genome.fa.s9.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  106  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34443393--34443614	89	2.5	89	84	5	286	38	3	20	36	1.70
34443376--34443569	59	3.2	59	82	2	217	40	3	18	38	1.66
34443755--34443797	21	2.0	22	95	4	79	41	4	0	53	1.21
34444581--34444661	6	14.3	6	71	20	59	51	4	0	43	1.23
34444586--34444637	11	4.8	11	79	13	63	55	1	0	42	1.10
34444550--34444669	17	7.1	17	76	9	111	49	3	0	46	1.24
34444653--34444677	12	2.1	12	100	0	50	52	0	8	40	1.31
34444937--34445694	92	8.2	92	97	0	1419	36	15	13	33	1.88
34456638--34456816	96	1.9	97	81	4	220	38	11	20	29	1.87
34457037--34457114	28	2.8	29	75	16	83	30	5	29	34	1.79
34457067--34457312	30	8.1	30	71	14	130	34	4	25	36	1.75
34459209--34459337	6	22.8	6	67	23	75	51	3	0	44	1.19
34459208--34459330	11	11.0	11	68	15	74	52	4	0	43	1.20
34459209--34459345	17	8.1	17	80	8	145	50	3	0	45	1.24
34459329--34459353	12	2.1	12	100	0	50	52	0	8	40	1.31
34462350--34462402	27	2.0	27	85	7	72	20	0	3	75	0.96
34473340--34473371	2	16.0	2	100	0	64	50	0	0	50	1.00
34477018--34477157	68	2.0	69	86	1	192	41	15	8	34	1.78
34479064--34479100	13	2.7	13	91	8	56	24	2	0	72	0.97
34479064--34479105	15	2.9	15	89	6	61	28	2	0	69	1.01
34479053--34479095	20	2.2	20	83	4	52	23	2	0	74	0.93
34479056--34479101	14	3.5	13	82	11	58	26	2	0	71	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34485787--34485834	17	3.0	15	78	9	51	70	6	4	18	1.25
34493302--34493449	36	4.1	36	86	0	190	27	26	12	33	1.92
34493439--34493494	26	2.2	26	83	6	69	28	28	17	25	1.98
34499135--34499210	19	4.0	19	84	6	109	25	31	18	25	1.97
34499129--34499210	38	2.1	40	93	4	141	26	30	18	24	1.98
34504140--34504195	2	28.0	2	96	0	103	50	1	0	48	1.11
34507652--34507710	4	14.5	4	89	3	91	71	1	0	27	0.96
34508015--34508055	19	2.2	19	86	0	55	68	0	0	31	0.90
34508012--34508056	10	4.6	10	83	5	56	68	0	0	31	0.89
34513175--34513223	3	16.3	3	100	0	98	65	0	0	34	0.93
34514047--34514141	36	2.7	35	78	13	99	61	4	1	33	1.22
34514606--34514671	19	3.4	19	77	8	71	30	3	3	63	1.24
34514606--34514731	19	6.3	21	70	18	65	34	2	3	60	1.26
34514606--34514731	10	12.7	10	70	11	80	34	2	3	60	1.26
34514707--34514747	19	2.1	20	86	4	57	34	0	7	58	1.26
34514805--34514870	11	6.6	10	73	13	55	22	3	4	69	1.20
34516509--34516603	20	4.8	19	80	7	100	11	33	21	33	1.89
34516509--34516606	40	2.5	40	87	0	142	11	33	21	33	1.89
34523543--34523592	26	2.0	24	88	7	73	52	6	4	38	1.45
34533943--34533986	18	2.4	18	84	0	61	22	27	20	29	1.99
34534191--34534243	24	2.2	24	82	0	70	33	1	9	54	1.43
34542630--34542672	18	2.3	19	88	4	61	32	6	4	55	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34544804--34544857	20	2.8	18	81	13	54	57	3	1	37	1.27
34545916--34545995	6	13.3	6	81	15	94	46	2	0	51	1.14
34545905--34545980	17	4.7	18	82	12	62	40	2	1	55	1.22
34545916--34545990	31	2.5	29	87	12	116	44	2	0	53	1.14
34545914--34545987	37	2.0	36	87	10	105	43	2	0	54	1.14
34545916--34545995	17	4.4	18	80	14	94	46	2	0	51	1.14
34546658--34546729	16	4.7	15	73	14	67	52	1	1	44	1.18
34546671--34546727	13	4.4	13	72	14	55	52	0	1	45	1.11
34546668--34546748	19	4.4	19	73	17	64	56	1	1	40	1.15
34546643--34546732	16	5.3	15	70	22	54	54	1	1	43	1.14
34547830--34548031	30	6.7	30	82	4	246	38	23	2	35	1.70
34559835--34560438	68	8.9	68	92	1	975	34	16	20	28	1.95
34560442--34560610	92	1.8	92	94	2	304	34	18	16	30	1.93
34560900--34560955	6	9.3	6	78	21	64	46	1	0	51	1.11
34560889--34560933	17	2.7	18	89	6	60	40	2	2	55	1.24
34561626--34561687	7	9.0	7	80	16	67	50	0	1	48	1.10
34561617--34561691	16	4.8	16	74	19	68	50	1	1	46	1.18
34561617--34561687	19	3.7	19	81	5	72	50	1	1	46	1.18
34562796--34563000	30	6.9	30	81	6	220	38	24	2	34	1.69
34562796--34563058	60	4.4	60	80	5	270	38	25	2	33	1.70
34562801--34563048	30	8.4	29	76	13	152	38	24	2	34	1.69
34564677--34564736	31	1.9	31	86	0	84	40	18	8	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34564930--34564963	17	2.1	17	89	10	54	26	0	5	67	1.13
34565106--34565159	25	2.2	25	83	9	67	59	3	1	35	1.26
34565112--34565159	25	1.9	25	87	8	71	60	4	2	33	1.27
34569933--34569998	34	1.9	33	82	17	82	33	3	0	63	1.10
34570526--34570571	23	2.0	23	82	0	56	63	6	6	23	1.43
34575707--34575745	18	2.2	18	86	9	53	20	23	0	56	1.42
34576759--34576807	16	2.9	18	77	20	52	48	0	0	51	1.00
34597958--34598199	30	8.1	28	77	13	191	37	22	4	35	1.75
34597958--34598201	60	4.1	60	82	5	262	36	22	4	36	1.75
34597963--34598201	90	2.7	90	81	5	304	37	21	4	36	1.73
34598548--34598746	104	1.9	104	84	5	269	30	13	19	37	1.90
34601473--34601509	16	2.3	17	81	9	51	29	21	10	37	1.88
34603312--34603349	19	2.1	18	95	5	67	76	0	23	0	0.79
34604329--34604737	50	8.3	49	72	10	267	34	16	31	17	1.92
34604329--34604846	99	5.3	99	81	4	541	33	16	31	18	1.93
34604312--34604846	198	2.7	197	84	2	644	34	16	31	18	1.93
34604775--34604916	49	2.9	49	79	2	142	35	16	26	21	1.95
34604930--34604992	21	3.0	20	72	17	65	33	14	30	22	1.93
34605124--34605561	42	10.6	42	86	3	604	29	26	17	26	1.98
34605124--34605561	123	3.6	123	88	1	646	29	26	17	26	1.98
34605124--34605561	165	2.7	166	89	2	677	29	26	17	26	1.98
34607315--34607536	30	7.5	30	74	9	170	40	22	3	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34607315--34607536	59	3.8	58	74	9	182	40	22	3	34	1.71
34607381--34607563	30	6.2	30	75	5	104	38	22	4	33	1.74
34609885--34609912	3	9.3	3	100	0	56	64	0	0	35	0.94
34612816--34613441	70	9.1	70	76	5	427	32	21	18	27	1.97
34612909--34613148	130	1.8	130	84	0	327	32	23	18	25	1.97
34613915--34614096	70	2.6	69	82	1	220	30	24	19	26	1.98
34614031--34614187	69	2.3	69	80	4	174	29	29	17	23	1.97
34614173--34614452	69	4.1	68	80	2	287	27	26	17	28	1.98
34629870--34629905	15	2.5	15	90	4	56	63	5	8	22	1.43
34631426--34631894	101	4.6	99	76	8	358	26	20	18	33	1.96
34631594--34631872	50	5.5	50	74	7	201	26	21	19	31	1.97
34631594--34631874	51	5.6	50	72	4	226	26	21	19	32	1.97
34645162--34645232	37	1.9	37	85	0	97	36	14	18	30	1.90
34646391--34646463	17	4.2	17	72	8	58	49	12	19	19	1.79
34646408--34646477	34	2.1	34	83	5	88	50	11	18	20	1.77
34650889--34650936	21	2.3	21	89	7	71	72	4	0	22	1.01
34650898--34650937	10	3.8	11	90	9	66	75	0	0	25	0.81
34650908--34650951	14	3.1	14	83	0	52	72	4	0	22	1.02
34650978--34651025	11	4.2	11	76	10	51	77	2	2	18	0.97
34650900--34651036	17	7.8	17	64	20	59	69	3	5	21	1.24
34653777--34653814	15	2.5	15	87	12	51	21	2	2	73	1.07
34653801--34653884	41	2.1	40	95	2	150	33	4	3	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34665813--34665860	4	12.0	4	84	8	53	0	41	0	58	0.98
34666926--34666964	17	2.3	17	86	8	53	48	23	12	15	1.79
34680986--34681035	17	2.9	17	84	0	64	42	2	4	52	1.31
34682123--34682162	12	3.2	12	85	7	53	70	0	20	10	1.16
34682835--34682972	60	2.3	60	81	6	163	34	24	4	36	1.76
34682855--34683206	30	12.0	30	72	11	151	35	25	3	34	1.75
34682855--34683031	90	2.0	90	82	6	216	34	24	3	36	1.74
34683010--34683228	87	2.5	86	83	7	264	36	25	4	33	1.77
34683186--34683288	28	3.8	27	83	7	102	28	27	11	33	1.91
34682994--34683304	29	10.9	29	72	12	164	33	26	6	33	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182