genome.fa.s9.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  133  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41766151--41766193	21	2.0	21	100	0	86	44	9	4	41	1.57
41768919--41769041	49	2.5	49	87	6	162	54	10	5	29	1.57
41775079--41775115	13	2.7	14	95	4	67	72	2	0	24	0.97
41776815--41776874	24	2.5	24	83	8	68	35	1	6	56	1.35
41779053--41779092	21	2.0	20	85	5	53	37	2	2	57	1.26
41779695--41779738	22	2.0	21	82	4	52	47	2	6	43	1.42
41780958--41781005	25	1.9	25	83	8	62	41	0	6	52	1.27
41788808--41788845	17	2.2	17	90	0	58	18	10	5	65	1.41
41791429--41791454	7	3.7	7	100	0	52	42	15	15	26	1.87
41791867--41791956	24	3.7	23	85	11	126	22	18	18	40	1.92
41791961--41792014	24	2.2	24	83	0	72	20	24	18	37	1.94
41793914--41793993	36	2.2	37	82	8	101	40	3	1	55	1.26
41795984--41796038	25	2.2	25	100	0	110	36	7	21	34	1.81
41796334--41796904	283	2.0	283	100	0	1142	38	19	14	27	1.91
41816378--41816434	30	1.9	30	86	13	82	40	5	35	19	1.74
41823899--41823940	22	2.0	21	85	4	57	42	11	7	38	1.69
41836762--41837057	148	2.0	148	87	1	423	29	14	22	33	1.93
41839201--41839226	13	2.0	13	100	0	52	38	7	23	30	1.83
41843312--41843403	19	4.6	19	73	9	67	66	3	0	30	1.08
41843374--41843411	10	3.7	10	89	6	58	76	2	0	21	0.91
41843374--41843428	21	2.6	20	80	13	58	74	1	1	21	1.01
41846205--41846231	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41853703--41853744	12	3.5	12	78	12	50	45	11	9	33	1.73
41853698--41853756	24	2.5	24	88	0	91	40	16	10	32	1.82
41853715--41853791	36	2.1	36	92	0	127	41	16	11	29	1.84
41863288--41863313	3	8.7	3	100	0	52	69	0	0	30	0.89
41866275--41866314	5	8.0	5	97	0	62	0	0	65	35	0.93
41871347--41871698	23	15.3	23	83	1	447	46	13	5	33	1.66
41871964--41872225	129	2.0	129	98	0	506	44	16	8	31	1.76
41873518--41873883	80	4.6	80	86	0	480	35	25	16	21	1.95
41875174--41875198	2	12.5	2	100	0	50	48	0	0	52	1.00
41878550--41878577	5	5.6	5	100	0	56	0	17	0	82	0.68
41884095--41884121	2	13.5	2	100	0	54	0	51	0	48	1.00
41889049--41889104	29	2.0	27	83	10	69	21	17	7	53	1.67
41889289--41889351	28	2.3	27	88	5	90	60	4	6	28	1.42
41892992--41893183	81	2.3	80	86	5	260	30	21	9	38	1.85
41892992--41893183	40	4.7	41	87	3	253	30	21	9	38	1.85
41894469--41894514	23	2.0	23	100	0	92	39	8	13	39	1.75
41896504--41896577	21	3.5	21	81	7	80	29	12	25	32	1.92
41898970--41899031	24	2.4	26	78	10	65	24	6	1	67	1.23
41901819--41902130	29	10.9	28	73	11	149	34	25	2	37	1.70
41901831--41902053	56	3.8	58	77	12	181	34	26	2	37	1.69
41901818--41902034	30	7.5	31	75	12	167	33	28	2	35	1.70
41901849--41902046	28	6.9	29	74	14	142	33	26	2	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41902417--41902609	97	2.0	96	89	3	298	27	18	17	36	1.94
41904312--41904357	17	2.6	18	76	13	51	60	2	0	36	1.09
41904752--41904800	24	2.1	23	88	11	73	44	22	8	24	1.79
41906162--41906520	58	6.2	58	82	7	329	35	27	2	33	1.71
41906154--41906428	29	9.4	27	65	19	108	37	28	1	33	1.66
41906290--41906431	29	4.8	29	72	19	123	38	27	0	34	1.57
41906297--41906448	29	5.2	29	72	19	109	38	28	0	32	1.62
41918680--41919730	201	5.2	201	91	1	1612	37	20	22	19	1.95
41920464--41920512	24	2.1	23	85	11	64	46	22	6	24	1.74
41921925--41922027	29	3.5	29	71	17	95	33	26	1	37	1.68
41921952--41922122	29	5.8	29	68	16	111	32	28	4	33	1.78
41921868--41922118	118	2.1	116	88	1	367	34	27	3	33	1.74
41921984--41922149	29	5.7	29	71	21	109	34	27	4	33	1.76
41921868--41922123	59	4.4	58	82	6	284	34	27	3	33	1.75
41930281--41930341	31	2.0	31	96	0	113	34	11	24	29	1.91
41932773--41933502	78	9.3	78	83	1	798	25	28	19	27	1.98
41932771--41933463	39	17.7	39	70	10	349	24	28	19	27	1.98
41933921--41933967	7	6.6	7	81	13	51	46	2	0	51	1.13
41935949--41936215	30	9.0	30	78	9	244	33	25	3	38	1.72
41935936--41936249	59	5.4	59	81	7	347	33	25	3	37	1.74
41935941--41936323	59	6.6	57	78	10	321	35	24	3	37	1.71
41935956--41936304	30	11.9	30	74	9	220	34	24	3	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41936588--41936781	97	2.0	97	90	2	309	29	19	14	36	1.92
41940809--41941131	112	2.9	110	83	7	372	29	19	11	39	1.86
41941686--41941869	50	3.7	50	74	10	171	37	14	29	17	1.90
41942204--41942710	78	6.5	78	90	1	746	30	25	19	25	1.98
41944763--41944973	104	2.0	104	83	4	264	32	12	15	39	1.84
41947785--41947822	16	2.4	16	90	0	58	42	5	23	28	1.76
41947972--41948023	26	2.0	26	85	10	72	51	0	0	48	1.00
41947981--41948150	58	2.9	57	80	8	193	54	2	1	41	1.20
41953347--41953627	140	2.0	140	95	0	499	40	18	11	28	1.86
41954683--41954815	67	2.0	67	95	0	239	37	23	18	21	1.94
41957547--41957575	14	2.0	15	93	6	51	68	0	3	27	1.05
41957692--41957742	19	2.7	19	84	6	68	23	9	1	64	1.34
41957664--41957749	11	7.8	11	73	8	68	23	6	2	67	1.27
41963530--41963568	14	2.6	14	84	8	51	69	2	0	28	1.02
41964852--41964910	17	3.5	17	72	25	61	38	1	40	18	1.61
41964853--41964917	34	1.9	34	93	0	112	40	3	38	18	1.66
41965058--41965095	15	2.5	15	100	0	76	36	18	5	39	1.73
41969730--41969794	34	1.9	34	90	0	103	43	3	35	18	1.66
41969729--41969787	17	3.5	17	70	25	52	42	1	37	18	1.61
41971570--41971599	6	5.0	6	100	0	60	16	66	16	0	1.25
41988788--41988954	59	2.9	56	79	9	167	56	5	9	28	1.53
41990294--41990336	15	2.9	15	79	10	52	51	0	2	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41991950--41992315	120	3.1	120	96	1	691	36	12	8	43	1.73
41996355--41996381	14	1.9	14	100	0	54	48	7	0	44	1.31
42001504--42001758	62	4.1	62	93	0	404	31	12	21	34	1.91
42003358--42003387	9	3.3	9	95	0	51	40	23	0	36	1.55
42003961--42004001	17	2.4	17	87	0	64	41	0	2	56	1.13
42006049--42006078	15	2.0	15	93	0	51	20	43	20	16	1.88
42006464--42006540	29	2.7	29	83	0	82	42	18	2	36	1.64
42006579--42006619	20	2.0	20	90	0	64	36	31	2	29	1.71
42006493--42006603	29	3.8	29	79	8	100	43	22	2	31	1.67
42006551--42006648	49	2.0	49	88	4	144	37	25	3	33	1.72
42009939--42010104	45	3.6	47	84	7	214	27	25	10	36	1.89
42010244--42010273	15	2.1	14	93	6	51	16	63	0	20	1.31
42010225--42010288	18	3.7	18	79	12	80	20	57	0	21	1.40
42010327--42010414	30	2.9	30	84	0	104	30	50	1	18	1.54
42015392--42015492	49	2.1	46	85	5	130	33	8	13	43	1.76
42028415--42028488	30	2.4	31	93	2	123	45	1	0	52	1.09
42028449--42028492	23	2.0	23	91	8	74	54	0	0	45	0.99
42028449--42028492	21	2.0	20	87	12	61	54	0	0	45	0.99
42028853--42028885	16	2.1	16	100	0	66	36	18	12	33	1.88
42029011--42029069	23	2.6	23	83	0	73	8	27	22	42	1.82
42029394--42029434	19	2.2	18	86	4	55	7	0	7	85	0.75
42029393--42029434	18	2.3	19	84	15	54	7	0	9	83	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42032439--42032568	30	4.3	30	77	5	111	35	9	19	36	1.84
42032441--42032568	61	2.1	60	82	1	148	35	8	19	36	1.83
42032490--42032599	31	3.6	31	80	8	102	34	5	19	40	1.74
42034270--42034349	39	2.1	39	87	0	115	18	15	31	35	1.92
42034508--42035464	123	7.8	123	84	3	1142	24	20	15	39	1.91
42034508--42035435	245	3.8	246	84	3	1197	24	20	15	40	1.91
42034506--42035456	368	2.6	368	84	2	1230	24	20	15	39	1.91
42035348--42035531	75	2.5	75	86	0	251	22	23	14	39	1.91
42035438--42035632	105	1.9	105	88	0	300	22	22	16	38	1.93
42035543--42036638	123	8.9	122	82	2	1121	22	19	16	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182