genome.fa.s9.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032253.1 Gossypioides kirkii chromosome KI_11
Parameters: 2 7 7 80 10 50 1000
Length:  55708359

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  97  of  182  ( 21729 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31727909--31728076	87	1.9	88	86	1	239	18	14	22	44	1.86
31727890--31728070	29	6.2	28	78	10	123	19	13	22	44	1.85
31727894--31728117	116	1.9	116	87	0	331	20	16	20	42	1.89
31728157--31728199	22	2.0	22	85	0	59	25	18	20	34	1.96
31728243--31728301	26	2.3	26	87	0	82	28	18	20	32	1.96
31740452--31740604	47	3.3	47	73	9	150	32	13	20	33	1.92
31744768--31744962	52	3.8	52	83	1	230	24	16	25	33	1.96
31751931--31752068	51	2.7	51	88	3	197	21	14	26	36	1.92
31765543--31765579	18	2.1	18	100	0	74	27	5	16	51	1.66
31770978--31771056	34	2.4	34	82	6	99	46	6	18	27	1.73
31779102--31779183	14	5.9	14	77	9	71	32	23	21	21	1.98
31779117--31779182	28	2.4	28	84	0	87	31	22	22	22	1.98
31779102--31779183	7	11.9	7	71	2	58	32	23	21	21	1.98
31786222--31786262	13	3.2	13	85	0	64	51	19	12	17	1.76
31786239--31786284	21	2.2	20	92	3	74	45	21	10	21	1.82
31786259--31786298	14	2.9	14	88	7	55	40	25	12	22	1.89
31788429--31788483	27	2.0	27	89	0	83	36	10	23	29	1.89
31788429--31788495	27	2.5	27	82	0	71	35	11	23	28	1.91
31805376--31805525	74	2.0	75	89	1	230	28	17	10	44	1.80
31818671--31818784	57	2.0	57	94	0	201	24	14	25	35	1.93
31831101--31831144	21	2.1	21	83	8	54	61	13	22	2	1.43
31836114--31836161	23	2.2	23	88	7	73	4	14	0	81	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31846789--31846833	18	2.5	17	78	7	54	66	0	33	0	0.92
31849371--31849428	4	15.0	4	78	10	59	72	1	1	24	1.03
31892407--31892432	9	2.9	9	100	0	52	11	11	11	65	1.48
31900614--31900668	20	2.8	20	88	0	83	36	7	12	43	1.71
31903972--31904006	16	2.2	16	100	0	70	25	34	22	17	1.96
31909675--31909720	20	2.3	20	84	0	56	41	6	15	36	1.73
31912122--31912180	20	3.0	20	82	0	64	32	10	13	44	1.77
31912144--31912182	20	2.0	20	94	0	69	35	10	7	46	1.67
31921711--31921869	40	4.0	40	75	7	160	32	23	17	26	1.97
31923812--31923844	15	2.1	16	88	5	50	24	6	0	69	1.10
31923877--31923916	21	2.0	21	85	5	55	22	10	5	62	1.46
31931198--31931235	20	1.9	20	94	0	67	50	28	10	10	1.70
31935567--31935841	71	3.9	71	86	0	381	34	23	18	24	1.96
31944024--31944200	92	1.9	92	84	8	236	40	23	6	29	1.80
31944032--31944239	93	2.3	87	82	10	233	39	22	8	29	1.83
31944605--31944667	10	6.6	10	74	15	53	26	6	1	65	1.26
31944603--31944656	9	5.9	9	78	10	56	27	7	1	62	1.32
31944596--31944667	18	3.8	18	77	15	67	29	5	1	63	1.25
31944745--31944917	89	2.0	88	82	1	211	35	7	19	36	1.80
31944779--31944948	89	1.9	86	83	5	216	35	8	21	34	1.85
31958798--31958837	6	6.7	6	100	0	80	0	0	30	70	0.88
31960674--31960715	21	2.0	21	85	0	57	33	2	16	47	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31961481--31961516	18	2.0	18	100	0	72	33	16	33	16	1.92
31961499--31961574	27	2.8	27	88	4	100	25	22	21	31	1.98
31961553--31961618	27	2.4	27	75	9	64	27	24	21	27	1.99
31965101--31965181	32	2.8	28	77	14	90	38	35	8	17	1.80
31965125--31965299	32	5.6	30	82	6	181	40	33	8	18	1.80
31965125--31965298	64	2.8	64	82	3	219	40	33	7	18	1.79
31965121--31965300	96	1.9	94	89	4	281	40	32	8	18	1.81
31966245--31966286	18	2.3	18	88	8	59	0	9	21	69	1.17
31985682--31985763	15	5.5	15	91	0	101	41	23	8	26	1.83
31985683--31985763	30	2.7	30	90	0	117	40	23	8	27	1.83
31989516--31989648	51	2.6	51	85	0	167	36	24	10	29	1.89
31989680--31989837	33	4.8	33	72	9	126	21	48	3	27	1.65
31989812--31989843	13	2.5	13	100	0	64	18	59	0	21	1.38
31989833--31989913	33	2.3	35	87	6	121	20	50	0	28	1.49
31989755--31989912	79	2.0	79	83	6	201	20	50	1	27	1.57
31990793--31990852	16	3.6	16	82	10	68	26	0	21	51	1.48
31990794--31990852	17	3.6	16	84	8	75	27	0	22	50	1.49
31995630--31995731	46	2.2	46	87	0	141	41	20	9	28	1.84
32004168--32004195	2	14.0	2	100	0	56	50	0	0	50	1.00
32005262--32005327	25	2.6	25	80	4	80	24	24	22	28	1.99
32012747--32012791	18	2.5	18	88	0	63	37	24	20	17	1.93
32025624--32025669	15	2.8	17	75	18	53	2	17	0	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32026265--32026303	18	2.2	17	90	4	60	53	12	17	15	1.72
32027330--32027367	18	2.1	19	85	9	53	0	34	0	65	0.93
32027419--32027638	115	1.9	115	97	0	413	34	21	15	28	1.94
32040545--32041260	358	2.0	358	96	0	1306	29	18	19	32	1.96
32045981--32046022	18	2.5	17	81	14	52	78	0	21	0	0.75
32055241--32055278	18	2.2	18	90	4	60	50	0	0	50	1.00
32055343--32055380	14	2.7	14	95	0	67	5	31	2	60	1.33
32056140--32056165	11	2.4	11	100	0	52	53	0	0	46	1.00
32056154--32056195	17	2.4	18	84	7	61	50	0	0	50	1.00
32056138--32056190	27	2.0	25	82	7	61	58	0	0	41	0.98
32056151--32056183	16	2.2	15	89	10	50	60	0	0	39	0.97
32059682--32059732	25	2.0	26	84	7	68	45	1	1	50	1.24
32061155--32061197	17	2.4	18	85	14	54	74	4	2	18	1.10
32061184--32061257	31	2.5	30	82	6	96	62	1	5	31	1.26
32061184--32061267	30	2.8	29	79	12	89	63	1	5	29	1.26
32061283--32061323	18	2.4	17	91	4	64	41	0	0	58	0.98
32071853--32072462	303	2.0	303	96	0	1121	35	16	14	33	1.89
32078179--32078241	21	3.0	21	83	6	74	50	9	7	31	1.64
32082026--32082063	16	2.4	16	86	0	58	28	0	23	47	1.52
32091909--32091951	16	2.6	16	85	7	50	6	20	0	72	1.08
32093388--32093425	20	1.9	19	89	5	58	68	0	10	21	1.19
32105304--32105353	26	1.9	26	87	0	73	22	18	26	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32105314--32105534	26	8.6	26	80	3	223	25	19	24	30	1.98
32108410--32108468	27	2.2	27	84	6	75	13	15	37	33	1.86
32113014--32113400	192	2.0	192	98	0	747	24	21	19	34	1.96
32123712--32123763	19	2.7	19	90	0	68	44	26	3	25	1.71
32124840--32124873	16	2.1	16	88	0	50	44	5	5	44	1.52
32127043--32127092	9	5.1	9	77	17	55	4	14	0	82	0.82
32132946--32133019	3	24.7	3	85	0	103	28	36	0	35	1.58
32137649--32137809	84	1.9	84	85	2	225	42	13	24	19	1.87
32143071--32143195	28	4.5	28	75	4	117	28	11	22	38	1.88
32151898--32151927	14	2.1	14	100	0	60	40	6	6	46	1.56
32154237--32154296	24	2.5	24	86	2	86	23	15	13	48	1.79
32154392--32154437	23	2.0	23	87	8	67	41	10	15	32	1.82
32158240--32158335	49	1.9	50	91	2	158	43	15	5	35	1.69
32160171--32160230	23	2.5	23	80	17	61	45	8	1	45	1.43
32169133--32169164	13	2.5	13	100	0	64	78	0	21	0	0.76
32169133--32169178	17	2.6	17	86	6	56	71	0	28	0	0.86
32169358--32169401	4	10.5	4	85	9	61	77	2	20	0	0.88
32169358--32169415	17	3.4	17	90	2	80	72	1	25	0	0.94
32169358--32169398	13	3.2	13	86	10	57	78	2	19	0	0.87
32169133--32169595	237	1.9	238	98	0	892	46	0	17	34	1.51
32170149--32170198	16	3.2	16	71	21	52	60	6	0	34	1.21
32170231--32170325	30	3.2	30	70	14	97	36	5	11	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32171499--32171591	43	2.2	42	82	5	107	33	8	8	49	1.64
32172465--32172535	29	2.5	29	81	6	83	40	28	1	29	1.65
32172518--32172574	28	2.0	29	89	3	89	50	17	0	31	1.46
32174699--32174723	12	2.1	12	100	0	50	28	8	16	48	1.74
32174934--32174980	24	2.0	24	100	0	94	17	17	21	44	1.86
32175441--32175474	4	8.2	4	93	6	59	0	23	0	76	0.79
32175434--32175477	17	2.8	15	80	10	52	0	27	0	72	0.85
32176768--32176898	28	4.7	27	71	18	88	29	5	6	58	1.44
32176768--32176898	29	4.6	26	71	17	75	29	5	6	58	1.44
32176768--32176888	58	2.1	58	82	8	142	28	4	6	60	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182