genome.fa.s9.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  149  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45877929--45877981	27	1.9	28	92	3	90	33	24	24	16	1.96
45878063--45878092	15	2.0	15	93	0	51	20	3	33	43	1.68
45878076--45878122	21	2.2	22	92	3	78	23	0	31	44	1.54
45878493--45878567	11	6.5	11	73	14	62	69	1	24	5	1.17
45878493--45878565	23	3.1	23	75	11	67	69	1	23	5	1.17
45879566--45879613	23	2.0	23	88	8	69	50	0	6	43	1.27
45887415--45887460	13	3.4	13	88	8	65	52	2	4	41	1.33
45906003--45906050	24	2.0	24	83	0	60	39	2	2	56	1.23
45906016--45906049	15	2.2	16	89	5	52	32	2	0	64	1.08
45908407--45908595	100	1.9	99	86	6	274	38	22	16	22	1.93
45913638--45913664	10	2.7	10	100	0	54	37	22	22	18	1.95
45923762--45923786	13	1.9	13	100	0	50	44	8	16	32	1.76
45925096--45925138	18	2.3	18	80	4	50	58	4	0	37	1.19
45930003--45930037	17	2.0	18	88	5	54	17	17	5	60	1.55
45932045--45932202	43	3.7	43	89	2	237	19	29	26	24	1.99
45932551--45932698	66	2.2	66	87	2	217	16	22	15	45	1.84
45935902--45935995	8	11.8	8	72	21	65	52	3	1	43	1.24
45935902--45935981	30	2.6	29	83	13	99	52	3	1	42	1.27
45935900--45935946	22	2.2	20	85	7	67	55	0	0	44	0.99
45936033--45936134	8	12.2	8	68	22	59	50	3	0	45	1.20
45936024--45936742	18	42.3	18	63	21	126	46	5	2	46	1.38
45936046--45936244	49	4.1	49	85	3	267	46	6	2	44	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45936300--45936763	49	9.3	49	82	9	551	45	5	1	48	1.34
45936371--45936536	8	19.4	9	65	25	60	46	4	0	48	1.26
45936046--45936773	306	2.4	306	94	1	1307	45	5	2	46	1.40
45936431--45936554	26	5.1	24	66	22	71	45	5	0	48	1.31
45936610--45936763	48	3.2	49	88	2	222	45	5	0	48	1.29
45936015--45936763	257	2.9	253	83	8	810	46	5	2	46	1.38
45938947--45939310	41	8.9	41	83	7	325	24	26	23	26	2.00
45938890--45939309	81	5.2	81	78	10	335	24	26	23	26	2.00
45941659--45941699	19	2.2	19	86	8	57	48	9	14	26	1.75
45941866--45942275	30	13.9	29	78	13	335	37	1	25	35	1.67
45941920--45942237	29	10.8	28	73	12	113	38	2	25	34	1.69
45941910--45942275	89	4.1	88	82	9	395	37	2	25	34	1.69
45941866--45942275	59	6.9	60	79	9	375	37	1	25	35	1.67
45943395--45943454	28	2.0	32	84	12	83	51	0	5	43	1.23
45944093--45944190	17	5.8	16	77	5	88	57	4	2	36	1.30
45945970--45946208	51	4.6	51	86	3	311	32	14	23	30	1.94
45948833--45948878	20	2.3	20	100	0	92	39	8	6	45	1.61
45949130--45949172	21	2.0	21	90	0	68	23	20	25	30	1.99
45949951--45950018	3	24.0	3	78	16	65	0	36	0	63	0.95
45949948--45950018	17	4.2	16	80	15	81	0	36	0	63	0.95
45949951--45950018	23	3.5	20	78	18	72	0	36	0	63	0.95
45951229--45951271	24	1.9	23	86	13	63	41	9	9	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45959041--45959228	96	2.0	96	94	0	331	32	17	17	32	1.93
45959750--45959816	31	2.2	31	92	5	111	52	0	28	19	1.46
45959879--45959911	17	1.9	17	100	0	66	48	0	3	48	1.17
45961352--45961400	5	9.8	5	80	8	55	18	4	2	75	1.06
45962840--45962879	21	2.0	19	85	9	53	20	2	5	72	1.15
45963274--45963311	17	2.2	17	90	0	58	47	26	10	15	1.78
45971683--45971739	29	2.0	28	83	6	71	45	3	7	43	1.48
45973715--45973771	24	2.4	24	96	0	105	28	14	5	52	1.62
45982298--45982335	19	2.0	19	89	0	58	23	0	7	68	1.16
45985641--45985691	23	2.3	23	80	10	61	7	23	41	27	1.82
45989939--45989991	18	2.8	19	85	5	63	67	1	3	26	1.17
45993462--45993491	15	1.9	16	93	6	53	53	3	0	43	1.17
46001256--46001284	3	9.7	3	100	0	58	34	34	0	31	1.58
46002112--46002171	31	1.9	31	86	0	84	43	18	3	35	1.67
46007358--46007395	18	2.1	19	85	5	51	68	2	5	23	1.23
46008089--46008122	6	5.7	6	96	0	50	17	5	0	76	0.98
46016454--46016509	29	1.9	29	82	7	69	51	3	1	42	1.29
46016715--46016765	26	2.0	26	92	0	84	31	9	11	47	1.73
46023429--46023504	35	2.2	35	83	9	93	36	5	1	56	1.30
46023566--46023602	19	1.9	19	88	0	56	59	2	2	35	1.26
46034929--46035087	82	1.9	82	98	0	309	24	20	16	38	1.93
46036488--46036527	21	2.0	21	90	9	66	42	10	15	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46037537--46037600	32	2.0	32	81	6	76	39	1	1	57	1.17
46045688--46045930	123	2.0	123	81	4	292	39	6	11	41	1.69
46048821--46048846	13	2.0	13	100	0	52	38	15	0	46	1.46
46051552--46051586	16	2.2	16	90	10	54	8	22	0	68	1.16
46054038--46054075	17	2.3	17	90	4	60	23	7	36	31	1.84
46061340--46061371	2	16.0	2	100	0	64	50	0	50	0	1.00
46068266--46068305	18	2.1	20	86	9	57	22	5	2	70	1.19
46084111--46084161	12	4.2	12	79	0	57	60	23	7	7	1.50
46084111--46084161	24	2.1	24	92	0	84	60	23	7	7	1.50
46091119--46091251	59	2.2	60	86	5	180	24	14	13	47	1.80
46091601--46091713	60	1.9	60	83	7	149	48	14	15	21	1.80
46092944--46092999	27	2.0	27	83	13	69	55	0	0	44	0.99
46092965--46093005	20	2.1	20	86	4	57	56	2	0	41	1.13
46092958--46093005	18	2.6	17	75	15	51	52	2	0	45	1.12
46100772--46100870	23	4.3	23	77	8	62	42	23	22	12	1.87
46100820--46100870	23	2.2	23	92	0	84	47	21	21	9	1.79
46105717--46105862	79	1.8	79	91	2	240	23	19	25	31	1.98
46105897--46106055	82	2.0	77	83	8	194	25	20	24	30	1.99
46106090--46106129	16	2.5	16	95	0	71	32	7	32	27	1.85
46106300--46106455	57	2.7	58	83	10	194	53	1	1	43	1.20
46106291--46106383	26	3.4	27	69	15	82	53	1	1	44	1.14
46115669--46115697	3	9.7	3	100	0	58	34	0	65	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46117374--46117406	16	2.1	16	88	11	50	39	3	12	45	1.57
46118273--46118346	24	3.1	23	79	11	87	58	1	0	40	1.07
46120247--46120275	6	4.8	6	100	0	58	51	0	34	13	1.42
46125185--46125217	16	2.0	17	88	5	50	51	0	0	48	1.00
46132701--46132888	99	1.9	99	98	0	367	22	21	7	48	1.76
46150358--46150391	18	1.9	17	94	5	59	70	0	23	5	1.09
46150628--46150673	17	2.8	16	81	18	51	78	2	8	10	1.05
46150603--46150815	111	1.9	108	81	12	256	67	1	15	15	1.30
46150629--46150901	150	1.8	147	84	8	354	65	1	16	15	1.34
46153986--46154047	26	2.3	26	94	5	106	40	6	0	53	1.27
46156998--46157024	13	2.1	13	100	0	54	29	18	22	29	1.97
46161417--46161498	28	2.9	28	83	0	101	29	25	17	28	1.97
46162396--46162437	20	2.1	19	86	8	57	26	7	14	52	1.67
46164137--46164174	3	12.7	3	89	10	60	71	0	0	28	0.87
46169553--46169784	63	3.8	63	78	7	187	31	17	13	36	1.89
46169581--46169785	62	3.4	61	80	7	211	31	16	14	37	1.89
46169742--46169826	41	2.1	41	86	8	120	30	20	12	36	1.90
46169684--46169872	99	1.9	104	85	5	271	30	20	13	34	1.92
46180294--46180337	19	2.2	21	84	8	56	52	4	2	40	1.34
46189639--46189699	30	2.1	30	84	9	81	32	1	0	65	1.02
46189639--46189700	28	2.2	29	82	8	74	33	1	0	64	1.03
46190606--46190696	41	2.2	41	98	0	173	27	20	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46192600--46192669	30	2.3	31	85	7	90	48	17	14	20	1.81
46194156--46194198	22	2.0	22	86	9	61	34	0	4	60	1.17
46195619--46195719	38	2.6	40	71	10	100	21	19	28	29	1.98
46200214--46200243	11	2.6	11	94	5	51	63	6	3	26	1.35
46201278--46201302	12	2.1	12	100	0	50	24	0	0	76	0.80
46207317--46207355	20	1.9	20	89	5	60	35	0	0	64	0.94
46211986--46212037	10	4.9	10	78	7	50	38	1	0	59	1.08
46216473--46216510	20	1.9	20	84	10	51	5	7	5	81	0.98
46216473--46216518	21	2.2	20	84	7	56	8	8	6	76	1.17
46220855--46220887	16	2.1	16	94	0	57	75	9	0	15	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182