genome.fa.s9.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  132  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41499461--41499503	17	2.6	16	82	10	50	62	9	4	23	1.44
41502013--41502039	14	1.9	14	100	0	54	40	22	7	29	1.81
41502735--41502779	3	15.0	3	81	9	56	62	2	2	33	1.20
41502726--41502776	15	3.4	15	88	0	75	60	3	1	33	1.26
41503929--41504019	30	3.1	29	81	12	114	35	29	3	31	1.74
41503929--41504043	29	3.9	29	82	6	117	34	27	3	33	1.74
41503939--41504161	59	3.8	59	77	13	203	33	25	4	36	1.75
41503939--41504139	30	6.8	29	78	10	151	32	26	3	37	1.75
41503939--41504165	89	2.6	89	79	7	241	33	26	3	36	1.75
41504246--41504274	8	3.8	8	95	4	51	24	0	0	75	0.80
41516038--41516354	99	3.2	98	83	3	368	36	21	24	17	1.94
41516038--41516354	49	6.4	49	68	12	166	36	21	24	17	1.94
41516348--41516392	20	2.2	20	100	0	90	26	28	26	17	1.98
41516956--41517010	14	4.0	14	73	4	58	21	30	21	25	1.98
41517587--41517625	3	13.0	3	100	0	78	66	0	0	33	0.92
41518692--41518864	30	5.8	30	83	4	197	38	24	1	35	1.66
41518913--41519049	59	2.3	58	82	4	159	32	27	5	34	1.81
41525003--41525102	50	2.0	50	96	0	182	18	27	24	31	1.97
41525601--41525666	23	2.8	25	84	11	77	48	1	1	48	1.20
41531054--41531096	16	2.8	15	82	13	52	62	2	0	34	1.08
41532819--41532887	34	2.0	34	100	0	138	50	2	17	28	1.60
41541555--41541613	29	2.0	29	93	0	100	15	23	27	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41545947--41546020	27	2.7	27	74	17	80	45	31	0	22	1.53
41546053--41546187	56	2.4	57	92	3	227	42	31	2	22	1.69
41546153--41546204	21	2.5	21	87	3	79	44	30	0	25	1.54
41546444--41546476	17	1.9	17	93	0	57	51	0	0	48	1.00
41546588--41546673	42	2.0	42	100	0	172	32	6	6	53	1.55
41549692--41549728	17	2.2	17	86	13	51	13	0	13	72	1.11
41557938--41558052	55	2.1	56	93	1	196	29	16	7	46	1.75
41560366--41560403	18	2.1	18	90	5	58	60	0	0	39	0.97
41560365--41560406	9	4.7	9	77	11	50	57	0	0	42	0.99
41561063--41561092	15	2.0	15	93	0	51	70	0	0	30	0.88
41562970--41563033	13	4.6	13	76	18	58	70	0	1	28	0.97
41562993--41563062	22	3.3	20	79	13	77	72	0	1	25	0.92
41562970--41563059	13	6.9	13	72	25	57	71	0	2	26	0.98
41563440--41563473	11	2.8	13	82	17	54	41	5	0	52	1.25
41563440--41563487	24	2.0	24	88	8	71	33	8	0	58	1.28
41565703--41565763	30	2.0	30	87	0	86	32	19	19	27	1.96
41565725--41565881	39	4.0	39	80	1	163	37	19	16	26	1.93
41565641--41565841	108	1.9	108	84	0	276	34	18	17	29	1.94
41565725--41565881	78	2.0	78	81	7	185	37	19	16	26	1.93
41567675--41567715	21	2.0	21	90	0	64	14	7	39	39	1.74
41571340--41571367	14	2.0	14	100	0	56	21	0	0	78	0.75
41571336--41571370	18	2.0	17	94	5	61	22	0	0	77	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41579059--41579090	16	2.0	16	93	0	55	53	0	21	25	1.46
41579565--41580012	195	2.3	195	82	6	541	27	20	27	24	1.99
41582800--41582833	17	2.1	17	88	5	52	41	0	0	58	0.98
41583843--41583886	22	2.0	22	100	0	88	50	9	18	22	1.75
41587384--41587561	24	7.4	24	83	0	194	21	26	16	35	1.94
41594074--41594306	24	9.7	24	81	0	268	20	27	17	35	1.94
41594074--41594306	72	3.2	72	85	0	295	20	27	17	35	1.94
41596329--41596390	9	6.7	9	77	14	63	54	16	1	27	1.51
41596321--41596419	25	4.1	25	71	19	77	53	16	2	28	1.54
41598984--41599041	24	2.4	25	82	8	75	22	18	17	41	1.90
41599132--41599195	24	2.7	23	75	2	65	31	12	14	42	1.82
41599178--41599213	12	3.2	12	84	15	58	27	16	22	33	1.95
41600836--41600863	10	2.8	10	100	0	56	25	32	10	32	1.90
41621323--41621479	37	4.2	37	88	3	226	15	22	30	31	1.95
41622159--41622202	20	2.2	20	95	0	79	40	11	15	31	1.83
41622901--41622927	14	1.9	14	100	0	54	48	7	7	37	1.59
41623203--41623228	12	2.2	12	100	0	52	15	7	0	76	0.99
41623206--41623240	17	2.1	16	89	5	52	14	5	2	77	1.07
41628568--41628622	18	3.1	18	76	7	58	47	1	1	49	1.23
41628631--41628661	16	1.9	16	93	0	53	61	0	0	38	0.96
41631338--41631887	183	3.0	183	94	0	922	24	19	25	30	1.98
41632734--41632804	9	7.4	9	75	10	52	67	7	2	22	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41632752--41632795	21	2.1	21	83	8	54	72	6	4	15	1.22
41632748--41632817	19	3.6	19	75	11	63	65	7	2	24	1.31
41633026--41633063	19	2.0	19	85	10	51	57	0	0	42	0.98
41633401--41633457	27	2.1	28	86	3	80	66	7	3	22	1.31
41633591--41633649	26	2.2	26	82	14	68	61	3	3	32	1.29
41633622--41633672	18	2.8	18	74	14	52	64	5	3	25	1.33
41633693--41633731	19	2.1	19	85	0	51	79	17	2	0	0.84
41633755--41633792	20	1.9	20	89	10	60	52	31	0	15	1.43
41648125--41648183	5	12.2	5	80	7	59	35	0	5	59	1.20
41651496--41651534	18	2.2	17	90	4	60	64	5	2	28	1.28
41651500--41651539	18	2.4	17	84	15	57	62	7	2	27	1.35
41656290--41656345	12	4.5	13	78	8	55	32	1	0	66	1.03
41656290--41656355	12	5.5	12	75	7	53	28	1	1	68	1.08
41657563--41657597	18	1.9	18	100	0	70	20	28	28	22	1.98
41666347--41666427	2	40.5	2	100	0	162	49	0	50	0	1.00
41669369--41669408	18	2.1	19	86	9	55	45	0	0	55	0.99
41669420--41669453	18	1.9	17	88	5	50	47	0	2	50	1.16
41669958--41669993	16	2.2	16	90	0	54	44	0	19	36	1.51
41670177--41670305	61	2.1	62	89	1	197	51	2	1	44	1.23
41670874--41670922	22	2.2	22	85	0	62	46	14	8	30	1.73
41672344--41672444	21	4.9	21	68	18	68	45	0	0	52	1.14
41672302--41672434	61	2.2	59	89	5	196	44	0	1	53	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41672638--41672668	16	1.9	16	93	0	53	32	22	0	45	1.53
41697240--41697318	29	2.7	30	78	7	90	45	1	8	44	1.43
41697240--41697333	30	3.2	29	73	10	93	45	1	9	43	1.43
41697240--41697415	59	2.9	59	77	14	166	42	2	13	42	1.56
41702534--41702569	17	2.1	18	89	5	56	44	11	11	33	1.75
41713881--41713941	18	3.3	18	73	11	52	73	4	0	21	1.01
41713890--41713941	19	2.9	17	78	13	59	71	5	0	23	1.07
41717808--41718222	29	14.2	29	74	13	273	31	5	27	35	1.80
41717915--41718222	88	3.5	85	74	17	252	33	4	26	36	1.76
41717979--41718261	30	9.6	29	71	14	98	33	3	25	37	1.74
41717887--41718264	29	12.9	28	74	12	215	33	3	26	36	1.74
41717881--41718261	59	6.5	58	72	14	196	33	3	26	35	1.75
41725427--41725618	96	2.0	96	80	4	217	35	12	19	31	1.89
41725846--41725919	29	2.5	30	74	25	70	44	2	14	37	1.60
41725905--41726064	29	5.5	29	67	23	95	35	3	28	33	1.73
41725847--41726072	59	3.9	59	82	6	264	38	2	25	33	1.70
41725906--41726064	28	5.4	30	70	23	108	35	3	28	33	1.73
41726050--41726123	30	2.5	29	80	6	78	37	2	21	37	1.68
41728158--41728207	17	3.0	16	78	16	57	54	4	2	40	1.31
41728157--41728206	23	2.2	23	89	7	75	54	2	2	42	1.23
41728157--41728206	6	8.7	6	79	16	61	54	2	2	42	1.23
41728175--41728219	23	2.0	23	82	8	56	55	2	2	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41729804--41729889	17	5.1	17	78	2	84	51	3	3	41	1.36
41732252--41732287	17	2.1	18	89	5	56	52	0	2	44	1.15
41735525--41735750	37	6.1	37	87	1	292	12	19	33	34	1.89
41736454--41736494	21	2.0	21	90	0	64	39	12	17	31	1.86
41738944--41738976	11	3.1	11	91	4	50	24	0	3	72	0.98
41739113--41739151	20	2.0	20	90	10	62	35	0	10	53	1.35
41755972--41755997	8	3.2	8	100	0	52	46	11	11	30	1.76
41759671--41759747	18	4.2	19	86	5	113	24	24	20	29	1.99
41759671--41759747	37	2.1	37	97	0	145	24	24	20	29	1.99
41761604--41761798	103	1.9	103	84	2	266	38	17	12	31	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182