	4	72	1.02
20107887--20108078	44	4.2	46	71	26	165	22	2	5	69	1.19
20107899--20107996	31	3.2	32	78	16	111	23	0	4	72	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20107892--20107980	22	4.1	21	73	18	67	23	0	4	71	1.03
20107946--20108009	26	2.4	28	82	15	82	23	1	4	70	1.15
20107889--20108103	71	3.1	70	87	4	303	22	3	5	69	1.23
20107878--20108074	17	11.1	17	69	20	66	22	2	5	69	1.22
20107889--20108074	9	22.4	8	68	22	68	22	2	5	69	1.19
20108208--20108319	29	3.7	29	70	12	91	31	2	5	60	1.33
20109669--20109720	4	12.8	4	82	17	63	71	0	28	0	0.87
20109657--20109720	32	1.9	32	90	9	101	68	0	31	0	0.90
20109677--20109729	24	2.2	25	89	3	81	67	1	28	1	1.11
20111434--20111533	43	2.3	43	89	3	157	31	10	13	46	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182